Psat4g006200.1
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Psat4g006200.1 vs. DB:Swiss
Match: TYDP2_MOUSE (Tyrosyl-DNA phosphodiesterase 2 OS=Mus musculus OX=10090 GN=Tdp2 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.023e-14 Identity = 71/274 (25.91%), Postives = 116/274 (42.34%), Query Frame = 1
Query: 187 YNVWFREDLELHKRMKAIGDLVQLHSPDIICFQEVTPDIYDIFKRSSWWNVYHCSVSSDKAHSRSYFCMLL---SKLPVKSFSTKSFSNSIMGRELCIAEVEDVSGKSLVVATSHLESPSPAPPKWDQMFTKERVEQANEALNILKRYPN---VVFGGDMNWDEK---KDGQYPLQDGWVDAWSEL-RPNETGWTYDTKSNQMLTGNRTLQKRLDRFVCHLRDLEI--SSIDMIGMDEIPGVSHIKEKKVRSEIKQLVLPVLPSDHYGLLLTIS 972
+N+ + L +R + + + L+SPD++ QEV P K+ + S + + YF +L ++ KS F N+ M R L V + G + TSHLES + + ER+ Q L ++ P+ V+F GD N ++ K G P D DAW L +P +T+DTK+N L + R DR + + S+D++G++ +L PSDH+GLL T++
Sbjct: 129 WNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAYLKKRA------ASYTIITGNEEGYFTAILLKKGRVKFKSQEIIPFPNTKMMRNLLCVNVS-LGGNEFCLMTSHLES--------TREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIKCGGLP--DNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLVGLE------------------KLDCGRFPSDHWGLLCTLN 367
BLAST of Psat4g006200.1 vs. DB:Swiss
Match: TYDP2_HUMAN (Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens OX=9606 GN=TDP2 PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.198e-14 Identity = 74/264 (28.03%), Postives = 115/264 (43.56%), Query Frame = 1
Query: 217 LHKRMKAIGDLVQLHSPDIICFQEVTPDIYDIF-KRSSWWNVYHCSVSSDKAHSRSYFCMLL---SKLPVKSFSTKSFSNSIMGRELCIAEVEDVSGKSLVVATSHLESPSPAPPKWDQMFTKERVEQANEALNILKRYP---NVVFGGDMNWDEKKDGQY-PLQDGWVDAWSEL-RPNETGWTYDTKSNQMLTGNRTLQKRLDR--FVCHLRDLEI--SSIDMIGMDEIPGVSHIKEKKVRSEIKQLVLPVLPSDHYGLLLTI 969
L +R + + + L+SPD+I QEV P Y KRSS + + H YF ++ S++ +KS F ++ M R L V +VSG L + TSHLES + ER+ Q L ++ P V+F GD N +++ + L + VD W L +P +T+DT+ N L + R DR F + I S+D++G++ +L PSDH+GLL +
Sbjct: 129 LSERARGVCSYLALYSPDVIFLQEVIPPYYSYLKKRSSNYEII-------TGHEEGYFTAIMLKKSRVKLKSQEIIPFPSTKMMRNLLCVHV-NVSGNELCLMTSHLES--------TRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAACKLRFDRIFFRAAAEEGHIIPRSLDLLGLE------------------KLDCGRFPSDHWGLLCNL 358
BLAST of Psat4g006200.1 vs. DB:Swiss
Match: TYDP2_XENTR (Tyrosyl-DNA phosphodiesterase 2 OS=Xenopus tropicalis OX=8364 GN=tdp2 PE=2 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 1.599e-14 Identity = 73/268 (27.24%), Postives = 121/268 (45.15%), Query Frame = 1
Query: 187 YNVWFREDLELHKRMKAIGDLVQLHSPDIICFQEVTPDIYDIFKRSSWWNVYHCSVSSDKAHSRSYF-CMLLSKLPVKSFSTK--SFSNSIMGRELCIAEVEDVSGKSLVVATSHLESPSPAPPKWDQMFTKERVEQANEALNILKRYP---NVVFGGDMNWDEK---KDGQYPLQDGWVDAWSEL-RPNETGWTYDTKSNQMLTGNRTLQKRLDRFVCHLRDLEISSIDMIGMDEIPGVSHIKEKKVRSEIKQLVLPVLPSDHYGLL 960
+N+ ++ + +R + + + L+SPD++ QEV P Y+ K+ + S + + YF M+L K VK S + + +++M R L +A V ++SG S+ + TSHLES +KER++Q + L + P V+FGGD N ++ K G P + +D W L +P +T+DTK N+ L + R DR G I + + ++L PSDH+GLL
Sbjct: 130 WNIDGLDESNVAERARGVCSYLALYSPDVVFLQEVIPPYYEYLKKRA------VSYTIITGNEDEYFTAMMLKKSRVKLISQEIVPYPSTVMMRNLLVANV-NISGNSICLMTSHLESTKD--------HSKERLKQLDIVLKKMMDAPPLATVIFGGDTNLRDQEVAKIGGMP--NNILDVWDFLGKPEHCRYTWDTKVNKNLRAPYICRLRFDRIFFRASQ--------------EGSQVIPQSLYLAGTEKLDCGRFPSDHWGLL 366
BLAST of Psat4g006200.1 vs. DB:Swiss
Match: TYDP2_XENLA (Tyrosyl-DNA phosphodiesterase 2 OS=Xenopus laevis OX=8355 GN=tdp2 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.865e-14 Identity = 75/266 (28.20%), Postives = 125/266 (46.99%), Query Frame = 1
Query: 187 YNVWFREDLELHKRMKAIGDLVQLHSPDIICFQEVTPDIYDIFKRSSWWNVYHCSVSSDKAHSRSYF-CMLLSKLPVKSFSTK--SFSNSIMGRELCIAEVEDVSGKSLVVATSHLESPSPAPPKWDQMFTKERVEQANEALNILKRYP---NVVFGGDMNWDEKKDGQY-PLQDGWVDAWSEL-RPNETGWTYDTKSNQMLTGNRTLQKRLDRFVCHLRDLEISSIDMIGMDEIPGVSHIKEKKVRSEIKQLVLPVLPSDHYGLL 960
+N+ ++ + +R +A+ + L++PD++ QEV P + K+ + S + YF M+L K VK S + + +++M R L +A V ++SG S+ + TSHLES +KER++Q + L + P V+FGGD N +++ + L + +D W L +P +T+DTK N L T + R DR + M G IP ++ V +E +L PSDH+GLL
Sbjct: 128 WNIDGLDESNVAERARAVCSCLALYTPDVVFLQEVIPPYCEYLKKRA------VSYKIITGNEDEYFTAMMLKKSRVKLISQEIVPYPSTLMMRNLLVANV-NISGNSICLMTSHLESTKD--------HSKERLKQLDTVLKKMMDAPPSATVIFGGDTNLRDQEVAKIGGLPNTILDVWEFLGKPEHCRYTWDTKLNNNLRACYTSRLRFDRI--------LYRASMEGSQVIPQFLNL----VGTE--KLDCGRFPSDHWGLL 364
BLAST of Psat4g006200.1 vs. DB:Swiss
Match: TYDP2_BOVIN (Tyrosyl-DNA phosphodiesterase 2 OS=Bos taurus OX=9913 GN=TDP2 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.063e-13 Identity = 74/263 (28.14%), Postives = 110/263 (41.83%), Query Frame = 1
Query: 217 LHKRMKAIGDLVQLHSPDIICFQEVTPDIYDIFKRSSWWNVYHCSVSSDKAHSRSYFCMLL---SKLPVKSFSTKSFSNSIMGRELCIAEVEDVSGKSLVVATSHLESPSPAPPKWDQMFTKERVEQANEALNILKRYPN---VVFGGDMNW-DEKKDGQYPLQDGWVDAWSEL-RPNETGWTYDTKSNQMLTGNRTLQKRLDR--FVCHLRDLEI--SSIDMIGMDEIPGVSHIKEKKVRSEIKQLVLPVLPSDHYGLLLTI 969
L +R + + + L+SPD+I QEV P Y K+ + S YF ++ S++ KS F N+ M R L V VSG L + TSHLES + KER+ Q L ++ P V+F GD N D++ L + +D W L +P +T+DT+ N L + R DR F I S+D++G++ +L PSDH+GLL T+
Sbjct: 131 LLERARGVCSYLTLYSPDVIFLQEVIPPYYAYLKKKA------SSYKIITGREEGYFTAIMLKKSRVKFKSQEIIPFPNTQMMRNLLCVHV-SVSGNELCLMTSHLEST--------RGHAKERMNQFKMVLEKMQEAPGSATVIFAGDTNLRDQEVTKCGGLPNNILDVWEFLGKPKHCQYTWDTQMNSNLGIAANCKLRFDRIFFRAAAEGGHIIPQSLDLLGLE------------------KLDCGRFPSDHWGLLCTL 360
BLAST of Psat4g006200.1 vs. DB:Swiss
Match: TYDP2_RAT (Tyrosyl-DNA phosphodiesterase 2 OS=Rattus norvegicus OX=10116 GN=Tdp2 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 5.159e-13 Identity = 71/275 (25.82%), Postives = 114/275 (41.45%), Query Frame = 1
Query: 187 YNVWFREDLELHKRMKAIGDLVQLHSPDIICFQEVTPDIYDIF-KRSSWWNVYHCSVSSDKAHSRSYFCMLLSKLPVKSFSTKS---FSNSIMGRELCIAEVEDVSGKSLVVATSHLESPSPAPPKWDQMFTKERVEQANEALNILKRYPN---VVFGGDMNWDEK---KDGQYPLQDGWVDAWSEL-RPNETGWTYDTKSNQMLTGNRTLQKRLDRFVCHLRDLEI--SSIDMIGMDEIPGVSHIKEKKVRSEIKQLVLPVLPSDHYGLLLTIS 972
+N+ + L +R + + + L+SPD++ QEV P KR+ +N+ + YF +L K F + F N+ M R L V + G + TSHLES + + ER+ Q ++ + V+F GD N ++ K G P D DAW L +P +T+DTK+N L + R DR + + S+D+IG++ +L PSDH+GLL T++
Sbjct: 125 WNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPSYCAYLRKRARTYNII-------TGNEEGYFTAILLKKGRVKFKGQEIIPFPNTKMMRNLLCVNVS-LGGNEFCLMTSHLEST--------RKHSAERINQLKTVFQKMQEATDSTTVIFAGDTNLRDQEVIKCGGLP--DNVFDAWEFLGKPKHCRYTWDTKANDNLRIPAACKHRFDRIFFRAEEGHLIPQSLDLIGLE------------------RLDCGRFPSDHWGLLCTLN 363
BLAST of Psat4g006200.1 vs. DB:Swiss
Match: TYDP2_CHICK (Tyrosyl-DNA phosphodiesterase 2 OS=Gallus gallus OX=9031 GN=TDP2 PE=3 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 6.640e-12 Identity = 72/261 (27.59%), Postives = 113/261 (43.30%), Query Frame = 1
Query: 217 LHKRMKAIGDLVQLHSPDIICFQEVTPDIYDIF-KRSSWWNVYHCSVSSDKAHSRSYF-CMLLSKLPVKSFSTK--SFSNSIMGRELCIAEVEDVSGKSLVVATSHLESPSPAPPKWDQMFTKERVEQANEALNILK---RYPNVVFGGDMNWDEKKDGQY-PLQDGWVDAWSEL-RPNETGWTYDTKSNQMLTGNRTLQKRLDRF----VCHLRDLEISSIDMIGMDEIPGVSHIKEKKVRSEIKQLVLPVLPSDHYGLL 960
L +R + + + L+SPD++ QEV P I +R+ + + +V YF MLL K VK + F + M R L + V ++SG L + TSHLES + +KER++Q LN ++ + V+FGGD N + + + L D W L +P +T+DT SN L + R DR + ++D+IG++ +L PSDH+GLL
Sbjct: 136 LQERARGVCSYLALYSPDVVFLQEVIPPYLCILQRRAGGYTIIPGNVD-------GYFTAMLLKKPRVKVLKQEIIRFPTTSMMRNLLVVHV-NISGNELCLMTSHLEST--------RDHSKERMKQLQIVLNKMQEESQSTTVIFGGDTNLRDSEVAKLGGLPKNITDIWEFLGKPQHCRYTWDTSSNTNLRIESKCKLRFDRLYFRPAAEGGHIIPRNMDLIGLE------------------KLDCGRFPSDHWGLL 362
BLAST of Psat4g006200.1 vs. DB:Swiss
Match: TYDP2_CAEBR (5'-tyrosyl-DNA phosphodiesterase OS=Caenorhabditis briggsae OX=6238 GN=CBG18823 PE=3 SV=2) HSP 1 Score: 66.2402 bits (160), Expect = 8.388e-11 Identity = 63/205 (30.73%), Postives = 95/205 (46.34%), Query Frame = 1
Query: 217 LHKRMKAIGDLVQLHSPDIICFQEVTP-DIYDIFKRSSWWNVYHCSVSSDKAHSRSYFCMLLSKL-PVKSFSTKSFSNSIMGRELCIAEVEDVSGKSLVVATSHLESPSPAPPKWDQMFTKERVEQANEALNILKRYPN--VVFGGDMNWDEKKDGQYPLQDGWVDAW-SELRPNETGWTYDTKSNQMLTGNRTLQKRLDRFVCH 816
L RMKA+ +V+ +PDI+ QEV D+ I K S + +Y+ S+K + Y +L+SK+ V+ F NS M R L I E + G + + +HLES + F+ + I+ P + FGGD+N +++ P DG +DAW S +T WT+DT N G + R DR H
Sbjct: 109 LATRMKAVATIVKKVNPDILFLQEVVDRDLEPIDKLQSLYKIYY----SNKG-CQYYTAILVSKMFEVEKHDVVHFQNSGMYRTLQIVE-GSIGGMKVFLVNTHLESMRDHRAQRMAQFSF----CMDRCAEIIANNPGCFLFFGGDLNLRDEEISSIP--DGVLDAWVSAGCDTKTKWTWDTYKNDNKQGFNGAKMRFDRIYWH 301
BLAST of Psat4g006200.1 vs. DB:Swiss
Match: TYDP2_CAEEL (5'-tyrosyl-DNA phosphodiesterase OS=Caenorhabditis elegans OX=6239 GN=Y63D3A.4 PE=1 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 1.485e-10 Identity = 65/206 (31.55%), Postives = 96/206 (46.60%), Query Frame = 1
Query: 217 LHKRMKAIGDLVQLHSPDIICFQEVTP-DIYDIFKRSSWWNVYHCSVSSDKAHSRSYFCMLLSKL-PVKSFSTKSFSNSIMGRELCIAEVEDVSGKSLVVATSHLESPSPAPPKWDQMF------TKERVEQANEALNILKRYPNVVFGGDMNWDEKKDGQYPLQDGWVDAWSEL-RPNETGWTYDTKSNQMLTGNRTLQKRLDRF 807
L RMKA+ +V+ +PDI+ QEV D+ I K S + +Y+ S+K + Y +L+SK+ V+ F NS M R L I E + G + + +HLES P+ F +E + Q AL V FGGD+N +++ + P DG DAW N+T +T+DT N G + R DR
Sbjct: 135 LLTRMKAVAHIVKNVNPDILFLQEVVDRDLAPIDKLQSLYKIYY----SNKG-CQYYTAILVSKMFDVEKHDVIHFQNSGMYRTLQILE-GSIGGLKVFLLNTHLESTREHRPQRCAQFGFCMDKVREIIAQNPGAL--------VFFGGDLNLRDEEVSRVP--DGVKDAWEAAGSDNKTKFTWDTFKNDNKQGFHGAKMRFDRL 324
BLAST of Psat4g006200.1 vs. DB:Swiss
Match: TYDP2_DANRE (Tyrosyl-DNA phosphodiesterase 2 OS=Danio rerio OX=7955 GN=tdp2 PE=1 SV=3) HSP 1 Score: 62.7734 bits (151), Expect = 1.369e-9 Identity = 66/241 (27.39%), Postives = 107/241 (44.40%), Query Frame = 1
Query: 187 YNVWFREDLELHKRMKAIGDLVQLHSPDIICFQEVTPDIYDIFKRSSWWNVYHCSVSSDKAHSRSYFC-MLLSKLPVKSFSTK--SFSNSIMGRELCIAEVEDVSGKSLVVATSHLESPSPAPPKWDQMFTKERVEQANEALNILKRYPN---VVFGGDMNW-DEKKDGQYPLQDGWVDAWSELRPNE-TGWTYDTKSNQMLTGNRTLQKRLDRFVCHLRDLEIS------SIDMIGMDEI 867
+NV + L L R + + + L++PD++ QE+ P K+ + ++ + YF ++L K VK ++ F + M R L IA+V SG+ L + TSHLES ++ER +Q L +K P V+F GD N D + L G D W +L E +T+DTK+N T + R DR LR + + + +IGM+++
Sbjct: 128 WNVDGLDTLNLADRARGLCSYLALYTPDVVFLQELIPAYVQYLKKRAVSYLFF------EGSDDGYFTGIMLRKSRVKFLESEIICFPTTQMMRNLLIAQVT-FSGQKLYLMTSHLESCKNQ--------SQERTKQLRVVLQKIKEAPEDAIVIFAGDTNLRDAEVANVGGLPAGVCDVWEQLGKQEHCRYTWDTKANSNKTVPYVSRCRFDRIF--LRSAKTAPPVTPDHMALIGMEKL 351 The following BLAST results are available for this feature:
BLAST of Psat4g006200.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat4g006200.1_Ps_Cameor_v1a ID=Psat4g006200.1_Ps_Cameor_v1a; Name=Psat4g006200.1; organism=Pisum sativum; type=mRNA; length=4511bpback to top protein sequence of Psat4g006200.1_Ps_Cameor_v1a >Psat4g006200.1_Ps_Cameor_v1a ID=Psat4g006200.1_Ps_Cameor_v1a; Name=Psat4g006200.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=385bpback to top mRNA from alignment at chr4LG4:6577076..6581586- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Psat4g006200.1_Ps_Cameor_v1a ID=Psat4g006200.1_Ps_Cameor_v1a; Name=Psat4g006200.1; organism=Pisum sativum; type=mRNA; length=4511bp; location=Sequence derived from: chr4LG4:6577076..6581586- (Pisum sativumback to top Coding sequence (CDS) from alignment at chr4LG4:6577076..6581586- >Psat4g006200.1_Ps_Cameor_v1a ID=Psat4g006200.1_Ps_Cameor_v1a; Name=Psat4g006200.1; organism=Pisum sativum; type=CDS; length=2310bp; location=Sequence derived from: chr4LG4:6577076..6581586- (Pisum sativumback to top |