Psat6g005440.1

Transcript Overview
NamePsat6g005440.1
Unique NamePsat6g005440.1_Ps_Cameor_v1a
TypemRNA
OrganismPisum sativum (pea)
Sequence length2236
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr6LG2supercontigchr6LG2:3748932..3751167 -Pisum sativum Cameor genome v1an/a
chr6LG2supercontigchr6LG2:3748932..3751167 -Pisum sativum Cameor genome v1an/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan: P. sativum Cameor genome v1a2019-09-12
BLAST: P. sativum Cameor genome v1a vs. Swissprot2019-09-12
Pisum sativum Cameor genome v1a2019-09-06
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
crpsL366Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
caipsL401Cicer arietinum ICC 4958 genome v2Cicer arietinum
capsL340Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpsL806Cajanus cajan Asha genome v1.0Cajanus cajan
anpsL0097Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspsL232Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspsL764Vigna angularis Jingnong 6 genome v1.1Vigna angularis
canpsL343Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpsL597Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpsL764Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpsL320Cicer arietinum
ccapsL546Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapsL663Cajanus cajan cv. Asha genome v2.0Cajanus cajan

Orthologs
Gene/TranscriptAssemblySpecies
Va04G069550.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
LR48_mrnaVigan09g028900Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Ca_08665.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Va07G070660.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Cc_v2.0_10951.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Ca_10766Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
LR48_mrnaVigan07g282200Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-XM_004499156.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Cc_v2.0_15166.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Cr_07761.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-KK1_031803Cajanus cajan Asha genome v1.0Cajanus cajan
rna-TanjilR_31033Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Psat6g005440Psat6g005440_Ps_Cameor_v1aPisum sativumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Psat6g005440.1Psat6g005440.1_Ps_Cameor_v1a-proteinPisum sativumpolypeptide
Psat6g005440.1_Ps_Cameor_v1aPsat6g005440.1_Ps_Cameor_v1aPisum sativumpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat6g005440.1.five_prime_utr1Psat6g005440.1.five_prime_utr1_Ps_Cameor_v1aPisum sativumfive_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat6g005440.1.exon1Psat6g005440.1.exon1_Ps_Cameor_v1aPisum sativumexon
Psat6g005440.1.exon2Psat6g005440.1.exon2_Ps_Cameor_v1aPisum sativumexon
Psat6g005440.1.exon3Psat6g005440.1.exon3_Ps_Cameor_v1aPisum sativumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat6g005440.1.cds1Psat6g005440.1.cds1_Ps_Cameor_v1aPisum sativumCDS
Psat6g005440.1.cds2Psat6g005440.1.cds2_Ps_Cameor_v1aPisum sativumCDS
Psat6g005440.1.cds3Psat6g005440.1.cds3_Ps_Cameor_v1aPisum sativumCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat6g005440.1.three_prime_utr1Psat6g005440.1.three_prime_utr1_Ps_Cameor_v1aPisum sativumthree_prime_UTR


Homology
[Close]
BLAST of Psat6g005440.1 vs. DB:Swiss
Match: BBX21_ARATH (B-box zinc finger protein 21 OS=Arabidopsis thaliana OX=3702 GN=BBX21 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 3.966e-65
Identity = 143/332 (43.07%), Postives = 189/332 (56.93%), Query Frame = 1 
Query:    1 MKIQCDVCNKNEASLFCTADEAALCNDCDHRVHHANKLASKHHRLSLHSPSPKQ--HPLCDICQERRAFVLCKQDRALLCKDCDSSIHSVNELTQKHDRFLLTGVKLXXXXXXXXXXXXXXXXXXXXXXL-VPSSLIEKS-------STISQTSTLK-----NVAMXXXXXXXXXXXISKYLIETLPGWQVDDFLDSSSVPFSFAK-GDE-----LFEENLDS-----------------FFPNSNIGIWVPQAP-------PPSLYSSSQIMMMG--QSETXXXXXXXXXI--------NRSRLRDDGNIFTVPQISPG--SNSKRTRYLW 825
            MKI+CDVC+K EAS+FCTADEA+LC  CDH+VHHANKLASKH R SL  PS      PLCDICQ+++A + C+QDRA+LCKDCDSSIH+ NE T+KHDRFLLTGVKLS TS+    +S ++++++S  +  VP S I          S   Q++ ++     N       +    S+IS+YL++TLPGW V+DFLDSS   + F+K GD+       E   D+                   P+ N+GIWVPQ P       P   +S    +  G    ET     + + I        N  R  DDG  FTVPQI+P   S++K+ R  W
Sbjct:    1 MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKSSSSSSSNQDFSVPGSSISNPPPLKKPLSAPPQSNKIQPFSKINGGDASVNQWGSTSTISEYLMDTLPGWHVEDFLDSSLPTYGFSKSGDDDGVLPYMEPEDDNNTKRNNNNNNNNNNNTVSLPSKNLGIWVPQIPQTLPSSYPNQYFSQDNNIQFGMYNKETSPEVVSFAPIQNMKQQGQNNKRWYDDGG-FTVPQITPPPLSSNKKFRSFW 331
[Close]
BLAST of Psat6g005440.1 vs. DB:Swiss
Match: BBX20_ARATH (B-box zinc finger protein 20 OS=Arabidopsis thaliana OX=3702 GN=BBX20 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 5.730e-45
Identity = 100/203 (49.26%), Postives = 127/203 (62.56%), Query Frame = 1 
Query:    1 MKIQCDVCNKNEASLFCTADEAALCNDCDHRVHHANKLASKHHRLSLHSPSPKQHPLCDICQERRAFVLCKQDRALLCKDCDSSIHSVNELTQKHDRFLLTGVKLXXXXXXXXXXXXXXXXXX---------XXXXLVPSSLIEKSSTISQTSTLKNVAMXXXXXX----------XXXXXISKYLIETLPGWQVDDFLDSSS 552
            MKI C VC+K EAS+FC ADEAALCN CD  VH ANKLA KH R SL SP+ K  PLCDIC ERRA + C++DRA+LC++CD  IH  NE T+KH+RFLLTGVK+S + +  P +S++ +            S S+ VPSS   +  T S ++T  N     EE                SIS+YL+ETLPGW+V+D L+  S
Sbjct:    1 MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDICGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSAYPRASNSNSAAAFGRAKTRPKSVSSEVPSSASNEVFTSSSSTTTSNCYYGIEENYHHVSDSGSGSGCTGSISEYLMETLPGWRVEDLLEHPS 203
[Close]
BLAST of Psat6g005440.1 vs. DB:Swiss
Match: BBX24_ARATH (B-box zinc finger protein 24 OS=Arabidopsis thaliana OX=3702 GN=BBX24 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.603e-36
Identity = 65/105 (61.90%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:    1 MKIQCDVCNKNEASLFCTADEAALCNDCDHRVHHANKLASKHHRLSLHSPSPKQHPLCDICQERRAFVLCKQDRALLCKDCDSSIHSVNELTQKHDRFLLTGVKL 315
            MKIQCDVC K  A++ C ADEAALC  CD  +H ANKLASKH RL L+S S K  P CDICQE+ AF+ C +DRALLC+DCD SIH  N  +  H RFL TG+K+
Sbjct:    1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTK-FPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKV 104
[Close]
BLAST of Psat6g005440.1 vs. DB:Swiss
Match: BBX22_ARATH (B-box zinc finger protein 22 OS=Arabidopsis thaliana OX=3702 GN=BBX22 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.418e-34
Identity = 61/105 (58.10%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:    1 MKIQCDVCNKNEASLFCTADEAALCNDCDHRVHHANKLASKHHRLSLHSPSPKQHPLCDICQERRAFVLCKQDRALLCKDCDSSIHSVNELTQKHDRFLLTGVKL 315
            MKIQC+VC   EA++ C ADEAALC  CD ++H ANKLA KH R+ L S S    P CDICQE   F  C QDRALLC+ CD +IH+VN     H RFLLTG+K+
Sbjct:    1 MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPL-SASASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKV 104
[Close]
BLAST of Psat6g005440.1 vs. DB:Swiss
Match: BBX25_ARATH (B-box zinc finger protein 25 OS=Arabidopsis thaliana OX=3702 GN=BBX25 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 4.077e-34
Identity = 63/105 (60.00%), Postives = 74/105 (70.48%), Query Frame = 1 
Query:    1 MKIQCDVCNKNEASLFCTADEAALCNDCDHRVHHANKLASKHHRLSLHSPSPKQHPLCDICQERRAFVLCKQDRALLCKDCDSSIHSVNELTQKHDRFLLTGVKL 315
            MKIQCDVC K  A+L C ADEAALC  CD  VH ANKLASKH RL L S S K  P CDIC E+ AF+ C +DRALLC+DCD + H+ N  +  H RFL TG+++
Sbjct:    1 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTK-FPPCDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRV 104
[Close]
BLAST of Psat6g005440.1 vs. DB:Swiss
Match: BBX23_ARATH (B-box zinc finger protein 23 OS=Arabidopsis thaliana OX=3702 GN=BBX23 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.845e-32
Identity = 56/110 (50.91%), Postives = 74/110 (67.27%), Query Frame = 1 
Query:    1 MKIQCDVCNKNEASLFCTADEAALCNDCDHRVHHANKLASKHHRLSLH-----SPSPKQHPLCDICQERRAFVLCKQDRALLCKDCDSSIHSVNELTQKHDRFLLTGVKL 315
            MKIQC+VC K EA + C +DEA LC  CD +VH ANKL  +HHR++L      + +    PLCDICQER+ +  C +DRA+LC DCD +IH+ N     H RFLL+GV++
Sbjct:    1 MKIQCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEANKLFQRHHRVALQKDAASATTASGAPLCDICQERKGYFFCLEDRAMLCNDCDEAIHTCN----SHQRFLLSGVQV 106
[Close]
BLAST of Psat6g005440.1 vs. DB:Swiss
Match: BBX19_ARATH (B-box zinc finger protein 19 OS=Arabidopsis thaliana OX=3702 GN=BBX19 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.265e-21
Identity = 49/100 (49.00%), Postives = 59/100 (59.00%), Query Frame = 1 
Query:    1 MKIQCDVCNKNEASLFCTADEAALCNDCDHRVHHANKLASKHHRLSLHSPSPKQHPLCDICQERRAFVLCKQDRALLCKDCDSSIHSVNELTQKHDRFLL 300
            M+I CD C    A +FC ADEAALC  CD +VH  NKLAS+H R+ L  PS    P CDIC+   AF  C+ D + LC  CD  +H   + T  H RFLL
Sbjct:    1 MRILCDACENAAAIIFCAADEAALCRPCDEKVHMCNKLASRHVRVGLAEPS--NAPCCDICENAPAFFYCEIDGSSLCLQCDMVVHVGGKRT--HGRFLL 96
[Close]
BLAST of Psat6g005440.1 vs. DB:Swiss
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.636e-21
Identity = 45/97 (46.39%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:   13 CDVCNKNEASLFCTADEAALCNDCDHRVHHANKLASKHHRLSLHSPSPKQHPLCDICQERRAFVLCKQDRALLCKDCDSSIHSVNELTQKHDRFLLT 303
            CD C    A+LFC AD A LC DCD ++H ANKLAS+H R+           LC++C++  A V CK D A LC  CD  IHS N L+++H+R  +T
Sbjct:    8 CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVW----------LCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPIT 94
[Close]
BLAST of Psat6g005440.1 vs. DB:Swiss
Match: BBX18_ARATH (B-box zinc finger protein 18 OS=Arabidopsis thaliana OX=3702 GN=BBX18 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.549e-20
Identity = 49/100 (49.00%), Postives = 59/100 (59.00%), Query Frame = 1 
Query:    1 MKIQCDVCNKNEASLFCTADEAALCNDCDHRVHHANKLASKHHRLSLHSPSPKQHPLCDICQERRAFVLCKQDRALLCKDCDSSIHSVNELTQKHDRFLL 300
            M+I CD C    A +FC ADEAALC  CD +VH  NKLAS+H R+ L  PS    P CDIC+   AF  C+ D + LC  CD  +H   + T  H RFLL
Sbjct:    1 MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNA--PSCDICENAPAFFYCEIDGSSLCLQCDMVVHVGGKRT--HRRFLL 96
[Close]
BLAST of Psat6g005440.1 vs. DB:Swiss
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 2.177e-18
Identity = 42/97 (43.30%), Postives = 56/97 (57.73%), Query Frame = 1 
Query:   13 CDVCNKNEASLFCTADEAALCNDCDHRVHHANKLASKHHRLSLHSPSPKQHPLCDICQERRAFVLCKQDRALLCKDCDSSIHSVNELTQKHDRFLLT 303
            CD C    A+L+C  D A LC  CD +VH ANKLAS+H R+           +C++C++  A V CK D A LC  CD  IHS N L ++H+R  +T
Sbjct:    6 CDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVW----------MCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVT 92
The following BLAST results are available for this feature:
BLAST of Psat6g005440.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
BBX21_ARATH3.966e-6543.07B-box zinc finger protein 21 OS=Arabidopsis thalia... [more]
BBX20_ARATH5.730e-4549.26B-box zinc finger protein 20 OS=Arabidopsis thalia... [more]
BBX24_ARATH2.603e-3661.90B-box zinc finger protein 24 OS=Arabidopsis thalia... [more]
BBX22_ARATH2.418e-3458.10B-box zinc finger protein 22 OS=Arabidopsis thalia... [more]
BBX25_ARATH4.077e-3460.00B-box zinc finger protein 25 OS=Arabidopsis thalia... [more]
BBX23_ARATH4.845e-3250.91B-box zinc finger protein 23 OS=Arabidopsis thalia... [more]
BBX19_ARATH1.265e-2149.00B-box zinc finger protein 19 OS=Arabidopsis thalia... [more]
COL3_ARATH1.636e-2146.39Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
BBX18_ARATH6.549e-2049.00B-box zinc finger protein 18 OS=Arabidopsis thalia... [more]
COL4_ARATH2.177e-1843.30Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
back to top
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000315B-box-type zinc fingerSMARTSM00336bboxneu5coord: 4..47
e-value: 9.1E-6
score: 35.2
coord: 53..100
e-value: 3.3E-13
score: 59.9
IPR000315B-box-type zinc fingerPFAMPF00643zf-B_boxcoord: 4..44
e-value: 5.1E-6
score: 26.5
coord: 54..96
e-value: 5.0E-6
score: 26.6
IPR000315B-box-type zinc fingerPROSITEPS50119ZF_BBOXcoord: 1..47
score: 11.064
IPR000315B-box-type zinc fingerPROSITEPS50119ZF_BBOXcoord: 53..100
score: 9.968
IPR000315B-box-type zinc fingerCDDcd00021BBOXcoord: 56..100
e-value: 2.81872E-9
score: 49.5931
IPR000315B-box-type zinc fingerCDDcd00021BBOXcoord: 3..47
e-value: 3.69144E-8
score: 46.5115
NoneNo IPR availableGENE3D3.30.40.200coord: 1..95
e-value: 5.2E-8
score: 35.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..128
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 255..275
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 259..275

Sequences
The following sequences are available for this feature:

mRNA sequence

>Psat6g005440.1_Ps_Cameor_v1a ID=Psat6g005440.1_Ps_Cameor_v1a; Name=Psat6g005440.1; organism=Pisum sativum; type=mRNA; length=2236bp
ATTTTAGCATATCTTTGATTCTCGCATCCATGATTAAATCTATATTTTAT
TTATCAAGAAAGCAACAACACTGGTCCCCTTCTTTTTCAATATCTTTTTT
AATATGAACTCACAATTTCTCATATATATATTATAATGCCTAAGCGATAA
TGGTGGGTTACCTATTTTTATTTCTTCACATAAACTACTCCCTCGTTGAT
CATGGAGCCATCTTTTCCATTAAATAATTTCTTCATTTCTTCATTTATCT
AACTCAATCATTTCCATTTTCTCAAACCAAAAAAAAATGAAGATCCAGTG
CGACGTTTGCAACAAAAACGAAGCTTCATTATTCTGCACCGCCGATGAAG
CCGCCTTATGCAACGACTGCGACCACCGTGTCCACCACGCCAACAAACTA
GCCTCCAAACACCACCGTCTCTCTCTTCACAGTCCTTCTCCTAAACAACA
CCCTCTCTGTGATATCTGCCAGGTAATATATATATAATGAAATAAACCTC
TCTTATCTTTCAACATCAAAATCGATTTTCATGTGTTGACTTTTTATTCT
TGTTTCAGGAGAGAAGAGCTTTTGTGTTGTGTAAACAAGATAGAGCGCTT
CTGTGTAAAGATTGTGATTCATCTATTCATTCTGTTAACGAACTTACTCA
GAAACATGATAGGTTTCTTCTCACTGGTGTTAAGCTTTCAACTACTAGTA
CTAACTCTCCATCTTCGTCATCAACAACAACAACTACTAATTCTAAGTCG
AATCTTGTTCCTTCTTCTTTGATTGAAAAATCAAGTACTATATCACAAAC
TTCAACTCTCAAAAACGTAGCCATGGAAGAAGAAGAAGAAGGAAGTGGTG
GTTCAAGTATTTCTAAGTACTTGATTGAGACTCTACCTGGTTGGCAAGTT
GATGATTTTCTAGATTCTTCTTCTGTTCCCTTTTCTTTCGCTAAGGTTTT
TATATTTTCTTTCTCTCACTCTAAGTTAATCTATTGCTATCAAATTTTGT
GTTTATTTATTAATTACTAGATCAGATCAAGATATTCTAACAAATTTTAA
TTCAATTTTGATTTTTTATTCACTTCAATAGAATTTGATTTTACAAAAAT
ATTCTAGTCAAATGCAACTAATAACAGTCTCAACTGCTTGTCAACAGACT
AACTTTTGAGATTATAGCGGTTGAGGACTATGTTTTGAGATCGTATCAGT
TGCATTTGACTGTGATGAATGATCGGTTCATACGGCATCAACCGCTATAT
GACCGATCTTTCATCACGGTCAAATGCATCTGATACATCTCAAAACATAG
TTGAGGACTATTTTTTGAGGTTGAATCGGTTGAGTTTGACCGCGACGAAA
GATACTAAGATTAGAAATAATTGATTGGTTTGTTTAAGATTTGGATCTGG
TTATATGAAATGCAGGGTGATGAATTGTTTGAAGAAAATCTTGATTCATT
TTTTCCTAATAGTAATATTGGGATCTGGGTTCCTCAAGCACCACCACCTT
CTCTATATTCTTCTTCACAGATAATGATGATGGGTCAGAGTGAGACCAAG
AAAAACAGCAACAACAAAAGCAGCATCAACAGATCAAGGTTGAGGGATGA
TGGTAACATTTTCACAGTTCCACAGATTAGTCCTGGTTCCAATTCCAAGA
GAACAAGATATCTATGGTAGATCTAGATTTCTGTGTGGATAGTTGTTAAA
GCTTATGCATCTAAAAAAAATAAACAAAATAACACCCTCTTTGTTTGTAT
GTTTTTTATTTTGGGTTCATTTAATCTTCTCTCTCTTTTCAGCTACTATG
TGGTTTGAGGTTGAGTTTCACTTTTTGGATCTGTTTGACTTTTTTTTTCT
ACTTCTTTTTGTGTCTTTTTTGAGGAATAACTTTGCTACCCTCAATGTAA
ATGTAAATGCTTTCACTTCTATCAGCTTTTTCAAATGCATGTTGCTATTT
TTGTACATGTTAAGGAAAGTTAAACAGTATATAGATTTCCAGTGTTTTTT
TTCTTCTCAATCGACAAGCAAAAGAACCTCATTCCTTTCCTTGTTGAGGC
TTTTAAATTGCAGCTAGTGTTAACAGTTAGAAAATGATTCTTTTTATGTC
TGCAAAATTTTCCAAATTAATACAACTTACACAGCTCCCAAAAGTATAGC
ACAATAATATGAGTTGCGTTAGAGCACCAATAGTAACAACGAGAAAATAG
AAAGGCAAATGGTAAATATTGAACACGACAATTGTT
back to top

protein sequence of Psat6g005440.1_Ps_Cameor_v1a

>Psat6g005440.1_Ps_Cameor_v1a ID=Psat6g005440.1_Ps_Cameor_v1a; Name=Psat6g005440.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=276bp
MKIQCDVCNKNEASLFCTADEAALCNDCDHRVHHANKLASKHHRLSLHSP
SPKQHPLCDICQERRAFVLCKQDRALLCKDCDSSIHSVNELTQKHDRFLL
TGVKLSTTSTNSPSSSSTTTTTNSKSNLVPSSLIEKSSTISQTSTLKNVA
MEEEEEGSGGSSISKYLIETLPGWQVDDFLDSSSVPFSFAKGDELFEENL
DSFFPNSNIGIWVPQAPPPSLYSSSQIMMMGQSETKKNSNNKSSINRSRL
RDDGNIFTVPQISPGSNSKRTRYLW*
back to top

mRNA from alignment at chr6LG2:3748932..3751167-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Psat6g005440.1_Ps_Cameor_v1a ID=Psat6g005440.1_Ps_Cameor_v1a; Name=Psat6g005440.1; organism=Pisum sativum; type=mRNA; length=2236bp; location=Sequence derived from: chr6LG2:3748932..3751167- (Pisum sativum
ATTTTAGCATATCTTTGATTCTCGCATCCATGATTAAATCTATATTTTAT
TTATCAAGAAAGCAACAACACTGGTCCCCTTCTTTTTCAATATCTTTTTT
AATATGAACTCACAATTTCTCATATATATATTATAATGCCTAAGCGATAA
TGGTGGGTTACCTATTTTTATTTCTTCACATAAACTACTCCCTCGTTGAT
CATGGAGCCATCTTTTCCATTAAATAATTTCTTCATTTCTTCATTTATCT
AACTCAATCATTTCCATTTTCTCAAACCAAAAAAAAATGAAGATCCAGTG
CGACGTTTGCAACAAAAACGAAGCTTCATTATTCTGCACCGCCGATGAAG
CCGCCTTATGCAACGACTGCGACCACCGTGTCCACCACGCCAACAAACTA
GCCTCCAAACACCACCGTCTCTCTCTTCACAGTCCTTCTCCTAAACAACA
CCCTCTCTGTGATATCTGCCAGGTAATATATATATAATGAAATAAACCTC
TCTTATCTTTCAACATCAAAATCGATTTTCATGTGTTGACTTTTTATTCT
TGTTTCAGGAGAGAAGAGCTTTTGTGTTGTGTAAACAAGATAGAGCGCTT
CTGTGTAAAGATTGTGATTCATCTATTCATTCTGTTAACGAACTTACTCA
GAAACATGATAGGTTTCTTCTCACTGGTGTTAAGCTTTCAACTACTAGTA
CTAACTCTCCATCTTCGTCATCAACAACAACAACTACTAATTCTAAGTCG
AATCTTGTTCCTTCTTCTTTGATTGAAAAATCAAGTACTATATCACAAAC
TTCAACTCTCAAAAACGTAGCCATGGAAGAAGAAGAAGAAGGAAGTGGTG
GTTCAAGTATTTCTAAGTACTTGATTGAGACTCTACCTGGTTGGCAAGTT
GATGATTTTCTAGATTCTTCTTCTGTTCCCTTTTCTTTCGCTAAGGTTTT
TATATTTTCTTTCTCTCACTCTAAGTTAATCTATTGCTATCAAATTTTGT
GTTTATTTATTAATTACTAGATCAGATCAAGATATTCTAACAAATTTTAA
TTCAATTTTGATTTTTTATTCACTTCAATAGAATTTGATTTTACAAAAAT
ATTCTAGTCAAATGCAACTAATAACAGTCTCAACTGCTTGTCAACAGACT
AACTTTTGAGATTATAGCGGTTGAGGACTATGTTTTGAGATCGTATCAGT
TGCATTTGACTGTGATGAATGATCGGTTCATACGGCATCAACCGCTATAT
GACCGATCTTTCATCACGGTCAAATGCATCTGATACATCTCAAAACATAG
TTGAGGACTATTTTTTGAGGTTGAATCGGTTGAGTTTGACCGCGACGAAA
GATACTAAGATTAGAAATAATTGATTGGTTTGTTTAAGATTTGGATCTGG
TTATATGAAATGCAGGGTGATGAATTGTTTGAAGAAAATCTTGATTCATT
TTTTCCTAATAGTAATATTGGGATCTGGGTTCCTCAAGCACCACCACCTT
CTCTATATTCTTCTTCACAGATAATGATGATGGGTCAGAGTGAGACCAAG
AAAAACAGCAACAACAAAAGCAGCATCAACAGATCAAGGTTGAGGGATGA
TGGTAACATTTTCACAGTTCCACAGATTAGTCCTGGTTCCAATTCCAAGA
GAACAAGATATCTATGGTAGATCTAGATTTCTGTGTGGATAGTTGTTAAA
GCTTATGCATCTAAAAAAAATAAACAAAATAACACCCTCTTTGTTTGTAT
GTTTTTTATTTTGGGTTCATTTAATCTTCTCTCTCTTTTCAGCTACTATG
TGGTTTGAGGTTGAGTTTCACTTTTTGGATCTGTTTGACTTTTTTTTTCT
ACTTCTTTTTGTGTCTTTTTTGAGGAATAACTTTGCTACCCTCAATGTAA
ATGTAAATGCTTTCACTTCTATCAGCTTTTTCAAATGCATGTTGCTATTT
TTGTACATGTTAAGGAAAGTTAAACAGTATATAGATTTCCAGTGTTTTTT
TTCTTCTCAATCGACAAGCAAAAGAACCTCATTCCTTTCCTTGTTGAGGC
TTTTAAATTGCAGCTAGTGTTAACAGTTAGAAAATGATTCTTTTTATGTC
TGCAAAATTTTCCAAATTAATACAACTTACACAGCTCCCAAAAGTATAGC
ACAATAATATGAGTTGCGTTAGAGCACCAATAGTAACAACGAGAAAATAG
AAAGGCAAATGGTAAATATTGAACACGACAATTGTT
back to top

Coding sequence (CDS) from alignment at chr6LG2:3748932..3751167-

>Psat6g005440.1_Ps_Cameor_v1a ID=Psat6g005440.1_Ps_Cameor_v1a; Name=Psat6g005440.1; organism=Pisum sativum; type=CDS; length=1656bp; location=Sequence derived from: chr6LG2:3748932..3751167- (Pisum sativum
ATGAAGATCCAGTGCGACGTTTGCAACAAAAACGAAGCTTCATTATTCTG
CACCGCCGATGAAGCCGCCTTATGCAACGACTGCGACCACCGTGTCCACC
ACGCCAACAAACTAGCCTCCAAACACCACCGTCTCTCTCTTCACAGTCCT
TCTCCTAAACAACACCCTCTCTGTGATATCTGCCAGATGAAGATCCAGTG
CGACGTTTGCAACAAAAACGAAGCTTCATTATTCTGCACCGCCGATGAAG
CCGCCTTATGCAACGACTGCGACCACCGTGTCCACCACGCCAACAAACTA
GCCTCCAAACACCACCGTCTCTCTCTTCACAGTCCTTCTCCTAAACAACA
CCCTCTCTGTGATATCTGCCAGGAGAGAAGAGCTTTTGTGTTGTGTAAAC
AAGATAGAGCGCTTCTGTGTAAAGATTGTGATTCATCTATTCATTCTGTT
AACGAACTTACTCAGAAACATGATAGGTTTCTTCTCACTGGTGTTAAGCT
TTCAACTACTAGTACTAACTCTCCATCTTCGTCATCAACAACAACAACTA
CTAATTCTAAGTCGAATCTTGTTCCTTCTTCTTTGATTGAAAAATCAAGT
ACTATATCACAAACTTCAACTCTCAAAAACGTAGCCATGGAAGAAGAAGA
AGAAGGAAGTGGTGGTTCAAGTATTTCTAAGTACTTGATTGAGACTCTAC
CTGGTTGGCAAGTTGATGATTTTCTAGATTCTTCTTCTGTTCCCTTTTCT
TTCGCTAAGGAGAGAAGAGCTTTTGTGTTGTGTAAACAAGATAGAGCGCT
TCTGTGTAAAGATTGTGATTCATCTATTCATTCTGTTAACGAACTTACTC
AGAAACATGATAGGTTTCTTCTCACTGGTGTTAAGCTTTCAACTACTAGT
ACTAACTCTCCATCTTCGTCATCAACAACAACAACTACTAATTCTAAGTC
GAATCTTGTTCCTTCTTCTTTGATTGAAAAATCAAGTACTATATCACAAA
CTTCAACTCTCAAAAACGTAGCCATGGAAGAAGAAGAAGAAGGAAGTGGT
GGTTCAAGTATTTCTAAGTACTTGATTGAGACTCTACCTGGTTGGCAAGT
TGATGATTTTCTAGATTCTTCTTCTGTTCCCTTTTCTTTCGCTAAGGGTG
ATGAATTGTTTGAAGAAAATCTTGATTCATTTTTTCCTAATAGTAATATT
GGGATCTGGGTTCCTCAAGCACCACCACCTTCTCTATATTCTTCTTCACA
GATAATGATGATGGGTCAGAGTGAGACCAAGAAAAACAGCAACAACAAAA
GCAGCATCAACAGATCAAGGTTGAGGGATGATGGTAACATTTTCACAGTT
CCACAGATTAGTCCTGGTTCCAATTCCAAGAGAACAAGATATCTATGGTA
GGGTGATGAATTGTTTGAAGAAAATCTTGATTCATTTTTTCCTAATAGTA
ATATTGGGATCTGGGTTCCTCAAGCACCACCACCTTCTCTATATTCTTCT
TCACAGATAATGATGATGGGTCAGAGTGAGACCAAGAAAAACAGCAACAA
CAAAAGCAGCATCAACAGATCAAGGTTGAGGGATGATGGTAACATTTTCA
CAGTTCCACAGATTAGTCCTGGTTCCAATTCCAAGAGAACAAGATATCTA
TGGTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000315Znf_B-box
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding