Psat4g004960.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Psat4g004960.1 vs. DB:Swiss
Match: RRP1B_MOUSE (Ribosomal RNA processing protein 1 homolog B OS=Mus musculus OX=10090 GN=Rrp1b PE=1 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 2.758e-25 Identity = 71/212 (33.49%), Postives = 122/212 (57.55%), Query Frame = 1
Query: 43 KQLAISQKSSREKALRLLLKSWLPSQSQP----LPDEDAKKLWKGLFYCVWHSDKPLVQAEXXXXXXXXXXXXHPSFSVQYF--STFFITMRREWSGIDALRLDKFYLLIRRFVSKTFSLINMNSWDLEFVKVIMNCLDDATFGSKDKLLQGNGVNYHVASIFLDELTPFLPVK--EDVLEVLFKPFFAVMGKLPDKVLLGKIKSGLFDVLL 654
++LA S+K R++A+R L + +L +++Q E+ K+WKGLFYC+W D+PL+Q EL + +S L+ +++ S QY TF+ TM REW GID L+LDK+Y+LIR + ++F ++ N+W+ + + ++ L + + NGV H+ ++L+ELT + D L PF + K D L+ + G+F+V++
Sbjct: 14 QRLASSEKGVRDRAVRKL-RQYLSARTQSDTGSFSQEELLKIWKGLFYCMWVQDEPLLQEELANIISQLIHVVN-SLEAQYLFIQTFWQTMNREWQGIDKLQLDKYYMLIRLVLRQSFEVLKRNAWEESQITLFLDILMKEILSPESQ--SPNGVRTHLIDVYLEELTTVGGAELLADQNLKLIDPFCRIAAKTKDHTLVQTVARGVFEVIV 221
BLAST of Psat4g004960.1 vs. DB:Swiss
Match: RRP1B_HUMAN (Ribosomal RNA processing protein 1 homolog B OS=Homo sapiens OX=9606 GN=RRP1B PE=1 SV=3) HSP 1 Score: 113.62 bits (283), Expect = 4.525e-25 Identity = 72/212 (33.96%), Postives = 122/212 (57.55%), Query Frame = 1
Query: 43 KQLAISQKSSREKALRLLLKSWLPSQSQ----PLPDEDAKKLWKGLFYCVWHSDKPLVQAEXXXXXXXXXXXXHPSFSVQYF-STFFITMRREWSGIDALRLDKFYLLIRRFVSKTFSLINMNSWDLEFVKVIMNCLDDATFGSKDKLLQGNGVNYHVASIFLDELTPFLPVKEDVLEVLFK---PFFAVMGKLPDKVLLGKIKSGLFDVLL 654
++LA S+K R++A++ L + ++ ++Q E+ K+WKGLFYC+W D+PL+Q EL + ++ L+ ++ S + F TF+ TM REW GID LRLDK+Y+LIR + ++F ++ N W+ +KV ++ L + + NGV +H I+LDEL+ + KE + + K PF + K D L+ I G+F+ ++
Sbjct: 14 QRLASSEKGIRDRAVKKL-RQYISVKTQRETGGFSQEELLKIWKGLFYCMWVQDEPLLQEELANTIAQLVHAVNNSAAQHLFIQTFWQTMNREWKGIDRLRLDKYYMLIRLVLRQSFEVLKRNGWEESRIKVFLDVLMKEVLCPESQ--SPNGVRFHFIDIYLDELS-KVGGKELLADQNLKFIDPFCKIAAKTKDHTLVQTIARGVFEAIV 221
BLAST of Psat4g004960.1 vs. DB:Swiss
Match: RRP1_SCHPO (Ribosomal RNA-processing protein 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC9B6.07 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.108e-23 Identity = 73/175 (41.71%), Postives = 102/175 (58.29%), Query Frame = 1
Query: 40 IKQLAISQKSSREKALRLLLKSWLPSQSQPLPDEDAKKLWKGLFYCVWHSDKPLVQAEXXXXXXXXXXXXHPSFSVQYFSTFFITMRREWSGIDALRLDKFYLLIRRFVSKTFSLINMNSWDLEFVKVIM---NCLDDATFGSKDKLLQGNGVNYHVASIFLDELTPFLPVKEDV 555
IK+LA + + +R+KAL L + SQ + D KLWKGLFYC+W +DKPL Q +L D L++L+ I+ + + STF+ TM REW+GID LR DKFYLL+RRF + F I S KV+ D F +++ L NG+ +H+A I+ +EL P EDV
Sbjct: 8 IKKLAANDRKTRDKALESLQR--FLSQKKKFERLDFLKLWKGLFYCMWMADKPLYQQKLSDNLAALVPIVWIDNRILFQSTFWETMGREWTGIDILRTDKFYLLMRRFCAAAFRDIQTRSKTALLDKVVAEYNQMWMDGPFNTEN-LAFPNGILFHLADIWTEELRKVYP--EDV 177
BLAST of Psat4g004960.1 vs. DB:Swiss
Match: RRP1_HUMAN (Ribosomal RNA processing protein 1 homolog A OS=Homo sapiens OX=9606 GN=RRP1 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 2.368e-21 Identity = 66/214 (30.84%), Postives = 116/214 (54.21%), Query Frame = 1
Query: 34 SIIKQLAISQKSSREKALRLLLKSWLPSQSQP----LPDEDAKKLWKGLFYCVWHSDKPLVQAEXXXXXXXXXXXXHPSFSVQYF-STFFITMRREWSGIDALRLDKFYLLIRRFVSKTFSLINMNSWDLEFVKVIMNCLDDATFGSKDKLLQGNGVNYHVASIFLDELTPF--LPVKEDVLEVLFKPFFAVMGKLPDKVLLGKIKSGLFDVLL 654
+ ++LA +++ +R++A+R L K ++ +++Q ++ K+WKGLFYC+W DKPL+Q EL +S L+ + + F F+ TM REW+GID LRLDKFY+L+R ++++ ++ M W+ ++ ++ L + NGV H IFL+ELT + D PF + + D ++L I G+F+ ++
Sbjct: 12 QLAQRLAGNEQVTRDRAVRKLRK-YIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKPLLQEELGRTISQLVHAFQTTEAQHLFLQAFWQTMNREWTGIDRLRLDKFYMLMRMVLNESLKVLKMQGWEERQIEELLELLMTEILHPSSQA--PNGVKSHFIEIFLEELTKVGAEELTADQNLKFIDPFCRIAARTKDSLVLNNITRGIFETIV 222
BLAST of Psat4g004960.1 vs. DB:Swiss
Match: RRP1_MOUSE (Ribosomal RNA processing protein 1 homolog A OS=Mus musculus OX=10090 GN=Rrp1 PE=1 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 3.173e-21 Identity = 71/222 (31.98%), Postives = 115/222 (51.80%), Query Frame = 1
Query: 37 IIKQLAISQKSSREKALRLLLKSWLPSQSQP-----LPDEDAKKLWKGLFYCVWHSDKPLVQAEXXXXXXXXXXXXHPSFSV-QYFSTFFITMRREWSGIDALRLDKFYLLIRRFVSKTFSLINMNSWDLEFVKVIMNCLDDATFGSKDKLLQGNGVNYHVASIFLDELTPFLPVKEDVLEVL--FKPFFAVMGKLPDKVLLGKIKSGLFDVLLRNGKRLLE 678
+ ++LA +++ +R++ALR L K ++ ++SQ PDE K+WKGLFYC+W DKPL Q EL ++ L+ H + + Q+ F+ TM REW GID LRLDKFY+L+R +S++ + WD ++ ++ L + +GV H IFL+EL + + L PF + + D +L KI +F ++ +E
Sbjct: 13 LAQRLAGNEQVTRDRALRKLRK-YIEARSQRATGGFTPDE-LLKVWKGLFYCMWMQDKPLQQEELGRTIAQLVHAFHTTEAQHQFLKAFWQTMIREWVGIDRLRLDKFYMLMRMVLSESLKAVKARGWDERQIEQLLELLTTEILNPDSQAP--SGVKSHFLEIFLEELAKVGAAELTADQNLQFIDPFCQIAARTKDSQVLHKIIQSIFQTIVEQAPLAIE 230
BLAST of Psat4g004960.1 vs. DB:Swiss
Match: RRP1L_DROME (Ribosomal RNA processing protein 1 homolog OS=Drosophila melanogaster OX=7227 GN=Nnp-1 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.524e-18 Identity = 60/213 (28.17%), Postives = 108/213 (50.70%), Query Frame = 1
Query: 37 IIKQLAISQKSSREKALRLLLKSWLPSQ---SQPLPDEDAKKLWKGLFYCVWHSDKPLVQAEXXXXXXXXXXX--XHPSFSVQYFSTFFITMRREWSGIDALRLDKFYLLIRRFVSKTFSLINMNSWDLEFVKVIMNCLDDATFGSKDKLLQGNGVNYHVASIFLDELTPFL--PVKEDVLEVLFKPFFAVMGKLPDKVLLGKIKSGLFDVLL 654
II+ LA + R + +R+L K W ++ S P ++D ++WKGL+Y +W SDKPLVQ EL ++L+ ++ + + S+ YFS F TM +E+ GID R+DKF +L RR V + N+W+ + + + + + + K G+ H +F +EL + + + +PF + D L+ + ++ + L+
Sbjct: 43 IIRALACNDVVERNRQIRILRK-WFKARAGSSFPFNEDDFMRIWKGLYYTMWMSDKPLVQEELAEKLAQMVDSFGGNTACSLAYFSAFMRTMCQEYFGIDQWRMDKFLMLTRRMVRYLLRFLKQNNWNADLIAAFNSSMQLSVMSEQPK---SRGMTMHYLDVFFEELAKAANGEITAAQVNMFLRPFVTYIATQRDAKLVAQCRTRVLYHLM 251
BLAST of Psat4g004960.1 vs. DB:Swiss
Match: RRP1_CAEEL (Ribosomal RNA processing protein 1 homolog OS=Caenorhabditis elegans OX=6239 GN=C47E12.7 PE=3 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 1.770e-15 Identity = 77/289 (26.64%), Postives = 133/289 (46.02%), Query Frame = 1
Query: 43 KQLAISQKSSREKALRLLLKSWLPSQS--QPLPDEDAKKLWKGLFYCVWHSDKPLVQAEXXXXXXXXXXX-XHPSFSVQYFSTFFITMRREWSGIDALRLDKFYLLIRRFVSKTFSLINMNSWDLEFVKVIMNCLDDATFGSKDKLLQGNGVNYHVASIFLDELTPFLPVKEDVLEVLFKPFFAVMG-KLPDKVLLGKIKSGLFDVLLRNGKRLLEVKKSXXXXXXXXXXXXXLGTIALAMG-FGSKLFELASAPDCVQGNRKVLFELHREFLKLEKDAVISGFEFSIP 894
++LA + ++R++ALR+L W+ QS + D D +L KGL Y +W DK ++Q EL DR+ L+ I V++ + F ++ +EW ID R+DKF + +RR V F+ + W + + T S DK + +H ASI LDEL + + + KP+ ++G K + L + +F +L+ +KS + ++ G I + G+ LFE+ RK +++L ++F K + FE +P
Sbjct: 14 QKLACGEPATRQRALRVL-HDWIRDQSAKKHFDDADLMRLCKGLHYVMWMQDKMILQEELADRIGGLINIFTSEEEKVRFVACFLKSLSKEWPHIDRWRMDKFLMEVRRMVRACFTHLAELKWKKDIRDEYWKVFQETTI-STDKSF-NEALKFHFASILLDELDAAGGLTKKQVTACLKPYIELLGNKDISEYLFTSLYEEIFKTILQ--------QKSDLITAVEEGEEMDQGGIEFSYKEIGALLFEVGKQEHLNAKRRKKIYDLVKKFDKSSRGQDPLHFETPVP 291
BLAST of Psat4g004960.1 vs. DB:Swiss
Match: RRP1_DICDI (Ribosomal RNA processing protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=rrp1 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.804e-14 Identity = 68/260 (26.15%), Postives = 110/260 (42.31%), Query Frame = 1
Query: 151 KLWKGLFYCVWHSDKPLVQAEXXXXXXXXXXXXHP-SFSVQYFSTFFITMRREWSGIDALRLDKFYLLIRRFVSKTFSLINMNSWDLE-----------------------FVKVIMNCLDDATFGSKDKLLQGNGVNYHVASIFLDELTPFLPVKEDVLEV-----LFKPFFAVMGKLPDKVLLGKIKSGLFDVLLRNGKRLLEVKKSXXXXXXXXXXXXXLGTIALAMGFGSKLFELASAPDCVQGNRKVLFELHREF 843
K+WKGLF ++++DKP+VQ E +S L S+ + FFI +++ W ID R+DKFY L+R+ ++ +F ++ + E F ++N D+T + NGV H A I+L+EL V + +E + PF + K D V +IK +FD LL + + + M F F+ AS+ D ++ NRK L+ L +F
Sbjct: 62 KIWKGLFLSLYNTDKPIVQEEFSRDISKLTTYFKDYKDSLMFIKCFFIILQKHWDYIDKYRVDKFYSLVRKMLNSSFQILKKRNAQHEEGSEEEEARLALNEQIYSGLVKIFKSTVLNTSSDSTTNT-------NGVLLHFADIYLEEL---FKVTQGHMEPINLTKILLPFVNFLTKSEDDVSCKRIKERVFDRLLTTYSPFDKKDAYYLPKVGVSSSTPEIFPTDYEM-FSKLFFKCASSKDTLEQNRKTLYGLKNQF 310
BLAST of Psat4g004960.1 vs. DB:Swiss
Match: RRP1_YEAST (Ribosomal RNA-processing protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RRP1 PE=1 SV=2) HSP 1 Score: 61.6178 bits (148), Expect = 3.599e-9 Identity = 51/186 (27.42%), Postives = 81/186 (43.55%), Query Frame = 1
Query: 34 SIIKQLAISQKSSREKALRLLLKSWLPSQSQPLPDEDAKKLWKGLFYCVWHSDKPLVQA--------------EXXXXXXXXXXXXHPSFSVQYFSTFFITMRREWSGIDALRLDKFYLLIRRFVSKTFSLINMNSWDL----EFVKVIMNCLDDATFGSKDKLLQGNGVNYHVASIFLDELTPFL 537
+ +KQL+ + + +R AL L K Q + + KLWKGL+Y +W SD+P Q + D ++ L + +++ F+ M EW ID RLDK+ LLIRR + + +WD E++K ++ L K+ G+ H+ I LDE L
Sbjct: 5 NFVKQLSSNNRKTRVNALEALKKYLTAKQFKENKQIEFNKLWKGLYYAMWFSDRPRPQQRLANELGELHGLYFDPKDNSTADELTTNDKAFIKFSRGFWKVMCFEWFNIDRYRLDKYLLLIRRVLFSQLKYLQSRNWDKKLVDEYIKKVLRWL---PLSGSPKVY--TGIPIHIVDILLDEWERLL 185 The following BLAST results are available for this feature:
BLAST of Psat4g004960.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot) Total hits: 9
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat4g004960.1_Ps_Cameor_v1a ID=Psat4g004960.1_Ps_Cameor_v1a; Name=Psat4g004960.1; organism=Pisum sativum; type=mRNA; length=1985bpback to top protein sequence of Psat4g004960.1_Ps_Cameor_v1a >Psat4g004960.1_Ps_Cameor_v1a ID=Psat4g004960.1_Ps_Cameor_v1a; Name=Psat4g004960.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=540bpback to top mRNA from alignment at chr4LG4:5262684..5264668- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Psat4g004960.1_Ps_Cameor_v1a ID=Psat4g004960.1_Ps_Cameor_v1a; Name=Psat4g004960.1; organism=Pisum sativum; type=mRNA; length=1985bp; location=Sequence derived from: chr4LG4:5262684..5264668- (Pisum sativumback to top Coding sequence (CDS) from alignment at chr4LG4:5262684..5264668- >Psat4g004960.1_Ps_Cameor_v1a ID=Psat4g004960.1_Ps_Cameor_v1a; Name=Psat4g004960.1; organism=Pisum sativum; type=CDS; length=3240bp; location=Sequence derived from: chr4LG4:5262684..5264668- (Pisum sativumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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