Transcript Overview
| Name | Psat4g004880.1 |
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| Unique Name | Psat4g004880.1_Ps_Cameor_v1a |
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| Type | mRNA |
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| Organism | Pisum sativum (pea) |
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| Sequence length | 1004 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g004880.1 | Psat4g004880.1_Ps_Cameor_v1a-protein | Pisum sativum | polypeptide |
| Psat4g004880.1_Ps_Cameor_v1a | Psat4g004880.1_Ps_Cameor_v1a | Pisum sativum | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g004880.1.five_prime_utr1 | Psat4g004880.1.five_prime_utr1_Ps_Cameor_v1a | Pisum sativum | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g004880.1.exon1 | Psat4g004880.1.exon1_Ps_Cameor_v1a | Pisum sativum | exon |
| Psat4g004880.1.exon2 | Psat4g004880.1.exon2_Ps_Cameor_v1a | Pisum sativum | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g004880.1.cds1 | Psat4g004880.1.cds1_Ps_Cameor_v1a | Pisum sativum | CDS |
| Psat4g004880.1.cds2 | Psat4g004880.1.cds2_Ps_Cameor_v1a | Pisum sativum | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g004880.1.three_prime_utr1 | Psat4g004880.1.three_prime_utr1_Ps_Cameor_v1a | Pisum sativum | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 56..107 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 15..43 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 56..134 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat4g004880.1_Ps_Cameor_v1a ID=Psat4g004880.1_Ps_Cameor_v1a; Name=Psat4g004880.1; organism=Pisum sativum; type=mRNA; length=1004bp
TCTGCACCAGCTACTTCATACTTCTTTTTTCATTCCTCTTTCCATTCCAA
AATGGCCACTGTTGAGGTAATAATTCAAATATATATACTCTTTTCTACCT
TGAGTTGTTATTCTAACTCTACATAGCTATAGTTATATGCATTGCATTAA
GTGTCATACAGATACAATTATATGATAAGTTATAACAGTAGTGTTTCATA
GTGATATTGATCTTGCAAATGCACTAAACATTTTCCGTTGGATCAATCAA
AAGTATCGATCCAATGGAATGTAAACAACAAGTTAATGTAGATCTCTCTG
TTTAATTTTCATGATCCAAAGTAACATAAACGTAACACTTGTTGAACATT
GCTGGCTAATGAAAATGGATCTTTCAGGTTGAAACACAGCAAGTAGTACC
AAATGAAACAGTTGAGGTAACCAAGGTGGATGAAACAACACCCGCCTCCG
AGGTTCTTGTCTCAGAACCGGTGACCACGGAACAACCAAAAGAAGAGGCT
GTTGCAGAAGAAGCTGTCGCAGAAGCAGCAGTAGAGAAAGAAGCAGAAAC
TGAAGTACCAGTTGAAGCTGAGACTACAGAAGTAGCAGAAGAAGCCAAGC
CAGAGGTAGAAAACCCGGCAACCGAGAAAGTTGAAGAAGTGAAAGAGGAA
GCAACAACTGAGGAGGCTAAAGAAACTACTGAAACAGAATCAGCAGTAGC
ATCAGCAGTAGTTGAAGAGAACAAAGCAGCTGAAACTGCAGTGGAAGATG
TCACCACAGAAGCATAGACAATTGTTGTCGACATTGATGAGAACTTTTCT
ATTTTATTGTTTGGTTTCTTTTTCCTTTTTTTCATTGATCTTGTTGTGAA
GGTAAGTCTTTGGATATGGCTTTAAGGTTTATTATATTATATAAAGAGTC
ATGGCCATTGAAGTTTGGGGATGATGATAGTTCCAACAAGGTTCAACTAG
CTTGATTATCATATGTATTTCTCCTGGTTTGAATAAATTATATTTACTTT
TTTT back to topprotein sequence of Psat4g004880.1_Ps_Cameor_v1a >Psat4g004880.1_Ps_Cameor_v1a ID=Psat4g004880.1_Ps_Cameor_v1a; Name=Psat4g004880.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=135bp
MATVEVETQQVVPNETVEVTKVDETTPASEVLVSEPVTTEQPKEEAVAEE
AVAEAAVEKEAETEVPVEAETTEVAEEAKPEVENPATEKVEEVKEEATTE
EAKETTETESAVASAVVEENKAAETAVEDVTTEA* back to topmRNA from alignment at chr4LG4:5211106..5212109- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Psat4g004880.1_Ps_Cameor_v1a ID=Psat4g004880.1_Ps_Cameor_v1a; Name=Psat4g004880.1; organism=Pisum sativum; type=mRNA; length=1004bp; location=Sequence derived from: chr4LG4:5211106..5212109- (Pisum sativum
TCTGCACCAGCTACTTCATACTTCTTTTTTCATTCCTCTTTCCATTCCAA
AATGGCCACTGTTGAGGTAATAATTCAAATATATATACTCTTTTCTACCT
TGAGTTGTTATTCTAACTCTACATAGCTATAGTTATATGCATTGCATTAA
GTGTCATACAGATACAATTATATGATAAGTTATAACAGTAGTGTTTCATA
GTGATATTGATCTTGCAAATGCACTAAACATTTTCCGTTGGATCAATCAA
AAGTATCGATCCAATGGAATGTAAACAACAAGTTAATGTAGATCTCTCTG
TTTAATTTTCATGATCCAAAGTAACATAAACGTAACACTTGTTGAACATT
GCTGGCTAATGAAAATGGATCTTTCAGGTTGAAACACAGCAAGTAGTACC
AAATGAAACAGTTGAGGTAACCAAGGTGGATGAAACAACACCCGCCTCCG
AGGTTCTTGTCTCAGAACCGGTGACCACGGAACAACCAAAAGAAGAGGCT
GTTGCAGAAGAAGCTGTCGCAGAAGCAGCAGTAGAGAAAGAAGCAGAAAC
TGAAGTACCAGTTGAAGCTGAGACTACAGAAGTAGCAGAAGAAGCCAAGC
CAGAGGTAGAAAACCCGGCAACCGAGAAAGTTGAAGAAGTGAAAGAGGAA
GCAACAACTGAGGAGGCTAAAGAAACTACTGAAACAGAATCAGCAGTAGC
ATCAGCAGTAGTTGAAGAGAACAAAGCAGCTGAAACTGCAGTGGAAGATG
TCACCACAGAAGCATAGACAATTGTTGTCGACATTGATGAGAACTTTTCT
ATTTTATTGTTTGGTTTCTTTTTCCTTTTTTTCATTGATCTTGTTGTGAA
GGTAAGTCTTTGGATATGGCTTTAAGGTTTATTATATTATATAAAGAGTC
ATGGCCATTGAAGTTTGGGGATGATGATAGTTCCAACAAGGTTCAACTAG
CTTGATTATCATATGTATTTCTCCTGGTTTGAATAAATTATATTTACTTT
TTTT back to topCoding sequence (CDS) from alignment at chr4LG4:5211106..5212109- >Psat4g004880.1_Ps_Cameor_v1a ID=Psat4g004880.1_Ps_Cameor_v1a; Name=Psat4g004880.1; organism=Pisum sativum; type=CDS; length=810bp; location=Sequence derived from: chr4LG4:5211106..5212109- (Pisum sativum
ATGGCCACTGTTGAGATGGCCACTGTTGAGGTTGAAACACAGCAAGTAGT
ACCAAATGAAACAGTTGAGGTAACCAAGGTGGATGAAACAACACCCGCCT
CCGAGGTTCTTGTCTCAGAACCGGTGACCACGGAACAACCAAAAGAAGAG
GCTGTTGCAGAAGAAGCTGTCGCAGAAGCAGCAGTAGAGAAAGAAGCAGA
AACTGAAGTACCAGTTGAAGCTGAGACTACAGAAGTAGCAGAAGAAGCCA
AGCCAGAGGTAGAAAACCCGGCAACCGAGAAAGTTGAAGAAGTGAAAGAG
GAAGCAACAACTGAGGAGGCTAAAGAAACTACTGAAACAGAATCAGCAGT
AGCATCAGCAGTAGTTGAAGAGAACAAAGCAGCTGAAACTGCAGTGGAAG
ATGTCACCACAGAAGCATAGGTTGAAACACAGCAAGTAGTACCAAATGAA
ACAGTTGAGGTAACCAAGGTGGATGAAACAACACCCGCCTCCGAGGTTCT
TGTCTCAGAACCGGTGACCACGGAACAACCAAAAGAAGAGGCTGTTGCAG
AAGAAGCTGTCGCAGAAGCAGCAGTAGAGAAAGAAGCAGAAACTGAAGTA
CCAGTTGAAGCTGAGACTACAGAAGTAGCAGAAGAAGCCAAGCCAGAGGT
AGAAAACCCGGCAACCGAGAAAGTTGAAGAAGTGAAAGAGGAAGCAACAA
CTGAGGAGGCTAAAGAAACTACTGAAACAGAATCAGCAGTAGCATCAGCA
GTAGTTGAAGAGAACAAAGCAGCTGAAACTGCAGTGGAAGATGTCACCAC
AGAAGCATAG back to top
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