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Transcript Overview
| Name | Psat4g005840.1 |
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| Unique Name | Psat4g005840.1_Ps_Cameor_v1a |
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| Type | mRNA |
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| Organism | Pisum sativum (pea) |
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| Sequence length | 915 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g005840.1 | Psat4g005840.1_Ps_Cameor_v1a-protein | Pisum sativum | polypeptide |
| Psat4g005840.1_Ps_Cameor_v1a | Psat4g005840.1_Ps_Cameor_v1a | Pisum sativum | polypeptide |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g005840.1.cds1 | Psat4g005840.1.cds1_Ps_Cameor_v1a | Pisum sativum | CDS |
| Psat4g005840.1.cds2 | Psat4g005840.1.cds2_Ps_Cameor_v1a | Pisum sativum | CDS |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g005840.1.exon1 | Psat4g005840.1.exon1_Ps_Cameor_v1a | Pisum sativum | exon |
| Psat4g005840.1.exon2 | Psat4g005840.1.exon2_Ps_Cameor_v1a | Pisum sativum | exon |
Homology
BLAST of Psat4g005840.1 vs. DB:Swiss
Match: FB333_ARATH (Probable F-box protein At4g22030 OS=Arabidopsis thaliana OX=3702 GN=At4g22030 PE=4 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 2.212e-60 Identity = 116/248 (46.77%), Postives = 169/248 (68.15%), Query Frame = 1
Query: 118 EEQRNATRLFKQLWTQIQTKI--SLGNLITEEDVESSMEKVLALDKAYPLPLLGAMLEKFPSKYEPAVWWPQKRREGNAAERKMKRXXXXXXXGWSXXXXXXXXXXXXXXKRKDLEDYDRLGNITLKINKSLAIAGPLLTGVATIGSTFVGSDDGLLSAMVPLVAGSMACAINGFEHGGQVGMVFEMYRNCGGIFRMLGESVESTVEENDLEKRENGEIFE----IMLGRSVLELRQVASKFASSCMD 843
EEQRNATRLFKQL +I+ + + I+EEDV+ ++++VL LDKAYPLPL+G MLEKFP +++PA WWP+ + E + + GW+ ELEME+REV+EV+K +D E+Y++LGN+ LK+N+ LAI+GP+LTG+A + S F+G G L+ +V S+A +N EHGGQVGMV EMYRN G F ++ +++++ E+RENG++FE + LGRS+ ELR +A + + S D
Sbjct: 175 EEQRNATRLFKQLRNRIEMVLREKSEDGISEEDVKEAIKRVLCLDKAYPLPLVGTMLEKFPQEFKPATWWPETKPEPTHSRTEAN--------GWNSELEMEMREVVEVIKSRDAEEYEKLGNVALKLNRVLAISGPVLTGIAAVSSGFIGHGSG-LAGVVATTCASLAAVVNTLEHGGQVGMVVEMYRNSAGFFSLMEDTIKT-------ERRENGQVFETKVALKLGRSLSELRDLARRSSLSRFD 406
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 133..153 |
| IPR027949 | Petal formation-expressed | PFAM | PF14476 | Chloroplast_duf | coord: 1..269
e-value: 3.1E-105
score: 351.7 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat4g005840.1_Ps_Cameor_v1a ID=Psat4g005840.1_Ps_Cameor_v1a; Name=Psat4g005840.1; organism=Pisum sativum; type=mRNA; length=915bp
ATGATTACACTTGCTGCTACAACATTAACCGGTGTTGCAGCTGCAAGTGG
TGCTATTGGTGCACAACTTTTGGCTCTGAAACTATCATCCACTCTTTTGT
TTTCTGCAGCAACTTGTATGCTTCTTGTCATGAACAAGATTCAACCTTCA
TAACTAGCTGAAGAGCAAAGAAATGCTACAAGACTATTCAAACAGCTTTG
GACTCAAATCCAAACCAAAATCAGTCTTGGTAATCTTATTACCGAGGAAG
ATGTGGAATCTTCAATGGAGAAAGTGTTGGCACTTGACAAAGCTTATCCA
CTTCCTTTGTTAGGAGCTATGCTTGAAAAGTTTCCTTCAAAATATGAACC
TGCTGTTTGGTGGCCTCAAAAAAGAAGAGAAGGAAATGCAGCAGAAAGAA
AGATGAAGAGGAATAATAATAGTAGTAGTAATGGATGGAGTGAAGAATTA
GAAATGGAACTGAGAGAAGTTATTGAAGTTATGAAGAGAAAAGACTTAGA
GGATTATGACAGACTTGGGAATATAACGTTAAAGATTAACAAGAGTTTGG
CAATAGCAGGTCCATTACTCACTGGAGTTGCAACTATAGGTTCCACATTT
GTAGGAAGTGATGATGGGTTGCTTTCAGCCATGGTTCCTTTGGTGGCAGG
GTCAATGGCTTGTGCAATAAATGGTTTTGAGCATGGCGGACAAGTTGGTA
TGGTGTTTGAAATGTACAGAAACTGTGGTGGAATTTTCAGGATGTTGGGA
GAGAGTGTTGAAAGCACAGTTGAGGAGAATGATTTGGAAAAAAGAGAAAA
TGGTGAGATATTTGAAATAATGTTGGGAAGAAGTGTTTTGGAGCTAAGAC
AAGTTGCTTCAAAATTTGCTTCTTCTTGTATGGACGAATTTGCTAGTAAG
CTTTTTTTAAGATAA back to topprotein sequence of Psat4g005840.1_Ps_Cameor_v1a >Psat4g005840.1_Ps_Cameor_v1a ID=Psat4g005840.1_Ps_Cameor_v1a; Name=Psat4g005840.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=291bp
MITLAATTLTGVAAASGAIGAQLLALKLSSTLLFSAATSEEQRNATRLFK
QLWTQIQTKISLGNLITEEDVESSMEKVLALDKAYPLPLLGAMLEKFPSK
YEPAVWWPQKRREGNAAERKMKRNNNSSSNGWSEELEMELREVIEVMKRK
DLEDYDRLGNITLKINKSLAIAGPLLTGVATIGSTFVGSDDGLLSAMVPL
VAGSMACAINGFEHGGQVGMVFEMYRNCGGIFRMLGESVESTVEENDLEK
RENGEIFEIMLGRSVLELRQVASKFASSCMDEFASKLFLR* back to topmRNA from alignment at chr4LG4:6345095..6346009+ Legend: CDSpolypeptideexon Hold the cursor over a type above to highlight its positions in the sequence below. >Psat4g005840.1_Ps_Cameor_v1a ID=Psat4g005840.1_Ps_Cameor_v1a; Name=Psat4g005840.1; organism=Pisum sativum; type=mRNA; length=915bp; location=Sequence derived from: chr4LG4:6345095..6346009+ (Pisum sativum
ATGATTACACTTGCTGCTACAACATTAACCGGTGTTGCAGCTGCAAGTGG
TGCTATTGGTGCACAACTTTTGGCTCTGAAACTATCATCCACTCTTTTGT
TTTCTGCAGCAACTTGTATGCTTCTTGTCATGAACAAGATTCAACCTTCA
TAACTAGCTGAAGAGCAAAGAAATGCTACAAGACTATTCAAACAGCTTTG
GACTCAAATCCAAACCAAAATCAGTCTTGGTAATCTTATTACCGAGGAAG
ATGTGGAATCTTCAATGGAGAAAGTGTTGGCACTTGACAAAGCTTATCCA
CTTCCTTTGTTAGGAGCTATGCTTGAAAAGTTTCCTTCAAAATATGAACC
TGCTGTTTGGTGGCCTCAAAAAAGAAGAGAAGGAAATGCAGCAGAAAGAA
AGATGAAGAGGAATAATAATAGTAGTAGTAATGGATGGAGTGAAGAATTA
GAAATGGAACTGAGAGAAGTTATTGAAGTTATGAAGAGAAAAGACTTAGA
GGATTATGACAGACTTGGGAATATAACGTTAAAGATTAACAAGAGTTTGG
CAATAGCAGGTCCATTACTCACTGGAGTTGCAACTATAGGTTCCACATTT
GTAGGAAGTGATGATGGGTTGCTTTCAGCCATGGTTCCTTTGGTGGCAGG
GTCAATGGCTTGTGCAATAAATGGTTTTGAGCATGGCGGACAAGTTGGTA
TGGTGTTTGAAATGTACAGAAACTGTGGTGGAATTTTCAGGATGTTGGGA
GAGAGTGTTGAAAGCACAGTTGAGGAGAATGATTTGGAAAAAAGAGAAAA
TGGTGAGATATTTGAAATAATGTTGGGAAGAAGTGTTTTGGAGCTAAGAC
AAGTTGCTTCAAAATTTGCTTCTTCTTGTATGGACGAATTTGCTAGTAAG
CTTTTTTTAAGATAA back to topCoding sequence (CDS) from alignment at chr4LG4:6345095..6346009+ >Psat4g005840.1_Ps_Cameor_v1a ID=Psat4g005840.1_Ps_Cameor_v1a; Name=Psat4g005840.1; organism=Pisum sativum; type=CDS; length=1746bp; location=Sequence derived from: chr4LG4:6345095..6346009+ (Pisum sativum
ATGATTACACTTGCTGCTACAACATTAACCGGTGTTGCAGCTGCAAGTGG
TGCTATTGGTGCACAACTTTTGGCTCTGAAACTATCATCCACTCTTTTGT
TTTCTGCAGCAACTTATGATTACACTTGCTGCTACAACATTAACCGGTGT
TGCAGCTGCAAGTGGTGCTATTGGTGCACAACTTTTGGCTCTGAAACTAT
CATCCACTCTTTTGTTTTCTGCAGCAACTTCTGAAGAGCAAAGAAATGCT
ACAAGACTATTCAAACAGCTTTGGACTCAAATCCAAACCAAAATCAGTCT
TGGTAATCTTATTACCGAGGAAGATGTGGAATCTTCAATGGAGAAAGTGT
TGGCACTTGACAAAGCTTATCCACTTCCTTTGTTAGGAGCTATGCTTGAA
AAGTTTCCTTCAAAATATGAACCTGCTGTTTGGTGGCCTCAAAAAAGAAG
AGAAGGAAATGCAGCAGAAAGAAAGATGAAGAGGAATAATAATAGTAGTA
GTAATGGATGGAGTGAAGAATTAGAAATGGAACTGAGAGAAGTTATTGAA
GTTATGAAGAGAAAAGACTTAGAGGATTATGACAGACTTGGGAATATAAC
GTTAAAGATTAACAAGAGTTTGGCAATAGCAGGTCCATTACTCACTGGAG
TTGCAACTATAGGTTCCACATTTGTAGGAAGTGATGATGGGTTGCTTTCA
GCCATGGTTCCTTTGGTGGCAGGGTCAATGGCTTGTGCAATAAATGGTTT
TGAGCATGGCGGACAAGTTGGTATGGTGTTTGAAATGTACAGAAACTGTG
GTGGAATTTTCAGGATGTTGGGAGAGAGTGTTGAAAGCACAGTTGAGGAG
AATGATTTGGAAAAAAGAGAAAATGGTGAGATATTTGAAATAATGTTGGG
AAGAAGTGTTTTGGAGCTAAGACAAGTTGCTTCAAAATTTGCTTCTTCTT
GTATGGACGAATTTGCTAGTAAGCTTTTTTTAAGATAACTGAAGAGCAAA
GAAATGCTACAAGACTATTCAAACAGCTTTGGACTCAAATCCAAACCAAA
ATCAGTCTTGGTAATCTTATTACCGAGGAAGATGTGGAATCTTCAATGGA
GAAAGTGTTGGCACTTGACAAAGCTTATCCACTTCCTTTGTTAGGAGCTA
TGCTTGAAAAGTTTCCTTCAAAATATGAACCTGCTGTTTGGTGGCCTCAA
AAAAGAAGAGAAGGAAATGCAGCAGAAAGAAAGATGAAGAGGAATAATAA
TAGTAGTAGTAATGGATGGAGTGAAGAATTAGAAATGGAACTGAGAGAAG
TTATTGAAGTTATGAAGAGAAAAGACTTAGAGGATTATGACAGACTTGGG
AATATAACGTTAAAGATTAACAAGAGTTTGGCAATAGCAGGTCCATTACT
CACTGGAGTTGCAACTATAGGTTCCACATTTGTAGGAAGTGATGATGGGT
TGCTTTCAGCCATGGTTCCTTTGGTGGCAGGGTCAATGGCTTGTGCAATA
AATGGTTTTGAGCATGGCGGACAAGTTGGTATGGTGTTTGAAATGTACAG
AAACTGTGGTGGAATTTTCAGGATGTTGGGAGAGAGTGTTGAAAGCACAG
TTGAGGAGAATGATTTGGAAAAAAGAGAAAATGGTGAGATATTTGAAATA
ATGTTGGGAAGAAGTGTTTTGGAGCTAAGACAAGTTGCTTCAAAATTTGC
TTCTTCTTGTATGGACGAATTTGCTAGTAAGCTTTTTTTAAGATAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR027949 | Chloroplast_duf |
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