Psat4g006960.1

Transcript Overview
NamePsat4g006960.1
Unique NamePsat4g006960.1_Ps_Cameor_v1a
TypemRNA
OrganismPisum sativum (pea)
Sequence length321
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4LG4supercontigchr4LG4:8528149..8528469 +Pisum sativum Cameor genome v1an/a
chr4LG4supercontigchr4LG4:8528149..8528469 +Pisum sativum Cameor genome v1an/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan: P. sativum Cameor genome v1a2019-09-12
BLAST: P. sativum Cameor genome v1a vs. Swissprot2019-09-12
Pisum sativum Cameor genome v1a2019-09-06
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
psvuR303Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuR359Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pspvR348Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvR375Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pszwsR282Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pszwsR306Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pstifR273Vicia faba cv. Tiffany genome v1.0Vicia faba
pstifR369Vicia faba cv. Tiffany genome v1.0Vicia faba
psvfhR268Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
psvfhR359Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
psvrvR259Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvrvR298Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvssR344Vicia sativa cv. Studenica genome v1.0Vicia sativa
psvuaR289Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
psvuaR313Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
psvssR430Vicia sativa cv. Studenica genome v1.0Vicia sativa
psvumR287Vigna umbellata FF25 genome v1.0Vigna umbellata
psvumR398Vigna umbellata FF25 genome v1.0Vigna umbellata
psvvaR323Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvvaR389Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvasR279Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvstR288Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvasR360Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvstR377Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvunR282Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
psvunR340Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vigan.01G549700.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vum_01G04183.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Psat4g006960Psat4g006960_Ps_Cameor_v1aPisum sativumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Psat4g006960.1Psat4g006960.1_Ps_Cameor_v1a-proteinPisum sativumpolypeptide
Psat4g006960.1_Ps_Cameor_v1aPsat4g006960.1_Ps_Cameor_v1aPisum sativumpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g006960.1.cds1Psat4g006960.1.cds1_Ps_Cameor_v1aPisum sativumCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g006960.1.exon1Psat4g006960.1.exon1_Ps_Cameor_v1aPisum sativumexon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g006960.1.three_prime_utr1Psat4g006960.1.three_prime_utr1_Ps_Cameor_v1aPisum sativumthree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Psat4g006960.1 vs.
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>Psat4g006960.1_Ps_Cameor_v1a ID=Psat4g006960.1_Ps_Cameor_v1a; Name=Psat4g006960.1; organism=Pisum sativum; type=mRNA; length=321bp
ATGGGAAACTGTTGCAAACCAGCGTCGTCAATGGAGTGGGGTGGAGAGGA
CTGGGAATCTTTGAAGGTGTATGACGAAGCTGTTTATCTTGATCATCATC
AGAATAAGGAGAATGATGTATTAGGAAAGCTTAGAACTTCTTGTGATGCA
AATGGGAAAGTCACGTTGAAGATTTCAAAGTGCGAGCTAGCTGAGTTATT
AGGAGCAATACAACAGAAAAATAATAATGATCAACAAACGCAGAAGTAGA
TGAAGAAAAAGAAGAAGGAATTAGGTTCTGCAGAACAAGTTTTGTTTCGG
TTAATAAAGGCTAGAGATCAC
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protein sequence of Psat4g006960.1_Ps_Cameor_v1a

>Psat4g006960.1_Ps_Cameor_v1a ID=Psat4g006960.1_Ps_Cameor_v1a; Name=Psat4g006960.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=83bp
MGNCCKPASSMEWGGEDWESLKVYDEAVYLDHHQNKENDVLGKLRTSCDA
NGKVTLKISKCELAELLGAIQQKNNNDQQTQK*
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mRNA from alignment at chr4LG4:8528149..8528469+

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Psat4g006960.1_Ps_Cameor_v1a ID=Psat4g006960.1_Ps_Cameor_v1a; Name=Psat4g006960.1; organism=Pisum sativum; type=mRNA; length=321bp; location=Sequence derived from: chr4LG4:8528149..8528469+ (Pisum sativum
ATGGGAAACTGTTGCAAACCAGCGTCGTCAATGGAGTGGGGTGGAGAGGA
CTGGGAATCTTTGAAGGTGTATGACGAAGCTGTTTATCTTGATCATCATC
AGAATAAGGAGAATGATGTATTAGGAAAGCTTAGAACTTCTTGTGATGCA
AATGGGAAAGTCACGTTGAAGATTTCAAAGTGCGAGCTAGCTGAGTTATT
AGGAGCAATACAACAGAAAAATAATAATGATCAACAAACGCAGAAGTAGA
TGAAGAAAAAGAAGAAGGAATTAGGTTCTGCAGAACAAGTTTTGTTTCGG
TTAATAAAGGCTAGAGATCAC
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Coding sequence (CDS) from alignment at chr4LG4:8528149..8528469+

>Psat4g006960.1_Ps_Cameor_v1a ID=Psat4g006960.1_Ps_Cameor_v1a; Name=Psat4g006960.1; organism=Pisum sativum; type=CDS; length=498bp; location=Sequence derived from: chr4LG4:8528149..8528469+ (Pisum sativum
ATGGGAAACTGTTGCAAACCAGCGTCGTCAATGGAGTGGGGTGGAGAGGA
CTGGGAATCTTTGAAGGTGTATGACGAAGCTGTTTATCTTGATCATCATC
AGAATAAGGAGAATGATGTATTAGGAAAGCTTAGAACTTCTTGTGATGCA
AATGGGAAAGTCACGTTGAAGATTTCAAAGTGCGAGCTAGCTGAGTTATT
AGGAGCAATACAACAGAAAAATAATAATGATCAACAAACGCAGAAGTAGA
TGGGAAACTGTTGCAAACCAGCGTCGTCAATGGAGTGGGGTGGAGAGGAC
TGGGAATCTTTGAAGGTGTATGACGAAGCTGTTTATCTTGATCATCATCA
GAATAAGGAGAATGATGTATTAGGAAAGCTTAGAACTTCTTGTGATGCAA
ATGGGAAAGTCACGTTGAAGATTTCAAAGTGCGAGCTAGCTGAGTTATTA
GGAGCAATACAACAGAAAAATAATAATGATCAACAAACGCAGAAGTAG
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