rna-KK1_019888
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_019888 vs. DB:Swiss
Match: PUB6_ARATH (U-box domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=PUB6 PE=2 SV=2) HSP 1 Score: 1003.43 bits (2593), Expect = 0.000e+0 Identity = 507/771 (65.76%), Postives = 604/771 (78.34%), Query Frame = 1 Query: 1 MDVAELEENLFAAGDAKLHGEMCKCLSAIYCKILSLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLKRVEDIVPQSIGCQIDEIVNELASTVFALDPIEKQVGDDLIALLQQGRKFSDSNDCNELECFHLTATRIGITSSRAALTERRCLKKLIDRARAEEDKRKESIIAFLLHLMRKYSKLFRSEFSDDNDSQGSTPCSPTDGIPG----GHFDRQLSKLSSFNFKP-NNRKSGQMLLPPEELRCPISLQLMNDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQKLSHLSLTPNYCVKGLVASWCEQNGVPIPEGPPESLDYHYWRLALSDSESTNSRSVNSVGSCKLKSVKVVPVXXXXXXXXXXXXXXXXXXXXXXGN-----EQYLGFLNFLTEGNNWKRKCKVVEQLRRVLRDDEEARIFMGANGFVEAFMQFLQSAMHEGDVMALDNGAMALFNLAVNNNRNKEIMISAGILSLLEEMNSKSSSYGCAAALYLNLSCLEEAKRVIGTSQAVQFLIQILHAETEVLCKLDSLHALYNLSTVPDNIPNLLSSGIVNGLQTLFVSQGDSTWTEKCIAVLINLAVSQEGREEIMLAPGLISALASTLDTGEPLEQEQAASCLLILCNRSEKCCELVLQEGVIPALVSISVNGTSRGREKSQKLLMLFREQRQREHSAAKTDEGESESSDLSM-LP--------ETKPLCKSISRRKAVGKAFSFLWKSKSYSV 2256 MDV+ELEENLFAA DAKLHG+MCK LSA+YCK+LS+FPSLE ARPRSKSGIQ LCSLH+ALEKAKN+LQHCSECSKLYLAITGD+VLLKFEKAK AL DSL+RVEDIVP SIG QI +IV EL T F LDP EK+VGD +IALLQQG+KF + +D ELE FH ATR+ ITSSR+AL ERR LKK+IDRAR EEDKRKESI+A+LLHLMRKYSKLFRSE D+NDS STPCSPT P F RQLSK S N+KP N+RKSGQM +PPEELRCPISLQLM DPVIIASGQTYERVCIEKWF DGHN+CPKTQQ+L HLSLTPNYCVKGL+ASWCEQNG+ +P GPPESLD +YWRLA+SDSES NS+SV+SVG C K ++VVP+EES E + ++ + E + E Y L + + + +KCKVVE +R +L+D+EEARI MGANGFVEAF+QFL+SA+H+ + A + GAMALFNLAVNNNRNKE+M+++G++ LLE+M S S S G A ALYLNLSCLE+AK VIG+SQAV F + +L +T+ CKLD+LHALYNLST NIP LLSS I+ LQ L S G+ W EK +AVL+NLA S+EG+EE++ G+IS LA+ LDTG+ +EQEQA SCL+ILC SE C ++VLQEGVIP+LVSISVNG+ RGR+KSQKLLMLFREQR R+ + +E ++ M +P E KPL KSISRRK + + FSFLWK KS+S+ Sbjct: 1 MDVSELEENLFAASDAKLHGDMCKELSAVYCKVLSIFPSLEEARPRSKSGIQTLCSLHIALEKAKNILQHCSECSKLYLAITGDAVLLKFEKAKSALIDSLRRVEDIVPSSIGSQILDIVGELEHTKFLLDPSEKEVGDRIIALLQQGKKFDNGSDSTELEIFHQAATRLSITSSRSALAERRALKKVIDRARVEEDKRKESIVAYLLHLMRKYSKLFRSEMMDENDSPCSTPCSPTGQGPNEDRVNAFGRQLSKFGSINYKPMNSRKSGQMPIPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNSCPKTQQQLPHLSLTPNYCVKGLIASWCEQNGITVPTGPPESLDLNYWRLAMSDSESPNSKSVDSVGLCTPKDIRVVPLEESSTIESERQQKEKNNAPDEVDSEINVLEGYQDILAIVDKEEDLAKKCKVVENVRILLKDNEEARILMGANGFVEAFLQFLESAVHDNNAAAQETGAMALFNLAVNNNRNKELMLTSGVIPLLEKMISCSQSQGPATALYLNLSCLEKAKPVIGSSQAVSFFVNLLLQDTKTQCKLDALHALYNLSTYSPNIPTLLSSNIIKSLQVL-ASTGNHLWIEKSLAVLLNLASSREGKEEMITTQGMISTLATVLDTGDTVEQEQAVSCLVILCTGSESCIQMVLQEGVIPSLVSISVNGSPRGRDKSQKLLMLFREQRHRDQPSPNKEEAPRKTVSAPMAIPAPVSAPESEVKPLTKSISRRKTMTRPFSFLWK-KSHSI 769
BLAST of rna-KK1_019888 vs. DB:Swiss
Match: PUB7_ARATH (U-box domain-containing protein 7 OS=Arabidopsis thaliana OX=3702 GN=PUB7 PE=2 SV=1) HSP 1 Score: 991.104 bits (2561), Expect = 0.000e+0 Identity = 514/783 (65.64%), Postives = 602/783 (76.88%), Query Frame = 1 Query: 1 MDVAELEENLFAAGDAKLHGEMCKCLSAIYCKILSLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLKRVEDIVPQSIGCQIDEIVNELASTVFALDPIEKQVGDDLIALLQQGRKFSDSNDCNELECFHLTATRIGITSSRAALTERRCLKKLIDRARAEEDKRKESIIAFLLHLMRKYSKLFRSEFSDDNDSQGSTPCSPTDGIPGGH-FDRQLSKLSSFNFKP-NNRKSGQMLLPPEELRCPISLQLMNDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQKLSHLSLTPNYCVKGLVASWCEQNGVPIPEGPPESLDYHYWRLALSDSESTNSRSVNSVGSCKLKSVKVVPVXXXXXXXXXXXXXXXXXXXXXXGN--------EQYLGFLNFLTEGNNWKRKCKVVEQLRRVLRDDEEARIFMGANGFVEAFMQFLQSAMHEGDVMALDNGAMALFNLAVNNNRNKEIMISAGILSLLEEMNSKSSSYGCAAALYLNLSCLEEAKRVIGTSQAVQFLIQILHAETEVLCKLDSLHALYNLSTVPDNIPNLLSSGIVNGLQTLFVSQGDSTWTEKCIAVLINLAVSQEGREEIMLAPGLISALASTLDTGEPLEQEQAASCLLILCNRSEKCCELVLQEGVIPALVSISVNGTSRGREKSQKLLMLFREQR-QREHSAAKTDE------------------GESESSDLSMLPETKPLCKSISRRKAVGKAFSFLWKSKSYSVSQ 2262 MDV ELEENLFAA DAKLHG+MCK LS + CK+LS+FPSLE ARPRSKSGIQALCSLH+ALEKAKN+LQHCSECSKLYLAITGD+VLLKFEKAK AL D LKRVEDIVP SIG QI EIV EL +T F LDP EK+VGD +IALLQQG+KF + ND ELE FH ATR+ ITSSR AL ERR LKKLIDRARAEEDKRKESI+A+LLHLMRK SKLFRSE D+NDS GS PCSP + H F RQLS+ S N KP N+ SGQM +PPEELRCPISLQLM DPVIIASGQTYERVCIEKWF DGHNTCPKTQQ+L H+SLTPN CVKGL+ASWCEQNG IP GPPES D YWRLALSDSEST S+SVNS+GS KLK VK+VP+EE+G + + ESF + ++ E+Y L L E ++KCKVVE++R +L+DDEEARIFMGANGFVEA ++FL SA+ + + A D+GAMALFNLAVNNNRNKE+M+++G++ LLE+M S + S+G A ALYLNLSCL+EAK VIG+SQAV FL+Q+L E E CKLD+LHALYNLST NIP LLSS I+ LQ L S G++ W EK +AVL+NLA SQEG++E + + G+IS+LA+ LD G+ EQEQA SCLLILCN E C ++VLQEGVIP+LVSISVNGT RGREKSQKLLMLFRE+R QR+ ++ DE G + +S E + L KS+SRRK++ + FSF WK KSYSV + Sbjct: 1 MDVTELEENLFAASDAKLHGDMCKELSGVLCKVLSIFPSLEGARPRSKSGIQALCSLHIALEKAKNILQHCSECSKLYLAITGDAVLLKFEKAKIALIDGLKRVEDIVPSSIGSQILEIVGELENTRFMLDPSEKEVGDQIIALLQQGKKFDNCNDNTELEIFHRAATRLSITSSRVALAERRALKKLIDRARAEEDKRKESIVAYLLHLMRKCSKLFRSEILDENDSPGSYPCSPNEDHGSVHGFGRQLSRFGSLNDKPMNSINSGQMPVPPEELRCPISLQLMCDPVIIASGQTYERVCIEKWFSDGHNTCPKTQQQLPHISLTPNNCVKGLIASWCEQNGTQIPSGPPESQDLDYWRLALSDSESTKSQSVNSIGSYKLKGVKIVPLEENGTTVVERQNTEESFVSDDDDEEDSDINVLERYQDLLAVLNEEEGLEKKCKVVEKIRLLLKDDEEARIFMGANGFVEALLRFLGSAVDDNNAAAQDSGAMALFNLAVNNNRNKELMLTSGVIRLLEKMISSAESHGSATALYLNLSCLDEAKSVIGSSQAVPFLVQLLQKEIETQCKLDALHALYNLSTYSPNIPALLSSNIIKSLQGLLASTGENLWIEKSLAVLLNLASSQEGKDEAVSSQGMISSLATVLDMGDTTEQEQAVSCLLILCNGRESCIQMVLQEGVIPSLVSISVNGTPRGREKSQKLLMLFREERQQRDQPSSNRDEPPQKEPARKSLSAPLSVHGSTPASASVQDYEPRVLSKSMSRRKSMARPFSFFWK-KSYSVRE 782
BLAST of rna-KK1_019888 vs. DB:Swiss
Match: PUB45_ARATH (U-box domain-containing protein 45 OS=Arabidopsis thaliana OX=3702 GN=PUB45 PE=1 SV=1) HSP 1 Score: 975.696 bits (2521), Expect = 0.000e+0 Identity = 507/773 (65.59%), Postives = 607/773 (78.53%), Query Frame = 1 Query: 1 MDVAELEENLFAAGDAKLHGEMCKCLSAIYCKILSLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLKRVEDIVPQSIGCQIDEIVNELASTVFALDPIEKQVGDDLIALLQQGRKFSDSNDCNELECFHLTATRIGITSSRAALTERRCLKKLIDRARAEEDKRKESIIAFLLHLMRKYSKLFRSEFSDDNDSQGST--PCSPT-----DGIPGGHFDRQLSKLSSFNFKP--NNRKSGQMLLPPEELRCPISLQLMNDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQKLSHLSLTPNYCVKGLVASWCEQNGVPIPEGPPESLDYHYWRLALSDSESTNSRSVNSVGSCKLKSVKVVPVXXXXXXXXXXXXXXXXXXXXXXGNEQYLGFLNFLTEGNNWKRKCKVVEQLRRVLRDDEEARIFMGANGFVEAFMQFLQSAMHEGDVMALDNGAMALFNLAVNNNRNKEIMISAGILSLLEEMNSKSSSYGCAAALYLNLSCLEEAKRVIGTSQAVQFLIQILHAETEVLCKLDSLHALYNLSTVPDNIPNLLSSGIVNGLQTLFVSQGDSTWTEKCIAVLINLAVSQEGREEIMLAPGLISALASTLDTGEPLEQEQAASCLLILCNRSEKCCELVLQEGVIPALVSISVNGTSRGREKSQKLLMLFREQRQREHS---------AAKTDEGESESSDLSMLPETKPLCKSISRRKAVGKAFSFLWKSKSYSVSQC 2265 MDV E+EEN FA GDAKLHG+MC LS IYCKI+S+FPSLEAARPRSKSGIQALCSLHV LEK KN+L+HC+E SKLYLAITGDSV+LKFEKAK +L DSL+RVEDIV QSIG Q+ EI+ EL +T F+LDP EK++GD +I LLQQG F S+D NELE FH ATR+GITSSRAALTERRCLKKLI+RAR E+DKRKESI+A+LLHLMRKYSKLFRSE DDNDSQGS+ PCSPT D G FDRQLSKLSSFNF+ NNR+S QM +PPEELRCPISLQLM DPVIIASGQTYER+CIEKWF DGHNTCPKT Q+LSHL LTPNYCVK L++SWCEQNGV +P+GPPESLD +YWRLALS SEST++RS VGSCKLK VKVVP+EESG ++ E+ L LT+ + ++KC+VVEQ+R +L+DDEEARI MG NG VEA +QFL SA++E + A GAMALFNLAV+NNRNKE+M+++GI+ LLEEM S+G A+YLNLSCLEEAK VIG+S AV F++ +L ETEV CK+D+LH+L++LST P NIP LLS+ +VN LQ+L +S + WTEK +AVL+NL +++ G++E++ AP L+S L + LDTGEP EQEQA S LLILCN SE C E+VLQEGVIP+LVSISVNGT RGRE++QKLL LFRE RQR+ + ++G S +S + + ETKP CKS SR+K +G+AFSFLWKSKS+SV QC Sbjct: 1 MDVNEVEENFFAPGDAKLHGKMCNALSVIYCKIMSIFPSLEAARPRSKSGIQALCSLHVVLEKVKNILRHCTESSKLYLAITGDSVVLKFEKAKSSLTDSLRRVEDIVQQSIGSQLLEILMELENTEFSLDPAEKEIGDQIIGLLQQGGNFESSSDNNELEVFHQAATRLGITSSRAALTERRCLKKLIERARMEDDKRKESIVAYLLHLMRKYSKLFRSEIWDDNDSQGSSSLPCSPTIQGSIDDAHGRAFDRQLSKLSSFNFRSCNNNRRSSQMSVPPEELRCPISLQLMYDPVIIASGQTYERICIEKWFSDGHNTCPKTHQQLSHLCLTPNYCVKALISSWCEQNGVQVPDGPPESLDLNYWRLALSVSESTDTRSAKRVGSCKLKDVKVVPLEESGTIKEEACESEYQEDQVTLV-ERCTELLTTLTDVDTLRKKCRVVEQIRVLLKDDEEARILMGENGCVEALLQFLGSALNENNASAQKVGAMALFNLAVDNNRNKELMLASGIIPLLEEMLCNPHSHGSVTAIYLNLSCLEEAKPVIGSSLAVPFMVNLLWTETEVQCKVDALHSLFHLSTYPPNIPCLLSADLVNALQSLTISD-EQRWTEKSLAVLLNLVLNEAGKDEMVSAPSLVSNLCTILDTGEPNEQEQAVSLLLILCNHSEICSEMVLQEGVIPSLVSISVNGTQRGRERAQKLLTLFRELRQRDQTHLTEPQHTEVTSPEDGFSVAS--AAVTETKPQCKSASRKK-MGRAFSFLWKSKSFSVYQC 768
BLAST of rna-KK1_019888 vs. DB:Swiss
Match: PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 7.841e-49 Identity = 172/670 (25.67%), Postives = 314/670 (46.87%), Query Frame = 1 Query: 160 LCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLKRV---EDIVPQSIGCQIDEIVNELASTVFALDPIEKQVGDDLIALLQQGRKFSDSNDCNELE-CFHLTATRIGITSSRAALTERRCLKKLIDRARAEEDKRKESIIAFLLHLMRKYSKLFRSEFSDDNDSQGSTPCSPTDGIPGGHFDRQLSKLSSFNFKPNNRKSGQMLLPPEELRCPISLQLMNDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQKLSHLSLTPNYCVKGLVASWCEQNGVPIPEGPPESLDYHYWRLALSDSESTNSRSVNSVGSCKLKSVKVVPVXXXXXXXXXXXXXXXXXXXXXXGNEQYLGFLNFLTEGNNWKRKCKVVEQLRRVLRDDEEARIFMGANGFVEAFMQFLQSAMHEGDVMALDNGAMALFNLAVNNNRNKEIMISAGILSLLEEMNSKSS--SYGCAAALYLNLSCLEEAKRVIGTSQAVQFLIQILHAETEVLCKLDSLHALYNLSTVPDNIPNLLSSGIVNGLQTLFVSQGDSTWTEKCIAVLINLAVSQEGREEIMLAPGLISALASTLDTGEPLEQEQAASCLLILCNRSEKCCELVLQEGVIPALVSISVNGTSRGREKSQKLL-MLFREQRQREHSAAKTDEGESESS 2148 L +L A+ AK+ L+ CS+ SK+YL + + V K + LE SL ++ E + + Q++ ++++ +D + ++ +DL +L + S+D + + A ++ + E L +++ + + + E + A +L +++ + + DDN + +++ S N + + S ++ + P++ RCPISL++M DPVI++SGQTYER CIEKW GH+TCPKTQQ L+ +LTPNY ++ L+A WCE N + P+ PP SL R V+S S ++ K+ E + L + GN ++ E +R + + + + R+ + G + + L + D ++ AL NL++ N NK ++SAG + + ++ K S + AAA +LS ++E K IG A+ L+ +L+ T+ K D+ AL+NL N + +G++ L L G S ++ +A+L L+ EG+ I+ + + +L + TG P +E AA+ L+ LC+ + + G++ L+ ++ NGT RG+ K+ +LL + R Q++ +A E E+E + Sbjct: 65 LMNLKEAMCSAKDYLKFCSQGSKIYLVMEREQVTSKLMEVSVKLEQSLSQIPYEELDISDEVREQVELVLSQFRRAKGRVDVSDDELYEDLQSLCNK------SSDVDAYQPVLERVAKKLHLMEIPDLAQESVALHEMVASSGGDVGENIEEM-AMVLKMIKDFV-----QTEDDNGEE-----------------QKVGVNSRSNGQTSTAASQKIPVIPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTLTPNYVLRSLIAQWCEANDIEPPK-PPSSL---------------RPRKVSSF-SSPAEANKI---------------------------EDLMWRLAY---GNPEDQRSAAGE-IRLLAKRNADNRVAIAEAGAIPLLVGLLSTP----DSRIQEHSVTALLNLSICEN-NKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQ-RGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPG-SGMVDEALAILAILSSHPEGK-AIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQLLERISRLAEQQKETAVSQPEEEAEPT 649
BLAST of rna-KK1_019888 vs. DB:Swiss
Match: PUB12_ORYSJ (U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=2 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 2.605e-46 Identity = 131/429 (30.54%), Postives = 198/429 (46.15%), Query Frame = 1 Query: 811 PEELRCPISLQLMNDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQKLSHLSLTPNYCVKGLVASWCEQNGVPIPEGPPESLDYHYWRLALSDSESTNSRSVNSVGSCKLKSVKVVPVXXXXXXXXXXXXXXXXXXXXXXGNEQYLGFLNFLTEGNNWKRKCKVVEQLRRVLRDDEEARIFMGANGFVEAFMQFLQSAMHEGDVMALDNGAMALFNLAVNNNRNKEIMISAGILSLLEEMNSKS-SSYGCAAALYLNLSCLEEAKRVIGTSQAVQFLIQILHAETEVLCKLDSLHALYNLSTVPDNIPNLLSSGIVNGLQTLFVSQGDSTWTEKCIAVLINLAVSQEGREEIMLAPG-LISALASTLDTGEPLEQEQAASCLLILCNRSEKCCELVLQEGVIPALVSISVNGTSRGREKSQKLLMLFRE 2091 P+E RCPISL+LM DPVI++SGQTYER CI+KW GH TCPKTQQ LSH SLTPN+ +K L++ WCE NG+ +P+ NSR + S +V +N L GN +++ E +R + + + RI + G + + L S+ D ++ AL NL+++ N I+ S I ++E + + S + AAA +LS ++E K IG + A+ LI +L + K D+ A++NL N + +GIV L V E +++L LA + EG+ I++A I L + TG P +E AA+ L +LC+ + GV AL +S GT R + K+ +L L + Sbjct: 229 PDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVLKSLISQWCEANGIELPKN------------------KQNSRDKKAAKSSDYDHAGLV------------------------------SLMNRLRSGNQDEQRAAAGE-IRLLAKRNVNNRICIAEAGAIPLLVNLLSSS----DPRTQEHAVTALLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLL-CDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDE-ALSLLSILAGNPEGK--IVIARSEPIPPLVEVIKTGSPRNRENAAAILWLLCSADTEQTLAAKAAGVEDALKELSETGTDRAKRKASSILELMHQ 600
BLAST of rna-KK1_019888 vs. DB:Swiss
Match: PUB10_ARATH (U-box domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=PUB10 PE=2 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 4.894e-42 Identity = 126/458 (27.51%), Postives = 215/458 (46.94%), Query Frame = 1 Query: 736 DRQLSKLSSFNFKPNNRKSGQMLLPPEELRCPISLQLMNDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQKLSHLSLTPNYCVKGLVASWCEQNGVPIPEGPPESLDYHYWRLALSDSESTNSRSVNSVGSCKLKSVKVVPVXXXXXXXXXXXXXXXXXXXXXXGNEQYLGFLNFLTEGNNWKRKCKVVEQLRRVLRDDEEARIFMGANGFVEAFMQFLQSAMHEGDVMALDNGAMALFNLAVNNNRNKEIMISAGILSLLEEMNSKS-SSYGCAAALYLNLSCLEEAKRVIGTSQAVQFLIQILHAETEVLCKLDSLHALYNLSTVPDNIPNLLSSGIVNGLQTLFVSQGDSTWTEKCIAVLINLAVSQEGREEIMLAPGLISALASTLDTGEPLEQEQAASCLLILCNR-SEKCCELVLQEGVIPALVSISVNGTSRGREKSQKLLMLFREQRQR 2103 D +L K + N +++KS + +P E+ CPISL+LM DP I+++GQTYER I++W G+ +CPKTQQKL + +LTPNY ++ L++ WC ++ + P G N R+ NS GS + G+ + L + + + V ++R + + + RI + G + ++ L S +GD +N + NL++ + + IM++ + S++ + + S + AAA +LS +E K +IG S A+ L+ +L + V K D+ AL+NL N + +GIV L + ++ + +L LA +Q + I+ A I L L +P +E AA+ LL LC R +EK + V+P L+ +S +GT R + K+ LL L R+ ++ Sbjct: 221 DERLEKAVTEN-SDDSQKSDNLTIP-EDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLENFTLTPNYVLRSLISQWCTKHNIEQPGG------------------YMNGRTKNSDGSFR----------------------------DLSGDMSAIRALVCKLSSQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTS---DGDTETQENAVTCILNLSIYEHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIMALVDLLQYGS-VRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMADEALTILSVLASNQVAKTAILRANA-IPPLIDCLQKDQPRNRENAAAILLCLCKRDTEKLISIGRLGAVVP-LMELSRDGTERAKRKANSLLELLRKSSRK 624
BLAST of rna-KK1_019888 vs. DB:Swiss
Match: PUB11_ARATH (U-box domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=PUB11 PE=2 SV=2) HSP 1 Score: 165.622 bits (418), Expect = 6.556e-42 Identity = 123/438 (28.08%), Postives = 205/438 (46.80%), Query Frame = 1 Query: 781 NRKSGQMLLPPEELRCPISLQLMNDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQKLSHLSLTPNYCVKGLVASWCEQNGVPIPEGPPESLDYHYWRLALSDSESTNSRSVNSVGSCKLKSVKVVPVXXXXXXXXXXXXXXXXXXXXXXGNEQYLGFLNFLTEGNNWKRKCKVVEQLRRVLRDDEEARIFMGANGFVEAFMQFLQSAMHEGDVMALDNGAMALFNLAVNNNRNKEIMISAGILSLLEEMNSKS-SSYGCAAALYLNLSCLEEAKRVIGTSQAVQFLIQILHAETEVLCKLDSLHALYNLSTVPDNIPNLLSSGIVNGLQTLFVSQGDSTWTEKCIAVLINLAVSQEGREEIMLAPGLISALASTLDTGEPLEQEQAASCLLILCNRSEKCCELVLQEGVIPALVSISVNGTSRGREKSQKLLMLFRE 2091 ++KS ++ +P + L CP+SL+LM DPVI+A+GQTYER I++W G+ TCPKTQQKL + +LTPNY ++ L++ WC ++ + P G N R+ NS +++ + L+ + R+ V E +R + + + RI + G + + L S DV +N + NL++ N + IM + + S+++ + + + + AAA +LS +E K +IG S A+ L+ +L T K D+ AL+NL N + +GIV L + ++ + +L LA +Q+ + I+ A L AL L T + +E AA+ LL LC R + + + G + L+ +S NGT RG+ K+ LL L R+ Sbjct: 233 SKKSDKLTIPVDFL-CPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFTLTPNYVLRSLISRWCAEHNIEQPAG------------------YINGRTKNSGDMSVIRA-----------------------------------LVQRLSSRSTEDRRNAVSE-IRSLSKRSTDNRILIAEAGAIPVLVNLLTSE----DVATQENAITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGGSGAIPALVDLLENGTP-RGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKSAIVKANTL-PALIGILQTDQTRNRENAAAILLSLCKRDTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLRK 609
BLAST of rna-KK1_019888 vs. DB:Swiss
Match: PUB14_ARATH (U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 1.037e-41 Identity = 130/429 (30.30%), Postives = 200/429 (46.62%), Query Frame = 1 Query: 811 PEELRCPISLQLMNDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQKLSHLSLTPNYCVKGLVASWCEQNGVPIPEGPPESLDYHYWRLALSDSESTNSRSVNSVGSCKLKSVKVVPVXXXXXXXXXXXXXXXXXXXXXXGNEQYLGFLNFLTEGNNWKRKCKVVEQLRRVLRDDEEARIFMGANGFVEAFMQFLQSAMHEGDVMALDNGAMALFNLAVNNNRNKEIMISAGILSLLEEM--NSKSSSYGCAAALYLNLSCLEEAKRVIGTSQAVQFLIQILHAETEVLCKLDSLHALYNLSTVPDNIPNLLSSGIVNGLQTLFVSQGDSTWTEKCIAVLINLAVSQEGREEIMLAPGLISALASTLDTGEPLEQEQAASCLLILCNRSEKCCELVLQEGVIPALVSISVNGTSRGREKSQKLLMLFRE 2091 PE RCPISL+LM DPVI+++GQTYER I+KW GH TCPK+Q+ L H LTPNY +K L+A WCE NG+ +P+ GSC+ + S+ + L L L G +++ E LR + + + + R+ + G + ++ L S D ++ AL NL++N NK ++ AG ++ + E+ N + AAA +LS ++E K IG + A+Q LI +L T K D+ A++NL N + GIV+ L L G ++ +A+L L+ +QEG+ I A I L + TG P +E AA+ L LC + + + + G AL ++ NGT R + K+ LL L ++ Sbjct: 249 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIELPQNQ---------------------------GSCRTTKIG-------------------GSSSSDCDRTFVLSLLEKLANGTTEQQRAAAGE-LRLLAKRNVDNRVCIAEAGAIPLLVELLSSP----DPRTQEHSVTALLNLSINEG-NKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGTR-RGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGG-MVDEALAILAILSTNQEGKTAIAEAES-IPVLVEIIRTGSPRNRENAAAILWYLCIGNIERLNVAREVGADVALKELTENGTDRAKRKAASLLELIQQ 622
BLAST of rna-KK1_019888 vs. DB:Swiss
Match: PUB1_MEDTR (U-box domain-containing protein 1 OS=Medicago truncatula OX=3880 GN=PUB1 PE=1 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 4.112e-36 Identity = 181/696 (26.01%), Postives = 309/696 (44.40%), Query Frame = 1 Query: 103 SLFPSL-EAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLKRVEDIVP-------QSIGCQIDEIVNELASTV---FALDPIEKQVGDDLIALLQQG----------RKFSDSNDCNELECFHLTATRIGITSSRAALTERRCLKKLIDRARAEEDKRKESIIAFLLHLMRKYSKLFRSEFSDDNDSQGSTPCSPTDGIPGGHFDRQLSKLSSFNFKPNNRKSGQMLLP--PEELRCPISLQLMNDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQKLSHLSLTPNYCVKGLVASWCEQNGVPIPEGPPESLDYHYWRLALSDSESTNSRSVNSVGSCKLK--SVKVVPVXXXXXXXXXXXXXXXXXXXXXXGNEQYLGFLNFLTEGNNWKRKCKVVEQLRRVLRDDEEARIFMGANGFVEAFMQFL---QSAMHEGDVMALDNGAMALFNLAVNNNRNKEIMISAG----ILSLLEEMNSKSSSYGCAAALYLNLSCLEEAKRVIG-TSQAVQFLIQILHAETEVLCKLDSLHALYNLSTVPDNIPNLLSSGIVNGLQTLFVSQGDSTWTEKCIAVLINLAVSQEGREEIMLAPGLISALASTLDTGEPLEQEQAASCLLILCNRSEKCC--ELVLQEGVIPALVSISVNGTSRGREKSQKLLMLF 2085 SLF + E+ P S I + + + K ++Q C++ S L+ I D + +F L + R DI+P Q I Q+D ++++ + V +DP E Q ++L ++ + + F D E+ C IG+ + + E + KL A+ + +++ + +LM S F +D +S+ P S F SK+ + ++ S M+ P+E RCPISL LM DPVI++SG TY+R+ I +W GH+TCPK+ Q+L H +L PNY +K LV WC +N V + E ++ + S N +++ + K +VK+ E +G L T + +R+ ++R + + + R + G + + L S + E V AL N L++ +N NK ++++AG I+ +LE + + AAA+Y +LS +++ K IG +S+A+ L+ +L E ++ K D+ AL+NL+ N +++ SG V L L + + T+ +AVL L EG EEI + L+ L L G +E + + LL LC + L+ IP+L S++ +G+ R R K+ LL L Sbjct: 57 SLFEEIQESDSPLPPSSILCFIEIFSVITRVKVLIQECTDGSSLWSLIQLDFISNQF----FVLVKEMGRALDILPLNLLNVAQDIKEQVD-LLHKQSKRVELELFIDPREVQRRENLFEVMSKNCLQNKKTNNNKGFIDFVKVEEIMC------SIGLRTLSDYVEE---ISKLEVEAQNQAGTGGLIVVSNINNLMSLVSYTKSMVFRNDGESEECKPIS--------MFLYNKSKIHDNDSSSSSSFSQSMMTVNIPDEFRCPISLDLMRDPVIVSSGHTYDRISIAEWINSGHHTCPKSGQRLIHTALIPNYALKSLVHQWCYENNVKMNEAITKNNNS-------SSKRHKNENAIDHISENKASKDAVKMTA-------------------------EFLVGKLA--TGSTDIQRQSAY--EIRLLAKTGMDNRRIIAEVGAIPFLVTLLVSKDSRIQEHVVTALFN-------LSIYDN-NKILIMAAGAIDNIVEVLEFGKTMEARENAAAAIY-SLSMIDDCKVQIGASSRAIPALVGLLK-EGTIIGKRDAATALFNLAVYNPNKLSIVKSGAVTLLVELLMDD-KAGITDDSLAVLAVLLGCSEGLEEIKNSKSLVPLLIDLLRFGSVKGKENSITLLLGLCKEEGELVAMRLLANPRSIPSLQSLAADGSLRARRKADALLRLL 683
BLAST of rna-KK1_019888 vs. DB:Swiss
Match: PUB12_ARATH (U-box domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=PUB12 PE=2 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 1.233e-31 Identity = 83/291 (28.52%), Postives = 135/291 (46.39%), Query Frame = 1 Query: 199 VLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLKRVEDIVPQSIGCQIDEIVNELASTVFAL---------DPIEKQVGDDLIALLQQGRKFSDSNDCNELECFHLTATRIGITSSRAALTERRCLKKLIDRARAEEDKRKESIIAFLLHLMRKYSKLFRSEFSDDNDSQGSTPCSPTDGIPGGHFDRQLSKLSSFNFKPNNRKSGQMLLPPEELRCPISLQLMNDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQKLSHLSLTPNYCVKGLVASWCEQNGVPIPEGP 1044 +L S SK+YL + D V++KF+K LE +L I+P DE+ ++ + L D + ++ D+++L +S E + A ++ + + E L ++ + ++ ++ +L ++ + + + D P +P D + ML+PPEE RCPISL+LM DPVI++SGQTYER CI+KW GH TCPKTQ+ L+ +TPNY ++ L+A WCE NG+ P+ P Sbjct: 78 LLSFVSHVSKIYLVLERDQVMVKFQKVTSLLEQALS----IIPYENLEISDELKEQVELVLVQLRRSLGKRGGDVYDDELYKDVLSL------YSGRGSVMESDMVRRVAEKLQLMTITDLTQESLALLDMVSSSGGDDPGESFEKMSMVLKKIKDFVQTYNPNLDD-------APLRLKSSLPKSRDDDR-----------------DMLIPPEEFRCPISLELMTDPVIVSSGQTYERECIKKWLEGGHLTCPKTQETLTSDIMTPNYVLRSLIAQWCESNGIEPPKRP 334 HSP 2 Score: 77.7962 bits (190), Expect = 2.067e-13 Identity = 65/273 (23.81%), Postives = 137/273 (50.18%), Query Frame = 1 Query: 1309 QLRRVLRDDEEARIFMGANGFVEAFMQFLQSAMHEGDVMALDNGAMALFNLAVNNNRNKEIMISAGILSLLEEMNSKSS--SYGCAAALYLNLSCLEEAKRVIGTSQAVQFLIQILHAETEVLCKLDSLHALYNLSTVPDNIPNLLSSGIVNGLQTLFVSQGDSTWTEKCIAVLINLAVSQEGREEIMLAPGLISALASTLDTGEPLEQEQAASCLLILCNRSEKCCELVLQEGVIPALVSISVNGTSRGREKSQKLLMLFRE--QRQREHSA 2115 ++R + + + R+ + A+G + + L + D ++ ++ NL++ +I+ S+G + + + K S + AAA +LS ++E K IG + A+ L+ +L +E K D+ AL+NL N + +G+V L L ++ +S ++ +++L L+ +G+ E+ A + L + +G P +E +A+ L+ LC+ +++ + G++ L+ ++ NGT RG+ K+ +LL F +Q++HS Sbjct: 378 EIRLLAKQNNHNRVAIAASGAIPLLVNLLTIS---NDSRTQEHAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDENKVTIGAAGAIPPLVTLL-SEGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLL-TEPESGMVDESLSILAILSSHPDGKSEVGAADA-VPVLVDFIRSGSPRNKENSAAVLVHLCSWNQQHLIEAQKLGIMDLLIEMAENGTDRGKRKAAQLLNRFSRFNDQQKQHSG 644 The following BLAST results are available for this feature:
BLAST of rna-KK1_019888 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_019888_Cc_Asha_v1.0 ID=rna-KK1_019888_Cc_Asha_v1.0; Name=rna-KK1_019888; organism=Cajanus cajan; type=mRNA; length=2268bpback to top protein sequence of rna-KK1_019888_Cc_Asha_v1.0 >rna-KK1_019888_Cc_Asha_v1.0 ID=rna-KK1_019888_Cc_Asha_v1.0; Name=rna-KK1_019888_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=755bpback to top mRNA from alignment at Chr_1-CM003603.1:1560356..1564234+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_019888_Cc_Asha_v1.0 ID=rna-KK1_019888_Cc_Asha_v1.0; Name=rna-KK1_019888; organism=Cajanus cajan; type=mRNA; length=3879bp; location=Sequence derived from: Chr_1-CM003603.1:1560356..1564234+ (Cajanus cajanback to top Coding sequence (CDS) from alignment at Chr_1-CM003603.1:1560356..1564234+ >rna-KK1_019888_Cc_Asha_v1.0 ID=rna-KK1_019888_Cc_Asha_v1.0; Name=rna-KK1_019888; organism=Cajanus cajan; type=CDS; length=4536bp; location=Sequence derived from: Chr_1-CM003603.1:1560356..1564234+ (Cajanus cajanback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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