Psat6g006200.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Psat6g006200.1 vs. DB:Swiss
Match: DRE2D_ARATH (Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana OX=3702 GN=DREB2D PE=2 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 4.939e-41 Identity = 81/103 (78.64%), Postives = 87/103 (84.47%), Query Frame = 1 Query: 31 KKQLKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEXXXXXXXXXRKLYGSEAKLNLPD--LSTPSAPSATISQT 333
KKQ + QASSRKGCMRGKGGP+NASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTF+TS EAALAYD+AARKLYG EA LNLP+ S P S+ SQT
Sbjct: 15 KKQ--RTVQASSRKGCMRGKGGPDNASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSREAALAYDSAARKLYGPEAHLNLPESLRSYPKTASSPASQT 115
BLAST of Psat6g006200.1 vs. DB:Swiss
Match: DRE2G_ARATH (Dehydration-responsive element-binding protein 2G OS=Arabidopsis thaliana OX=3702 GN=DREB2G PE=1 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.787e-34 Identity = 67/87 (77.01%), Postives = 74/87 (85.06%), Query Frame = 1 Query: 25 EEKKQLKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEXXXXXXXXXRKLYGSEAKLNL 285
EE+ KK SRKGCM+GKGGPENA+CT++GVRQRTWGKWVAEIREPNRG RLWLGTF TS EAA+AYD AA+KLYG EAKLNL
Sbjct: 3 EEQPPAKKRNMGRSRKGCMKGKGGPENATCTFRGVRQRTWGKWVAEIREPNRGTRLWLGTFNTSVEAAMAYDEAAKKLYGHEAKLNL 89
BLAST of Psat6g006200.1 vs. DB:Swiss
Match: DRE2C_ARATH (Dehydration-responsive element-binding protein 2C OS=Arabidopsis thaliana OX=3702 GN=DREB2C PE=2 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 3.362e-33 Identity = 65/101 (64.36%), Postives = 81/101 (80.20%), Query Frame = 1 Query: 34 KQLKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEXXXXXXXXXRKLYGSEAKLNLPDL---STPSAPSATIS 327
K ++KP SRKGCM+GKGGPEN C Y+GVRQR WGKWVAEIREP+ GARLWLGTF +S+EAALAYD AA+ +YG A+LNLP++ S+ +A +AT+S
Sbjct: 44 KSIRKPPPKGSRKGCMKGKGGPENGICDYRGVRQRRWGKWVAEIREPDGGARLWLGTFSSSYEAALAYDEAAKAIYGQSARLNLPEITNRSSSTAATATVS 144
BLAST of Psat6g006200.1 vs. DB:Swiss
Match: DRE2H_ARATH (Putative dehydration-responsive element-binding protein 2H OS=Arabidopsis thaliana OX=3702 GN=DREB2H PE=5 SV=3) HSP 1 Score: 121.709 bits (304), Expect = 4.547e-33 Identity = 65/111 (58.56%), Postives = 78/111 (70.27%), Query Frame = 1 Query: 34 KQLKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEXXXXXXXXXRKLYGSEAKLNLPDLSTPSAPSATISQTPEMQHQQIQIQ 366
K ++K SRKGCM+GKGGPEN C Y GVRQRTWGKWVAEIREP RGA+LWLGTF +S+EAALAYD A++ +YG A+LNLP L A + H +IQ+Q
Sbjct: 39 KPIRKAPPKRSRKGCMKGKGGPENGICDYTGVRQRTWGKWVAEIREPGRGAKLWLGTFSSSYEAALAYDEASKAIYGQSARLNLPLLPLCQARLLHFLMNLKFVHVRIQMQ 149
BLAST of Psat6g006200.1 vs. DB:Swiss
Match: DRE2A_ORYSJ (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. japonica OX=39947 GN=DREB2A PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 1.630e-31 Identity = 68/110 (61.82%), Postives = 79/110 (71.82%), Query Frame = 1 Query: 25 EEKKQLKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEXXXXXXXXXRKLYGSEAKLNLPDLST------PSAPSATISQTP 336
EE K PA+ S +KGCM GKGGPEN++C Y+GVRQRTWGKWVAEIREPNRG RLWLG+F T+ EAA AYD AAR +YG A++N D ST SAPS +S P
Sbjct: 46 EENSSRKAPAKGS-KKGCMAGKGGPENSNCAYRGVRQRTWGKWVAEIREPNRGRRLWLGSFPTALEAAHAYDEAARAMYGPTARVNFADNSTDANSGCTSAPSLMMSNGP 154
BLAST of Psat6g006200.1 vs. DB:Swiss
Match: DRE2A_ORYSI (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. indica OX=39946 GN=DREB2A PE=3 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 1.736e-31 Identity = 68/110 (61.82%), Postives = 79/110 (71.82%), Query Frame = 1 Query: 25 EEKKQLKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEXXXXXXXXXRKLYGSEAKLNLPDLST------PSAPSATISQTP 336
EE K PA+ S +KGCM GKGGPEN++C Y+GVRQRTWGKWVAEIREPNRG RLWLG+F T+ EAA AYD AAR +YG A++N D ST SAPS +S P
Sbjct: 46 EENSSRKAPAKGS-KKGCMAGKGGPENSNCAYRGVRQRTWGKWVAEIREPNRGRRLWLGSFPTALEAAHAYDEAARAMYGPTARVNFADNSTDANSGCTSAPSLMMSNGP 154
BLAST of Psat6g006200.1 vs. DB:Swiss
Match: DRE2C_ORYSJ (Dehydration-responsive element-binding protein 2C OS=Oryza sativa subsp. japonica OX=39947 GN=DREB2C PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.776e-29 Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 1 Query: 64 SRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEXXXXXXXXXRKLYGSEAKLN 282
SRKGCM+GKGGPEN C ++GVRQRTWGKWVAEIREPNRGARLWLGTF T+ +AA AYD+AAR LYG A+LN
Sbjct: 37 SRKGCMKGKGGPENQRCPFRGVRQRTWGKWVAEIREPNRGARLWLGTFNTALDAARAYDSAARALYGDCARLN 109
BLAST of Psat6g006200.1 vs. DB:Swiss
Match: DRE2F_ARATH (Dehydration-responsive element-binding protein 2F OS=Arabidopsis thaliana OX=3702 GN=DREB2F PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 9.516e-28 Identity = 59/88 (67.05%), Postives = 69/88 (78.41%), Query Frame = 1 Query: 67 RKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEXXXXXXXXXRKLYGSEAKLNLPDLSTPSAPSATISQ 330
+KG RGKGGP+NA C Y+GVRQRTWGKWVAEIREP + ARLWLG+F T+ EAA+AYD AA KLYG +A LNLP L + PS + SQ
Sbjct: 11 KKGPARGKGGPQNALCQYRGVRQRTWGKWVAEIREPKKRARLWLGSFATAEEAAMAYDEAALKLYGHDAYLNLPHLQRNTRPSLSNSQ 98
BLAST of Psat6g006200.1 vs. DB:Swiss
Match: DRE2E_ORYSJ (Dehydration-responsive element-binding protein 2E OS=Oryza sativa subsp. japonica OX=39947 GN=DREB2E PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.221e-26 Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 1 Query: 67 RKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEXXXXXXXXXRKLYGSEAKLNLPDL 294
+KG RGKGGP+NA+C Y+GVRQRTWGKWVAEIREPN+ RLWLG+F T+ EAALAYD AAR+LYG +A LNLP L
Sbjct: 11 KKGPTRGKGGPQNAACEYRGVRQRTWGKWVAEIREPNKRTRLWLGSFATAEEAALAYDEAARRLYGPDAFLNLPHL 86
BLAST of Psat6g006200.1 vs. DB:Swiss
Match: DRE2E_ARATH (Dehydration-responsive element-binding protein 2E OS=Arabidopsis thaliana OX=3702 GN=DREB2E PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.811e-21 Identity = 56/84 (66.67%), Postives = 64/84 (76.19%), Query Frame = 1 Query: 64 SRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREP--NRGA------RLWLGTFETSHEXXXXXXXXXRKLYGSEAKLNLPD 291
S+KGCMRGKGGPEN C ++GVRQR WGKWVAEIREP +RGA RLWLGTF T+ EAALAYD AA +YG A+LN P+
Sbjct: 52 SKKGCMRGKGGPENPVCRFRGVRQRVWGKWVAEIREPVSHRGANSSRSKRLWLGTFATAAEAALAYDRAASVMYGPYARLNFPE 135 The following BLAST results are available for this feature:
BLAST of Psat6g006200.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat6g006200.1_Ps_Cameor_v1a ID=Psat6g006200.1_Ps_Cameor_v1a; Name=Psat6g006200.1; organism=Pisum sativum; type=mRNA; length=1567bpback to top protein sequence of Psat6g006200.1_Ps_Cameor_v1a >Psat6g006200.1_Ps_Cameor_v1a ID=Psat6g006200.1_Ps_Cameor_v1a; Name=Psat6g006200.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=276bpback to top mRNA from alignment at chr6LG2:4393102..4394668- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Psat6g006200.1_Ps_Cameor_v1a ID=Psat6g006200.1_Ps_Cameor_v1a; Name=Psat6g006200.1; organism=Pisum sativum; type=mRNA; length=1567bp; location=Sequence derived from: chr6LG2:4393102..4394668- (Pisum sativumback to top Coding sequence (CDS) from alignment at chr6LG2:4393102..4394668- >Psat6g006200.1_Ps_Cameor_v1a ID=Psat6g006200.1_Ps_Cameor_v1a; Name=Psat6g006200.1; organism=Pisum sativum; type=CDS; length=1656bp; location=Sequence derived from: chr6LG2:4393102..4394668- (Pisum sativumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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