|
|
Transcript Overview
| Name | Psat4g006720.1 |
|---|
| Unique Name | Psat4g006720.1_Ps_Cameor_v1a |
|---|
| Type | mRNA |
|---|
| Organism | Pisum sativum (pea) |
|---|
| Sequence length | 563 |
|---|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g006720.1 | Psat4g006720.1_Ps_Cameor_v1a-protein | Pisum sativum | polypeptide |
| Psat4g006720.1_Ps_Cameor_v1a | Psat4g006720.1_Ps_Cameor_v1a | Pisum sativum | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g006720.1.five_prime_utr1 | Psat4g006720.1.five_prime_utr1_Ps_Cameor_v1a | Pisum sativum | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g006720.1.exon1 | Psat4g006720.1.exon1_Ps_Cameor_v1a | Pisum sativum | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g006720.1.cds1 | Psat4g006720.1.cds1_Ps_Cameor_v1a | Pisum sativum | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g006720.1.three_prime_utr1 | Psat4g006720.1.three_prime_utr1_Ps_Cameor_v1a | Pisum sativum | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 83..104 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..33 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat4g006720.1_Ps_Cameor_v1a ID=Psat4g006720.1_Ps_Cameor_v1a; Name=Psat4g006720.1; organism=Pisum sativum; type=mRNA; length=563bp
AATTCTCGTAAAAAATAATATTTGAAATTAATTATTCTTGTATAAGAAAT
GGGAAACTCTTGCATGGCAGCATCGTCAATGGAATGGGATGGAGAGGACT
GGGAATCTTTGAAGCAGCCAAAGCCATGTCCATCATCATCAAGCAACAAG
GTGTTTGACGAAGCTGTTCATCTTGATCATCATCGGAATAAGGAGAATGA
TATGTTAGGTAAGCTTAGAGCTTCTTGTGATGCAAATGGTAAAGTCACGT
TGAAGATTTCAAAGTCTGAGCTAGCTGAGTTATTAGGAGCTATACAACAG
AATAGTAATAATCAGCAGCCGCAGAAGCAGATGAAGATGAAGAAGAAGAA
GGAATCAGGTTCTGCAGAACAAGTTCTGTTTCGGTTAATAAAAGCTAGAG
ATCATGAAGTTGCAGAAAAGCATCATTGGGGTAGTCACTGGAAACCGGTG
TTAGAAACCATTCCTGAATGTTAATCACTAGTAAATATTACTGGGGTTAG
TATAGTGGTTAAGCCACCTATCGACTTGTACATTTTAGTGTTAGAAACCA
CTTCAATTATATA back to topprotein sequence of Psat4g006720.1_Ps_Cameor_v1a >Psat4g006720.1_Ps_Cameor_v1a ID=Psat4g006720.1_Ps_Cameor_v1a; Name=Psat4g006720.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=142bp
MGNSCMAASSMEWDGEDWESLKQPKPCPSSSSNKVFDEAVHLDHHRNKEN
DMLGKLRASCDANGKVTLKISKSELAELLGAIQQNSNNQQPQKQMKMKKK
KESGSAEQVLFRLIKARDHEVAEKHHWGSHWKPVLETIPEC* back to topmRNA from alignment at chr4LG4:8296955..8297517+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Psat4g006720.1_Ps_Cameor_v1a ID=Psat4g006720.1_Ps_Cameor_v1a; Name=Psat4g006720.1; organism=Pisum sativum; type=mRNA; length=563bp; location=Sequence derived from: chr4LG4:8296955..8297517+ (Pisum sativum
AATTCTCGTAAAAAATAATATTTGAAATTAATTATTCTTGTATAAGAAAT
GGGAAACTCTTGCATGGCAGCATCGTCAATGGAATGGGATGGAGAGGACT
GGGAATCTTTGAAGCAGCCAAAGCCATGTCCATCATCATCAAGCAACAAG
GTGTTTGACGAAGCTGTTCATCTTGATCATCATCGGAATAAGGAGAATGA
TATGTTAGGTAAGCTTAGAGCTTCTTGTGATGCAAATGGTAAAGTCACGT
TGAAGATTTCAAAGTCTGAGCTAGCTGAGTTATTAGGAGCTATACAACAG
AATAGTAATAATCAGCAGCCGCAGAAGCAGATGAAGATGAAGAAGAAGAA
GGAATCAGGTTCTGCAGAACAAGTTCTGTTTCGGTTAATAAAAGCTAGAG
ATCATGAAGTTGCAGAAAAGCATCATTGGGGTAGTCACTGGAAACCGGTG
TTAGAAACCATTCCTGAATGTTAATCACTAGTAAATATTACTGGGGTTAG
TATAGTGGTTAAGCCACCTATCGACTTGTACATTTTAGTGTTAGAAACCA
CTTCAATTATATA back to topCoding sequence (CDS) from alignment at chr4LG4:8296955..8297517+ >Psat4g006720.1_Ps_Cameor_v1a ID=Psat4g006720.1_Ps_Cameor_v1a; Name=Psat4g006720.1; organism=Pisum sativum; type=CDS; length=852bp; location=Sequence derived from: chr4LG4:8296955..8297517+ (Pisum sativum
ATGGGAAACTCTTGCATGGCAGCATCGTCAATGGAATGGGATGGAGAGGA
CTGGGAATCTTTGAAGCAGCCAAAGCCATGTCCATCATCATCAAGCAACA
AGGTGTTTGACGAAGCTGTTCATCTTGATCATCATCGGAATAAGGAGAAT
GATATGTTAGGTAAGCTTAGAGCTTCTTGTGATGCAAATGGTAAAGTCAC
GTTGAAGATTTCAAAGTCTGAGCTAGCTGAGTTATTAGGAGCTATACAAC
AGAATAGTAATAATCAGCAGCCGCAGAAGCAGATGAAGATGAAGAAGAAG
AAGGAATCAGGTTCTGCAGAACAAGTTCTGTTTCGGTTAATAAAAGCTAG
AGATCATGAAGTTGCAGAAAAGCATCATTGGGGTAGTCACTGGAAACCGG
TGTTAGAAACCATTCCTGAATGTTAAATGGGAAACTCTTGCATGGCAGCA
TCGTCAATGGAATGGGATGGAGAGGACTGGGAATCTTTGAAGCAGCCAAA
GCCATGTCCATCATCATCAAGCAACAAGGTGTTTGACGAAGCTGTTCATC
TTGATCATCATCGGAATAAGGAGAATGATATGTTAGGTAAGCTTAGAGCT
TCTTGTGATGCAAATGGTAAAGTCACGTTGAAGATTTCAAAGTCTGAGCT
AGCTGAGTTATTAGGAGCTATACAACAGAATAGTAATAATCAGCAGCCGC
AGAAGCAGATGAAGATGAAGAAGAAGAAGGAATCAGGTTCTGCAGAACAA
GTTCTGTTTCGGTTAATAAAAGCTAGAGATCATGAAGTTGCAGAAAAGCA
TCATTGGGGTAGTCACTGGAAACCGGTGTTAGAAACCATTCCTGAATGTT
AA back to top
|
