rna-KK1_019876

Transcript Overview


Name	rna-KK1_019876
Unique Name	rna-KK1_019876_Cc_Asha_v1.0
Type	mRNA
Organism	Cajanus cajan (pigeon pea)
Sequence length	606
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_1-CM003603.1	supercontig	Chr_1-CM003603.1:1482885..1487837 -	Cajanus cajan Asha genome v1.0	n/a
Chr_1-CM003603.1	supercontig	Chr_1-CM003603.1:1482885..1487837 -	Cajanus cajan Asha genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cajanus cajan Asha genome v1.0	2019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot	2019-10-17

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cccrR0011	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
cccrR0043	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
ccpsR022	Pisum sativum Cameor genome v1a	Pisum sativum
ccpsR024	Pisum sativum Cameor genome v1a	Pisum sativum
ccpsR033	Pisum sativum Cameor genome v1a	Pisum sativum
ccccR001	Cajanus cajan Asha genome v1.0	Cajanus cajan
ccpvR0004	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
ccvuR0003	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
ccvuR0016	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
caiccL0515	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
caiccL0518	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
caiccL0673	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
caccL0156	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
caccL0552	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
caccL0721	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
anccL0002	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anccL0005	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anccL0259	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anccL0379	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anccL0433	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anccL0833	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anccL0912	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
asccL0007	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
cctifR0010	Vicia faba cv. Tiffany genome v1.0	Vicia faba
cctifR0036	Vicia faba cv. Tiffany genome v1.0	Vicia faba
ccvfhR0010	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
ccvfhR0039	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
ccvrvR0014	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
ccvssR0010	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
ccvuaR0003	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
ccvssR0042	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
ccvuaR0020	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
canccL0553	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
canccL0728	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
avjccL0331	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjccL0697	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
carccL0594		Cicer arietinum
carccL0777		Cicer arietinum
ccccaR0000	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccccaR0054	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccvumR0009	Vigna umbellata FF25 genome v1.0	Vigna umbellata
ccvumR0042	Vigna umbellata FF25 genome v1.0	Vigna umbellata

Orthologs


Gene/Transcript	Assembly	Species
evm.model.Chr01.2319	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Ca_11345	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Vfaba.Hedin2.R1.2g111320.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Va03G085240.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
jg53553.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
rna-XM_014637929.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
rna-XM_004502240.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
rna-TanjilR_01560	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
Cr_13023.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
Ca_13622.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
Psat5g095480.1	Pisum sativum Cameor genome v1a	Pisum sativum
Ca_19683	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Vum_04G03222.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
Phvul.001G261400.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Vigun01g246800.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Cc_v2.0_00089.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-KK1_019876	gene-KK1_019876_Cc_Asha_v1.0	Cajanus cajan	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-KK1_019876	rna-KK1_019876_Cc_Asha_v1.0-protein	Cajanus cajan	polypeptide
rna-KK1_019876_Cc_Asha_v1.0	rna-KK1_019876_Cc_Asha_v1.0	Cajanus cajan	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1487739..1487837	rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1487739..1487837	Cajanus cajan	CDS
rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1487332..1487410	rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1487332..1487410	Cajanus cajan	CDS
rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1487042..1487211	rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1487042..1487211	Cajanus cajan	CDS
rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1486900..1486947	rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1486900..1486947	Cajanus cajan	CDS
rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1484044..1484127	rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1484044..1484127	Cajanus cajan	CDS
rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1482885..1483010	rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1482885..1483010	Cajanus cajan	CDS
rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1487739..1487837	rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1487739..1487837	Cajanus cajan	CDS
rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1487332..1487410	rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1487332..1487410	Cajanus cajan	CDS
rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1487042..1487211	rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1487042..1487211	Cajanus cajan	CDS
rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1486900..1486947	rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1486900..1486947	Cajanus cajan	CDS
rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1484044..1484127	rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1484044..1484127	Cajanus cajan	CDS
rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1482885..1483010	rna-KK1_019876_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1482885..1483010	Cajanus cajan	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1487739..1487837	rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1487739..1487837	Cajanus cajan	exon
rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1487332..1487410	rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1487332..1487410	Cajanus cajan	exon
rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1487042..1487211	rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1487042..1487211	Cajanus cajan	exon
rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1486900..1486947	rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1486900..1486947	Cajanus cajan	exon
rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1484044..1484127	rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1484044..1484127	Cajanus cajan	exon
rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1482885..1483010	rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1482885..1483010	Cajanus cajan	exon
rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1487739..1487837	rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1487739..1487837	Cajanus cajan	exon
rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1487332..1487410	rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1487332..1487410	Cajanus cajan	exon
rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1487042..1487211	rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1487042..1487211	Cajanus cajan	exon
rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1486900..1486947	rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1486900..1486947	Cajanus cajan	exon
rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1484044..1484127	rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1484044..1484127	Cajanus cajan	exon
rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1482885..1483010	rna-KK1_019876_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1482885..1483010	Cajanus cajan	exon

Homology

[Close]

BLAST of rna-KK1_019876 vs. DB:Swiss
Match: TOM20_SOLTU (Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum OX=4113 GN=TOM20 PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 7.461e-86
Identity = 129/192 (67.19%), Postives = 151/192 (78.65%), Query Frame = 1

Query:   13 QEDFDRLLLFEHTRKTAEAKYAENPLDADNLTKWGGALIELSAFQNPRDSKTMIDDAISKLEEALLLNPTKHDTLWCLGNGHTSYAFLTPDTAEAKGYFDKAHEYFQKAVDEDPGNELYTKSLEVAVKAPELHMEIHKNG-LGQMNSTGFSATSKGKESKRQKSNDLKYDIFGWIILAVGIVAWVGMAKSNI 585
            Q +FDRLL FEH RK+AE  YA+NPLDADNLT+WGGAL+ELS FQ   +SK MI DA SKLEEAL +NP KHD LWCLGN HTS+ FLTPD  EAK YF+KA + FQ+A D DP N+LY KSLEV  KAPELHMEIH++G + Q  +   S ++  K SK+ KS+DLKYDIFGW+ILAVGIVAWVG AKSN+
Sbjct:    4 QSEFDRLLFFEHARKSAETTYAQNPLDADNLTRWGGALLELSQFQPVAESKQMISDATSKLEEALTVNPEKHDALWCLGNAHTSHVFLTPDMDEAKVYFEKATQCFQQAFDADPSNDLYRKSLEVTAKAPELHMEIHRHGPMQQTMAAEPSTSTSTKSSKKTKSSDLKYDIFGWVILAVGIVAWVGFAKSNM 195

[Close]

BLAST of rna-KK1_019876 vs. DB:Swiss
Match: TO202_ARATH (Mitochondrial import receptor subunit TOM20-2 OS=Arabidopsis thaliana OX=3702 GN=TOM20-2 PE=1 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 1.825e-80
Identity = 117/214 (54.67%), Postives = 152/214 (71.03%), Query Frame = 1

Query:    1 MEFSQEDFDRLLLFEHTRKTAEAKYAENPLDADNLTKWGGALIELSAFQNPRDSKTMIDDAISKLEEALLLNPTKHDTLWCLGNGHTSYAFLTPDTAEAKGYFDKAHEYFQKAVDEDPGNELYTKSLEVAVKAPELHMEIHKNGLGQ-------------MNSTGFSATSKGKESKRQKSNDLKYDIFGWIILAVGIVAWVGMAKSNIPPPPPR 603
            MEFS  DF+RL++FEH RK +EA+Y  +PLD++NL KWGGAL+ELS FQ   ++K M++DAISKLEEAL +NP KH  LWC+ N +T++AF   D  EAK +FDKA EYFQ+A +EDPGN+ Y KSL+ ++KAPELHM+    G+GQ             M S+  S +SK    K++++ +  YD+ GWIILA GIVAWVGMAKS  PPPP R
Sbjct:    1 MEFSTADFERLIMFEHARKNSEAQYKNDPLDSENLLKWGGALLELSQFQPIPEAKLMLNDAISKLEEALTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENEDPGNDTYRKSLDSSLKAPELHMQFMNQGMGQQILGGGGGGGGGGMASSNVSQSSK----KKKRNTEFTYDVCGWIILACGIVAWVGMAKSLGPPPPAR 210

[Close]

BLAST of rna-KK1_019876 vs. DB:Swiss
Match: TO203_ARATH (Mitochondrial import receptor subunit TOM20-3 OS=Arabidopsis thaliana OX=3702 GN=TOM20-3 PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 1.533e-77
Identity = 109/200 (54.50%), Postives = 141/200 (70.50%), Query Frame = 1

Query:   10 SQEDFDRLLLFEHTRKTAEAKYAENPLDADNLTKWGGALIELSAFQNPRDSKTMIDDAISKLEEALLLNPTKHDTLWCLGNGHTSYAFLTPDTAEAKGYFDKAHEYFQKAVDEDPGNELYTKSLEVAVKAPELHMEIHKNGLGQ--MNSTGFSATSKGKESKRQKSNDLKYDIFGWIILAVGIVAWVGMAKSNIPPPPPR 603
            ++ +FDR+LLFE  R+ AE  Y  NPLDADNLT+WGG L+ELS F +  D+K MI +AI+K EEALL++P K + +WC+GN +TS+AFLTPD  EAK  FD A ++FQ+AVDE P N  Y KSLE+  KAP+LH E +K GLG   M      A    K  K +KS+D KYD  GW+ILA+G+VAW+  AK+N+P  PPR
Sbjct:    3 TETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYKQGLGSQPMGRVEAPAPPSSKAVKNKKSSDAKYDAMGWVILAIGVVAWISFAKANVPVSPPR 202

[Close]

BLAST of rna-KK1_019876 vs. DB:Swiss
Match: TOM20_ORYSI (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. indica OX=39946 GN=TOM20 PE=2 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 1.379e-69
Identity = 101/195 (51.79%), Postives = 139/195 (71.28%), Query Frame = 1

Query:   19 DFDRLLLFEHTRKTAEAKYAENPLDADNLTKWGGALIELSAFQNPRDSKTMIDDAISKLEEALLLNPTKHDTLWCLGNGHTSYAFLTPDTAEAKGYFDKAHEYFQKAVDEDPGNELYTKSLEVAVKAPELHMEIHKNGLGQMNSTGFSATSKGKESKRQKSNDLKYDIFGWIILAVGIVAWVGMAKSNIPPPPPR 603
            D +R+  F+   + A+  Y +NP DADNLT+WGGAL+ELS  +N  +S   ++DA SKLEEAL ++P K D LWCLGN  TS+ F T DT +A  +F+KA + FQKAVD +P N+LY KSL+++ KAPELHMEIH+  +    S   S+TS  ++S+++K +D  YD+FGW++L VG+V WVG+AKSN PP  PR
Sbjct:    8 DPERMFFFDLACQNAKVTYEQNPHDADNLTRWGGALLELSQMRNGPESLKCLEDAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEIHRQ-MASQASQAASSTSNTRQSRKKKDSDFWYDVFGWVVLGVGMVVWVGLAKSNAPPQAPR 201

[Close]

BLAST of rna-KK1_019876 vs. DB:Swiss
Match: TOM20_ORYSJ (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. japonica OX=39947 GN=TOM20 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 1.490e-68
Identity = 99/195 (50.77%), Postives = 136/195 (69.74%), Query Frame = 1

Query:   19 DFDRLLLFEHTRKTAEAKYAENPLDADNLTKWGGALIELSAFQNPRDSKTMIDDAISKLEEALLLNPTKHDTLWCLGNGHTSYAFLTPDTAEAKGYFDKAHEYFQKAVDEDPGNELYTKSLEVAVKAPELHMEIHKNGLGQMNSTGFSATSKGKESKRQKSNDLKYDIFGWIILAVGIVAWVGMAKSNIPPPPPR 603
            D +R+  F+   + A+  Y +NP DADNLT+WGGAL+ELS  +N  +S   ++DA SKLEEAL ++P K D LWCLGN  TS+ F T DT +A  +F+KA + FQKAVD +P N+LY KSL+++ KAPELHMEIH+    Q +    S ++  +  K++K +D  YD+FGW++L VG+V WVG+AKSN PP  PR
Sbjct:    8 DPERMFFFDLACQNAKVTYEQNPHDADNLTRWGGALLELSQMRNGPESLKCLEDAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEIHRQMASQASQAASSTSNTRQSRKKKKDSDFWYDVFGWVVLGVGMVVWVGLAKSNAPPQAPR 202

[Close]

BLAST of rna-KK1_019876 vs. DB:Swiss
Match: TO204_ARATH (Mitochondrial import receptor subunit TOM20-4 OS=Arabidopsis thaliana OX=3702 GN=TOM20-4 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.880e-63
Identity = 95/192 (49.48%), Postives = 129/192 (67.19%), Query Frame = 1

Query:   13 QEDFDRLLLFEHTRKTAEAKYAENPLDADNLTKWGGALIELSAFQNPRDSKTMIDDAISKLEEALLLNPTKHDTLWCLGNGHTSYAFLTPDTAEAKGYFDKAHEYFQKAVDEDPGNELYTKSLEVAVKAPELHMEIHKNGLGQMNSTGFSATSKGKESKRQKSNDLKYDIFGWIILAVGIVAWVGMAKSNIP 588
            Q + +RL++FEH RK AEA Y +NPLDA+NLT+W GAL+ELS FQ   + K MI +AI KL EAL+++P KHD LW +GN H S+ FL+ D  EA   F+KA ++FQ AV+E P +ELY KSL +A KAPELH             T   +++  K  K++K+++ KYD+FGW+ILA  +VAW+  A S  P
Sbjct:    4 QNENERLMVFEHARKVAEATYVKNPLDAENLTRWAGALLELSQFQT--EPKQMILEAILKLGEALVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEEQPESELYRKSLTLASKAPELH----------TGGTAGPSSNSAKTMKQKKTSEFKYDVFGWVILASYVVAWISFANSQTP 183

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BLAST of rna-KK1_019876 vs. DB:Swiss
Match: TO201_ARATH (Mitochondrial import receptor subunit TOM20-1 OS=Arabidopsis thaliana OX=3702 GN=TOM20-1 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.559e-59
Identity = 96/186 (51.61%), Postives = 122/186 (65.59%), Query Frame = 1

Query:   22 FDRLLLFEHTRKTAEAKYAENPLDADNLTKWGGALIELSAFQNPRDSKTMIDDAISKLEEALLLNPTKHDTLWCLGNGHTSYAFLTPDTAEAKGYFDKAHEYFQKAVDEDPGNELYTKSLEVAVKAPELHMEIHKNG-LGQMNSTGFSATSKGKESKRQKSNDLKYDIFGWIILAVGIVAWVGMAK 576
             D+L  FE  RK AE  Y  NP DADNL +WG AL+ELS FQN  DS  MI DAISKLE+A+L++P KHD +WCLGN +TSYA LTPD  +A+  F  A+ +F  AV + P N++Y KSLE+A KAP+LH   HKN  L  +      A    K  K +KS+D KY + GW+ILA+G+VA +   K
Sbjct:    1 MDKLNFFEEIRKDAEETYKLNPEDADNLMRWGEALLELSQFQNVIDSLKMIQDAISKLEDAILIDPMKHDAVWCLGNAYTSYARLTPDDTQARLNFGLAYLFFGIAVAQQPDNQVYHKSLEMADKAPQLHTGFHKNRLLSLLGGVETLAIPSPKVVKNKKSSDEKYIVMGWVILAIGVVACISFRK 186

The following BLAST results are available for this feature:

BLAST of rna-KK1_019876 vs. DB:Swiss

BLAST of rna-KK1_019876 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 7

Position :

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Match Name	E-value	Identity	Description
TOM20_SOLTU	7.461e-86	67.19	Mitochondrial import receptor subunit TOM20 OS=Sol...	[more]
TO202_ARATH	1.825e-80	54.67	Mitochondrial import receptor subunit TOM20-2 OS=A...	[more]
TO203_ARATH	1.533e-77	54.50	Mitochondrial import receptor subunit TOM20-3 OS=A...	[more]
TOM20_ORYSI	1.379e-69	51.79	Probable mitochondrial import receptor subunit TOM...	[more]
TOM20_ORYSJ	1.490e-68	50.77	Probable mitochondrial import receptor subunit TOM...	[more]
TO204_ARATH	9.880e-63	49.48	Mitochondrial import receptor subunit TOM20-4 OS=A...	[more]
TO201_ARATH	1.559e-59	51.61	Mitochondrial import receptor subunit TOM20-1 OS=A...	[more]

InterPro

Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF06552	TOM20_plant	coord: 8..192 e-value: 5.3E-88 score: 293.7
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 1..153 e-value: 9.1E-69 score: 231.9
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 22..127

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_1-CM003603.1:1482885..1487837-
coding sequence from alignment at Chr_1-CM003603.1:1482885..1487837-

mRNA sequence

>rna-KK1_019876_Cc_Asha_v1.0 ID=rna-KK1_019876_Cc_Asha_v1.0; Name=rna-KK1_019876; organism=Cajanus cajan; type=mRNA; length=606bp
ATGGAGTTTTCTCAAGAAGATTTTGATCGCTTACTGTTATTCGAGCACAC
GCGAAAGACCGCTGAAGCAAAGTACGCTGAAAACCCTCTCGACGCCGATA
ATCTGACCAAATGGGGAGGAGCTTTGATCGAGTTGTCCGCATTCCAAAAC
CCTAGGGATTCCAAGACAATGATTGATGATGCCATTTCGAAGCTGGAGGA
GGCTTTGTTGCTGAATCCAACGAAGCATGACACTCTTTGGTGCTTGGGAA
ATGGGCACACGTCTTACGCGTTTCTAACGCCTGATACAGCCGAGGCAAAG
GGTTATTTTGACAAGGCGCATGAGTATTTTCAGAAAGCTGTAGATGAGGA
TCCTGGGAATGAGCTCTATACAAAATCCTTGGAAGTTGCTGTGAAGGCCC
CTGAACTACACATGGAGATCCATAAAAATGGGCTTGGCCAGATGAATAGC
ACCGGATTCTCCGCCACTTCAAAAGGAAAGGAATCTAAAAGGCAGAAGAG
CAATGACCTGAAGTATGACATATTTGGATGGATTATTCTTGCAGTGGGTA
TAGTAGCATGGGTGGGAATGGCCAAATCTAACATTCCCCCGCCACCTCCA
AGATAA

protein sequence of rna-KK1_019876_Cc_Asha_v1.0

>rna-KK1_019876_Cc_Asha_v1.0 ID=rna-KK1_019876_Cc_Asha_v1.0; Name=rna-KK1_019876_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=201bp
MEFSQEDFDRLLLFEHTRKTAEAKYAENPLDADNLTKWGGALIELSAFQN
PRDSKTMIDDAISKLEEALLLNPTKHDTLWCLGNGHTSYAFLTPDTAEAK
GYFDKAHEYFQKAVDEDPGNELYTKSLEVAVKAPELHMEIHKNGLGQMNS
TGFSATSKGKESKRQKSNDLKYDIFGWIILAVGIVAWVGMAKSNIPPPPP
R

mRNA from alignment at Chr_1-CM003603.1:1482885..1487837-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-KK1_019876_Cc_Asha_v1.0 ID=rna-KK1_019876_Cc_Asha_v1.0; Name=rna-KK1_019876; organism=Cajanus cajan; type=mRNA; length=4953bp; location=Sequence derived from: Chr_1-CM003603.1:1482885..1487837- (Cajanus cajan
ATGGAGTTTTCTCAAGAAGATTTTGATCGCTTACTGTTATTCGAGCACAC
GCGAAAGACCGCTGAAGCAAAGTACGCTGAAAACCCTCTCGACGCCGATG
TACGTATCGTTCTTCATTATACCCTAATTAACCCTTCTTCGTTAACACTC
ACGCCTATGAGTTATAGTTACTTTCCTCACACGTCTGTTGTTCCGCAATT
TGTGAAGGTTTTTGTTACAAGTCCCGTAATGCATGAAATTGTTGTTAATC
ATATTATTTTTCTGTTATTAGCCTTTGGTAATTGGTACATTACATGGAAA
ATTGAATTGGAGACGTTGTTTCTTGGAGTTGTGTGTTTTATGACATTGTA
TTTGTTGTTTAGAAAATGGATTAGGTTTTCATTTCAAGTGTGTCTCAACA
TATCTATATCTATATATATTCATACAGAATCTGACCAAATGGGGAGGAGC
TTTGATCGAGTTGTCCGCATTCCAAAACCCTAGGGATTCCAAGACAATGA
TTGATGGTATATCACGTGTTAAATAGAGCAAAATTTAAGAGTGAATTTCT
GTTTTCGCCTGAAGGGGAGGGCGAGATAATGTGATTGATAGTTTTGGGTT
TTGGTGGGAAATAACGAACTAAACAGATGCCATTTCGAAGCTGGAGGAGG
CTTTGTTGCTGAATCCAACGAAGCATGACACTCTTTGGTGCTTGGGAAAT
GGGCACACGTCTTACGCGTTTCTAACGCCTGATACAGCCGAGGCAAAGGG
TTATTTTGACAAGGCGCATGAGTATTTTCAGAAAGCTGTAGATGAGGTAA
TTTTTTGCTCCTTTCGTTCCTCTTCATGTATTCTTACTAGTTGTGCCTGT
AAATCTACGGCTTACTTAGTGGTGGATTATGAATTTGTAGGATCCTGGGA
ATGAGCTCTATACAAAATCCTTGGAAGTTGCTGTGAAGGTAATGGAATTA
CTATGACCATTGTATCAATATTATTTGTACACTTGGTTCTATTTTCATGT
TCATAATTTTGCTATAAATAGATCAAACCAGCTAAAACTGCCCTTTCTAC
ATGGTTTTTGGCTGCAAAGTGTTTGTGTTTTCATAGTTGATGGGAACACA
ACTTGCTGGGTATATGTTAGTGTAAACTAGTTCACTATCAGTGTTAGTGT
TTCTGCTGTTTATTACAGGGTCCTAATTACGAGATTTTAATGTTTATATT
GACTGATTTATACTCTGTTGTTTAGGATTCAGCAAGTCTTATGGATGACT
GAAACAAAATAAATTATTTGGCATGTTTGCTCTCTAAATCTTAACGCTCA
CTATAACAGAAATTTCAGGTTAACTAGTATAAGTATTAAAGCAATCAAAA
TTGGATAGGAGACACCTAATGTTCTTTATGACTTGGTGTGGATCAAAGCA
TAATATATAGTTTTGTGTAGTGCGTTGAACACTCACTTGTGTTTCTTAAT
TCTTATCATTAAAAACTGATTTAAAAAATAAGAAACAATAATAATAAAAT
TTGATTGTTTTCTTAAAATAAGAACCAAAGAAACAGAGAGGAAAGGAGAA
ATTGTGTTCAGAGGTATGTTGCATACATGTCAAAACAACTAAGAGAAAGA
AAATCCATGCAGAAGAAAATCAAAACAAAATAATAAGCATTAATGTGGCA
AACTACAAATTTGAATAGAAAAGGCACAATGCAGGGAAACAAAATAAGCA
TTATACTGCAGAGTTCAGAGCTTCACATCAGATATGTGGACAAAATTGAT
CATTGCTTTGGCCTTTAAAAAACCAACGAGCAGAGAAGGGGGTTTTCTTC
AAAGAGGGGACATTGGGAAAGGCATCTGAACAAGAGTGGAAAAAATAAGT
TAGAGAGGTTTAGATAGTAGAGAGAAGGACACTCGGTAATCCTGATCTGT
GGTCTTTGGCTTTGGTGCAAAAGAGAGGTAAGTTTTCTCATTTTCTCTAG
AGTTATTTGCTGCCTAGTCGTATGAGAATGTAATTTCATTGATAGGGTAT
GATCTAGCTAGCCAGATGTATTTTGTTGTGACCCCATGAACCGTTAAATG
TGCTTTCAACCTTTGTAGTTGTAGATCATTTATCAACCATTCTTGCCAAG
CCCTAAGCCTGTAACCTCGTTCCTCATGCTCTGCAGTTCAACTTTAAGTT
GTGAACCACTACTCTTCCAGACCTACACCACTATATACTTTCAAGCATTG
AATTTCTATTCCATTGTCATCCTCAAACGGTCCCTCATCCAAATGTCTTT
TATGTTATTTATTCTTATTTATCTATTTTTGTGCCAATGTATGAATAGCT
TTAAGATTGGAGCACATTTAAATTGTGGGATCTGGGTAGTATGAGTTGTC
AAATGAAATATGCGGTTTTAATCTTTGGACTTAACTTCACGTGTACTTAA
TGGGCCAATATTGTCTAATATATCAGTTTTTCTTTTATTTATTATTCATT
TTGTTTTGGTCACAGGATTTCTCTGAGACTTAAAGTTTTTAGTTAGGTAT
ATGATCATTCAAAATTGCAGTAGAAAAAATGAATATTATATATGTTTATG
ATAAAAACAAACAAACAAATAAATCAAACTACGAAAAACACACACACACA
CAAGACAAACCAAAACTATTTTATTTTTTTAATTTGGTTGCTGGTATGAC
TACTTGATTGTTTTAAAACTTATCATTATTTAATGTTACCTTTACTTTGT
TTATTGAAAATGTACTTGAATTATTGAAATGTTTTCTTAATTGGTGATCT
TGGACTGAAAAAAAATAGGTGCTAAAAATTATGTAATATAATTAAGTGGT
TAGCTAGGCTGTGATAAGACTGCTAGTTATTTTTATGATATTTGTAAAGG
GTCATTTGAGCCATGAAAGATTGGTGATCCATAATTTTCATAAGAATTTT
ATATTGATGTCAAATTTAAAAATGTTAAAAATTAATTTGTTTGAATAAAA
AAGATTAGCTGAGATGCAATAGCTTGTGAATTTTGTTTTATTTATTAAGG
GTTTCCTGAATTGTGATAACTGTGATTCAAAATTTTTTAATTCAATCAAA
TGTACTTGTTTTCAATTTATTAAAATTATAACTAATTCACCCATAATCAT
TTTTAGAGAACAACGCAGCTATGAATTCTTACTTTTGGTGATATGTAGGT
GCAGGAATTTTGCTTTCCTTGCAAATAAATAATTGTGTTGATTTTATTTT
TAAAGGGAAAACAAATATTTTTAACTTTATTAATAATTTGTATATTTAAA
TTTAGGGTAAACATTTTAAAATGGGGATATATTACGCGTGCAATTTTATA
TTGTTTTTCATTATTCCTTGTGCATAACTAGAATTTTTAACTTAATATCT
ATTTTCAGAGGCTAGTTTTTAATATATATATATATATTCTAAAATAAAAA
TTGATTGCAACTCCATTTATTTTTTTAATAAATCTTTAGTTACTTATTGT
GGAGATGCCTTCAAGTAAGTAGTAGATTAAGTTGTGTTTTCTGGTTGATG
GTAAAACATTGTTTTTGTGATTTCATAACCTTTATTCACTTGCCTGATAA
ATAAGTCTTAATGGTACTGCAACTTTAGTATTCTTTACATAAACAAATTT
AAATTATTTCCATAGTGCAACTGCTTTCTTGATTCATTATATTTCTGTTA
ACAATTGTTCACCGTTGTATCTTTTCTACTCTGATGAGTTGCTGTGAACA
TGCCTCATAGGCCCCTGAACTACACATGGAGATCCATAAAAATGGGCTTG
GCCAGATGAATAGCACCGGATTCTCCGCCACTTCAAAAGGAAAGGTTGTA
TTAATCGAAATTTCATTGCATTTAATTAAATTCTTGTCATATTTGCACAA
TCACTGATTAGTGACTTTAAATCAACTTCAACCGGCTGCTTTGTCAAGTT
TATGGAAGTGGCATCTTGATAACTTAAAATGCACAAAGCAGCTCAAATGG
AGTTCTTGTCCTGTGGATAAAGCCTTGTTAAGAAGTTAGAACCATTATGT
CTTAATTTTTGGGGTACAAGGCTTCTAATTTAGGCAAGTCATTAGAACTT
GCATCATGAACAAAATTTTCCATTTGAAGTAATGCAAACAACACACCACC
ATGTATATTAGAAAAGTCTTTCTTACCTTTTTGTTAGGAAATAGGAATAG
CACTTGACTCGTTTTGAGTTATGTTGGAGTTAGATGCATGTTGATACTTC
TACGCTTTTGCTAATAGTTTACGTGCGGATGCACCCTGTCTATCTTGTCT
GTGATATTTCTTGATCTTTCTATCTGTATTGCTTGTTTGCCTTTTTTTGT
TAATTGTAGATATAATTTAATTTAATCTAAATAAGGAATTGGAAAACATT
TTCCAGAATTGATGTCAGTTTAAATAGATATGGTAATTTATTTGTATTGC
ATTGTTTCTCTGTTTGTTTGTCATATATTTATTTACTGGCCACAGGTCTG
TCAAAGTACTGCCACACTATGGTTGGCCTCTTGGCTGCCTATAGTACGAT
AGAAAATTTTGAGTTTTGTATAGCTAACTAGGGTGGTGTTGGTCAGCTTT
GTGTTCCGAGATAATTACTCTTTTGTTACTCAGATCCTAAGTACTAAATG
TTGAAGATGTAGATAACAAGCTTTGGGTCCCTTGAACTGCTCCTCTTCTA
TTCTAGCTTGCCATATTTTTTCTAAATAATGAAAGTAACCGTGTGGGATA
AAATTGTTTCTCGTGATTATTTTGTATTTACAATCTAAAATGAAGAATAT
TATTATTATTATTATTATTTATAATTGATGCATGTCTGCTTTAGTCTGTT
TATAGAAGCTTGTTTGGCTCGTTTCAGGAATCTAAAAGGCAGAAGAGCAA
TGACCTGAAGTATGACATATTTGGATGGATTATTCTTGCAGTGGGTATAG
TAGCATGGGTGGGAATGGCCAAATCTAACATTCCCCCGCCACCTCCAAGA
TAA

Coding sequence (CDS) from alignment at Chr_1-CM003603.1:1482885..1487837-

>rna-KK1_019876_Cc_Asha_v1.0 ID=rna-KK1_019876_Cc_Asha_v1.0; Name=rna-KK1_019876; organism=Cajanus cajan; type=CDS; length=1212bp; location=Sequence derived from: Chr_1-CM003603.1:1482885..1487837- (Cajanus cajan
ATGGAGTTTTCTCAAGAAGATTTTGATCGCTTACTGTTATTCGAGCACAC
GCGAAAGACCGCTGAAGCAAAGTACGCTGAAAACCCTCTCGACGCCGATA
TGGAGTTTTCTCAAGAAGATTTTGATCGCTTACTGTTATTCGAGCACACG
CGAAAGACCGCTGAAGCAAAGTACGCTGAAAACCCTCTCGACGCCGATAA
TCTGACCAAATGGGGAGGAGCTTTGATCGAGTTGTCCGCATTCCAAAACC
CTAGGGATTCCAAGACAATGATTGATGAATCTGACCAAATGGGGAGGAGC
TTTGATCGAGTTGTCCGCATTCCAAAACCCTAGGGATTCCAAGACAATGA
TTGATGATGCCATTTCGAAGCTGGAGGAGGCTTTGTTGCTGAATCCAACG
AAGCATGACACTCTTTGGTGCTTGGGAAATGGGCACACGTCTTACGCGTT
TCTAACGCCTGATACAGCCGAGGCAAAGGGTTATTTTGACAAGGCGCATG
AGTATTTTCAGAAAGCTGTAGATGAGATGCCATTTCGAAGCTGGAGGAGG
CTTTGTTGCTGAATCCAACGAAGCATGACACTCTTTGGTGCTTGGGAAAT
GGGCACACGTCTTACGCGTTTCTAACGCCTGATACAGCCGAGGCAAAGGG
TTATTTTGACAAGGCGCATGAGTATTTTCAGAAAGCTGTAGATGAGGATC
CTGGGAATGAGCTCTATACAAAATCCTTGGAAGTTGCTGTGAAGGATCCT
GGGAATGAGCTCTATACAAAATCCTTGGAAGTTGCTGTGAAGGCCCCTGA
ACTACACATGGAGATCCATAAAAATGGGCTTGGCCAGATGAATAGCACCG
GATTCTCCGCCACTTCAAAAGGAAAGGCCCCTGAACTACACATGGAGATC
CATAAAAATGGGCTTGGCCAGATGAATAGCACCGGATTCTCCGCCACTTC
AAAAGGAAAGGAATCTAAAAGGCAGAAGAGCAATGACCTGAAGTATGACA
TATTTGGATGGATTATTCTTGCAGTGGGTATAGTAGCATGGGTGGGAATG
GCCAAATCTAACATTCCCCCGCCACCTCCAAGATAAGAATCTAAAAGGCA
GAAGAGCAATGACCTGAAGTATGACATATTTGGATGGATTATTCTTGCAG
TGGGTATAGTAGCATGGGTGGGAATGGCCAAATCTAACATTCCCCCGCCA
CCTCCAAGATAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

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