Psat4g015760.1

Transcript Overview
NamePsat4g015760.1
Unique NamePsat4g015760.1_Ps_Cameor_v1a
TypemRNA
OrganismPisum sativum (pea)
Sequence length1666
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4LG4supercontigchr4LG4:22079990..22081655 +Pisum sativum Cameor genome v1an/a
chr4LG4supercontigchr4LG4:22079990..22081655 +Pisum sativum Cameor genome v1an/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan: P. sativum Cameor genome v1a2019-09-12
BLAST: P. sativum Cameor genome v1a vs. Swissprot2019-09-12
Pisum sativum Cameor genome v1a2019-09-06
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pspsL08Pisum sativum Cameor genome v1aPisum sativum
crpsL800Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
caipsL740Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipsL767Cicer arietinum ICC 4958 genome v2Cicer arietinum
capsL617Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capsL624Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
psvuR301Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuR370Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pspvR346Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvR393Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpsL338Cajanus cajan Asha genome v1.0Cajanus cajan
anpsL0016Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpsL0017Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpsL0204Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpsL0209Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpsL0285Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpsL0320Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspsL529Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pszwsR289Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pszwsR305Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pstifR282Vicia faba cv. Tiffany genome v1.0Vicia faba
pstifR374Vicia faba cv. Tiffany genome v1.0Vicia faba
psvfhR277Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
psvfhR356Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
psvrvR288Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvrvR296Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvssR336Vicia sativa cv. Studenica genome v1.0Vicia sativa
psvuaR288Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
psvuaR326Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
psvssR427Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpsL275Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpsL617Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpsL242Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpsL249Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpsL543Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpsL039Cicer arietinum
carpsL619Cicer arietinum
carpsL648Cicer arietinum
ccapsL153Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapsL160Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapsL166Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapsL716Cajanus cajan cv. Asha genome v2.0Cajanus cajan
psvumR285Vigna umbellata FF25 genome v1.0Vigna umbellata
psvumR294Vigna umbellata FF25 genome v1.0Vigna umbellata
psvumR385Vigna umbellata FF25 genome v1.0Vigna umbellata
psvvaR322Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvvaR391Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvasR277Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvasR290Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvstR286Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvstR297Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvasR346Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvstR364Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvasR392Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvstR409Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvunR280Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pspvfR309Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
psvunR352Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pspvfR363Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pspvfR408Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Psat4g015760Psat4g015760_Ps_Cameor_v1aPisum sativumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Psat4g015760.1Psat4g015760.1_Ps_Cameor_v1a-proteinPisum sativumpolypeptide
Psat4g015760.1_Ps_Cameor_v1aPsat4g015760.1_Ps_Cameor_v1aPisum sativumpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g015760.1.five_prime_utr1Psat4g015760.1.five_prime_utr1_Ps_Cameor_v1aPisum sativumfive_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g015760.1.exon1Psat4g015760.1.exon1_Ps_Cameor_v1aPisum sativumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g015760.1.cds1Psat4g015760.1.cds1_Ps_Cameor_v1aPisum sativumCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g015760.1.three_prime_utr1Psat4g015760.1.three_prime_utr1_Ps_Cameor_v1aPisum sativumthree_prime_UTR


Homology
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BLAST of Psat4g015760.1 vs. DB:Swiss
Match: A70_ARATH (Pathogen-associated molecular patterns-induced protein A70 OS=Arabidopsis thaliana OX=3702 GN=A70 PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 4.647e-10
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:  583 RRRPSTAMARSETTTCKEDEGVDAKADDFINMFKKQLRLQRLNSFVRYRNTL 738
            RRRP T      T+    ++GVDAKA DFIN FK+QL+LQRL+S +RY+  L
Sbjct:  325 RRRPDTTRVERSTSFGDGEDGVDAKASDFINKFKQQLKLQRLDSILRYKEML 376
The following BLAST results are available for this feature:
BLAST of Psat4g015760.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
A70_ARATH4.647e-1053.85Pathogen-associated molecular patterns-induced pro... [more]
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InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008480Protein of unknown function DUF761, plantPFAMPF05553DUF761coord: 213..246
e-value: 4.6E-13
score: 48.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 191..213
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..166
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..213

Sequences
The following sequences are available for this feature:

mRNA sequence

>Psat4g015760.1_Ps_Cameor_v1a ID=Psat4g015760.1_Ps_Cameor_v1a; Name=Psat4g015760.1; organism=Pisum sativum; type=mRNA; length=1666bp
TCAAATAATTCCACAAGTCAAAGATCAAATTCCTATCACATTTCAATATA
ATTATACAATCATCAAGGAAGTTGTACAAAACAAGAAAACCCAACTTGTC
GGTATAATGCTATCGGGATATTTAGACCTTTGTTTTTGGATTCAAATATT
TCTGTTTCACTTGGATATTATTCCAAAGTTTTTTTGAGTAGAATTGATAA
TTTGATATTATTGGCAAAAATAACAATACTAACATCATTATAAAATTTTG
ATTCAAGTGTTACGTCGACAGGCGAACAAAACGACAACCTGCCAAAAGAA
GTAAACGTCGACAAGACAACTGAACTACAGAACAAGTGGTTCATGAATCA
TGATATTTATCAACCGTTTATTTTTCTTTCCTAAAAATACCCCATCTTTC
TCTATATTACACCCTCCATTAAATTCTTTCATTTCCCTCACCAATCAACA
CACTACGCAGTAACCTTGTAAACCACAATATGACAGACTCCATAACTGGT
ACTAATTTCATAGCAATAGCAACCTGGTTTGCACCTTCACCCCTCTTCAT
CCTTGTAAACCTTGTCATCGGTACCATAGCTCTCGTTTCTTGCTTCAGTG
CTGCACTAGCAACCTGGTTTGCACCTTCACCCCTCTTCATCCTTGTAAAC
CTTGTCATCGGTACCATAGCTCTCGTTTCTTGCTTCAGTGCTGCACCCAA
AATCAAAATCATCCAACGAGCCAAGTCCTTTAATCCCCGTCACTACTACA
ACCACCAAGAACCAGCATCTAGTGTTACACAACCCGAGTCAGTATCCGAG
TCTACTCAATCCCTACTCGTTCAAACACCAACCCTGTTAAAGCAAGTCGT
ATCCTTCAATCTCTCCCTCCATAAACTTGCGCCAGTTAAAACACATTACC
TTCAACCCGATACCGAAAACTCGTCTGCGGGACTGGATCTAAAACCGATT
AGTGATTCGGGTGATGATAAGAACAAGGTGGAGTTGAAGAGATCGGTGAG
CGAGAAGGAGTGCTCGATGACGTTGGACTGGGAGGAGGAAGAGGATGAAG
AAACGTTGGAGAGAAGGAGGCCTTCGACGGCGATGGCGAGAAGTGAAACG
ACGACGTGTAAAGAAGATGAAGGGGTTGACGCAAAAGCTGATGATTTTAT
CAACATGTTTAAGAAGCAACTGAGGTTGCAGAGGCTTAATTCTTTTGTCC
GATACAGAAACACACTTACACTTCCATCCTTTGAATAGTGAACGTTGTTC
ATAGATAAGATGCAAAATAATATTCATGAAAGAAAAAGAATATTGTTATA
AAAAAGAACTATGATTTTATTTTATCAACATGTTTGATTTGGAAACTAGT
TTAGGAGAAATTTAATACAATATTATTTCACTATTAATAACTACGATATT
TTGTTCAAGTAGGCTTTGGTAGATTTTTTTAGGGATGTTACAAGGGAATT
TGAATATCCTGCCGGTAGATTTTTCATCACTTTTCAAAGTCACACATTAG
AACCCACTTTGGTTTCTTGTAGGAGCCAAGGTTTCTTGACCATAAAAAAA
AACCTAACCATCATTTTCATTGGCTCTGAAGAAAAATACAATCGAACATA
TGTCATTAAAGTTGATGGGAAATATTTAACTTATCATTAGAGCCAACGAT
TTAACCTCGGAATGAC
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protein sequence of Psat4g015760.1_Ps_Cameor_v1a

>Psat4g015760.1_Ps_Cameor_v1a ID=Psat4g015760.1_Ps_Cameor_v1a; Name=Psat4g015760.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=253bp
MTDSITGTNFIAIATWFAPSPLFILVNLVIGTIALVSCFSAALATWFAPS
PLFILVNLVIGTIALVSCFSAAPKIKIIQRAKSFNPRHYYNHQEPASSVT
QPESVSESTQSLLVQTPTLLKQVVSFNLSLHKLAPVKTHYLQPDTENSSA
GLDLKPISDSGDDKNKVELKRSVSEKECSMTLDWEEEEDEETLERRRPST
AMARSETTTCKEDEGVDAKADDFINMFKKQLRLQRLNSFVRYRNTLTLPS
FE*
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mRNA from alignment at chr4LG4:22079990..22081655+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Psat4g015760.1_Ps_Cameor_v1a ID=Psat4g015760.1_Ps_Cameor_v1a; Name=Psat4g015760.1; organism=Pisum sativum; type=mRNA; length=1666bp; location=Sequence derived from: chr4LG4:22079990..22081655+ (Pisum sativum
TCAAATAATTCCACAAGTCAAAGATCAAATTCCTATCACATTTCAATATA
ATTATACAATCATCAAGGAAGTTGTACAAAACAAGAAAACCCAACTTGTC
GGTATAATGCTATCGGGATATTTAGACCTTTGTTTTTGGATTCAAATATT
TCTGTTTCACTTGGATATTATTCCAAAGTTTTTTTGAGTAGAATTGATAA
TTTGATATTATTGGCAAAAATAACAATACTAACATCATTATAAAATTTTG
ATTCAAGTGTTACGTCGACAGGCGAACAAAACGACAACCTGCCAAAAGAA
GTAAACGTCGACAAGACAACTGAACTACAGAACAAGTGGTTCATGAATCA
TGATATTTATCAACCGTTTATTTTTCTTTCCTAAAAATACCCCATCTTTC
TCTATATTACACCCTCCATTAAATTCTTTCATTTCCCTCACCAATCAACA
CACTACGCAGTAACCTTGTAAACCACAATATGACAGACTCCATAACTGGT
ACTAATTTCATAGCAATAGCAACCTGGTTTGCACCTTCACCCCTCTTCAT
CCTTGTAAACCTTGTCATCGGTACCATAGCTCTCGTTTCTTGCTTCAGTG
CTGCACTAGCAACCTGGTTTGCACCTTCACCCCTCTTCATCCTTGTAAAC
CTTGTCATCGGTACCATAGCTCTCGTTTCTTGCTTCAGTGCTGCACCCAA
AATCAAAATCATCCAACGAGCCAAGTCCTTTAATCCCCGTCACTACTACA
ACCACCAAGAACCAGCATCTAGTGTTACACAACCCGAGTCAGTATCCGAG
TCTACTCAATCCCTACTCGTTCAAACACCAACCCTGTTAAAGCAAGTCGT
ATCCTTCAATCTCTCCCTCCATAAACTTGCGCCAGTTAAAACACATTACC
TTCAACCCGATACCGAAAACTCGTCTGCGGGACTGGATCTAAAACCGATT
AGTGATTCGGGTGATGATAAGAACAAGGTGGAGTTGAAGAGATCGGTGAG
CGAGAAGGAGTGCTCGATGACGTTGGACTGGGAGGAGGAAGAGGATGAAG
AAACGTTGGAGAGAAGGAGGCCTTCGACGGCGATGGCGAGAAGTGAAACG
ACGACGTGTAAAGAAGATGAAGGGGTTGACGCAAAAGCTGATGATTTTAT
CAACATGTTTAAGAAGCAACTGAGGTTGCAGAGGCTTAATTCTTTTGTCC
GATACAGAAACACACTTACACTTCCATCCTTTGAATAGTGAACGTTGTTC
ATAGATAAGATGCAAAATAATATTCATGAAAGAAAAAGAATATTGTTATA
AAAAAGAACTATGATTTTATTTTATCAACATGTTTGATTTGGAAACTAGT
TTAGGAGAAATTTAATACAATATTATTTCACTATTAATAACTACGATATT
TTGTTCAAGTAGGCTTTGGTAGATTTTTTTAGGGATGTTACAAGGGAATT
TGAATATCCTGCCGGTAGATTTTTCATCACTTTTCAAAGTCACACATTAG
AACCCACTTTGGTTTCTTGTAGGAGCCAAGGTTTCTTGACCATAAAAAAA
AACCTAACCATCATTTTCATTGGCTCTGAAGAAAAATACAATCGAACATA
TGTCATTAAAGTTGATGGGAAATATTTAACTTATCATTAGAGCCAACGAT
TTAACCTCGGAATGAC
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Coding sequence (CDS) from alignment at chr4LG4:22079990..22081655+

>Psat4g015760.1_Ps_Cameor_v1a ID=Psat4g015760.1_Ps_Cameor_v1a; Name=Psat4g015760.1; organism=Pisum sativum; type=CDS; length=1518bp; location=Sequence derived from: chr4LG4:22079990..22081655+ (Pisum sativum
ATGACAGACTCCATAACTGGTACTAATTTCATAGCAATAGCAACCTGGTT
TGCACCTTCACCCCTCTTCATCCTTGTAAACCTTGTCATCGGTACCATAG
CTCTCGTTTCTTGCTTCAGTGCTGCACTAGCAACCTGGTTTGCACCTTCA
CCCCTCTTCATCCTTGTAAACCTTGTCATCGGTACCATAGCTCTCGTTTC
TTGCTTCAGTGCTGCACCCAAAATCAAAATCATCCAACGAGCCAAGTCCT
TTAATCCCCGTCACTACTACAACCACCAAGAACCAGCATCTAGTGTTACA
CAACCCGAGTCAGTATCCGAGTCTACTCAATCCCTACTCGTTCAAACACC
AACCCTGTTAAAGCAAGTCGTATCCTTCAATCTCTCCCTCCATAAACTTG
CGCCAGTTAAAACACATTACCTTCAACCCGATACCGAAAACTCGTCTGCG
GGACTGGATCTAAAACCGATTAGTGATTCGGGTGATGATAAGAACAAGGT
GGAGTTGAAGAGATCGGTGAGCGAGAAGGAGTGCTCGATGACGTTGGACT
GGGAGGAGGAAGAGGATGAAGAAACGTTGGAGAGAAGGAGGCCTTCGACG
GCGATGGCGAGAAGTGAAACGACGACGTGTAAAGAAGATGAAGGGGTTGA
CGCAAAAGCTGATGATTTTATCAACATGTTTAAGAAGCAACTGAGGTTGC
AGAGGCTTAATTCTTTTGTCCGATACAGAAACACACTTACACTTCCATCC
TTTGAATAGATGACAGACTCCATAACTGGTACTAATTTCATAGCAATAGC
AACCTGGTTTGCACCTTCACCCCTCTTCATCCTTGTAAACCTTGTCATCG
GTACCATAGCTCTCGTTTCTTGCTTCAGTGCTGCACTAGCAACCTGGTTT
GCACCTTCACCCCTCTTCATCCTTGTAAACCTTGTCATCGGTACCATAGC
TCTCGTTTCTTGCTTCAGTGCTGCACCCAAAATCAAAATCATCCAACGAG
CCAAGTCCTTTAATCCCCGTCACTACTACAACCACCAAGAACCAGCATCT
AGTGTTACACAACCCGAGTCAGTATCCGAGTCTACTCAATCCCTACTCGT
TCAAACACCAACCCTGTTAAAGCAAGTCGTATCCTTCAATCTCTCCCTCC
ATAAACTTGCGCCAGTTAAAACACATTACCTTCAACCCGATACCGAAAAC
TCGTCTGCGGGACTGGATCTAAAACCGATTAGTGATTCGGGTGATGATAA
GAACAAGGTGGAGTTGAAGAGATCGGTGAGCGAGAAGGAGTGCTCGATGA
CGTTGGACTGGGAGGAGGAAGAGGATGAAGAAACGTTGGAGAGAAGGAGG
CCTTCGACGGCGATGGCGAGAAGTGAAACGACGACGTGTAAAGAAGATGA
AGGGGTTGACGCAAAAGCTGATGATTTTATCAACATGTTTAAGAAGCAAC
TGAGGTTGCAGAGGCTTAATTCTTTTGTCCGATACAGAAACACACTTACA
CTTCCATCCTTTGAATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR008480DUF761_pln