rna-KK1_019886

Transcript Overview
Namerna-KK1_019886
Unique Namerna-KK1_019886_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length1143
ProductNucleoporin p54
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_1-CM003603.1supercontigChr_1-CM003603.1:1538910..1542613 +Cajanus cajan Asha genome v1.0n/a
Chr_1-CM003603.1supercontigChr_1-CM003603.1:1538910..1542613 +Cajanus cajan Asha genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cccrR0011Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cccrR0043Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccpsR022Pisum sativum Cameor genome v1aPisum sativum
ccpsR024Pisum sativum Cameor genome v1aPisum sativum
ccpsR033Pisum sativum Cameor genome v1aPisum sativum
ccccR001Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvR0004Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0019Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuR0003Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0016Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caiccL0518Cicer arietinum ICC 4958 genome v2Cicer arietinum
caiccL0673Cicer arietinum ICC 4958 genome v2Cicer arietinum
caccL0156Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL0552Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL0721Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccL0005Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0256Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0259Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0379Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0433Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0833Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0912Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cctifR0010Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0036Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR0010Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0039Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0014Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvssR0010Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvuaR0003Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvssR0042Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvuaR0020Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canccL0553Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL0728Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjccL0331Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL0697Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carccL0594Cicer arietinum
carccL0777Cicer arietinum
ccccaR0000Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0054Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR0009Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0042Vigna umbellata FF25 genome v1.0Vigna umbellata

Orthologs
Gene/TranscriptAssemblySpecies
Phvul.001G260500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_014637741.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg53567.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat5g094800.1Pisum sativum Cameor genome v1aPisum sativum
rna-XM_004502249.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
evm.model.Chr01.2312.1.6211317b.1.62122c08Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Hedin2.R1.2g111960.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigun01g246000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Ca_13720.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Cr_13029.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vfaba.Tiffany.R1.2g091960.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Ca_11334Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vum_04G03215.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Va03G085170.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Cc_v2.0_00098.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_019886gene-KK1_019886_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_019886rna-KK1_019886_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_019886_Cc_Asha_v1.0rna-KK1_019886_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1538910..1539308rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1538910..1539308Cajanus cajanexon
rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1538910..1539308rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1538910..1539308Cajanus cajanexon
rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1539396..1539449rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1539396..1539449Cajanus cajanexon
rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1539396..1539449rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1539396..1539449Cajanus cajanexon
rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1540152..1540211rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1540152..1540211Cajanus cajanexon
rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1540152..1540211rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1540152..1540211Cajanus cajanexon
rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1540318..1540428rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1540318..1540428Cajanus cajanexon
rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1540318..1540428rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1540318..1540428Cajanus cajanexon
rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1541496..1541561rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1541496..1541561Cajanus cajanexon
rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1541496..1541561rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1541496..1541561Cajanus cajanexon
rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1541666..1541752rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1541666..1541752Cajanus cajanexon
rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1541666..1541752rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1541666..1541752Cajanus cajanexon
rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1542014..1542115rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1542014..1542115Cajanus cajanexon
rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1542014..1542115rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1542014..1542115Cajanus cajanexon
rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1542196..1542345rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1542196..1542345Cajanus cajanexon
rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1542196..1542345rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1542196..1542345Cajanus cajanexon
rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1542500..1542613rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1542500..1542613Cajanus cajanexon
rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1542500..1542613rna-KK1_019886_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1542500..1542613Cajanus cajanexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1538910..1539308rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1538910..1539308Cajanus cajanCDS
rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1538910..1539308rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1538910..1539308Cajanus cajanCDS
rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1539396..1539449rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1539396..1539449Cajanus cajanCDS
rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1539396..1539449rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1539396..1539449Cajanus cajanCDS
rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1540152..1540211rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1540152..1540211Cajanus cajanCDS
rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1540152..1540211rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1540152..1540211Cajanus cajanCDS
rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1540318..1540428rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1540318..1540428Cajanus cajanCDS
rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1540318..1540428rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1540318..1540428Cajanus cajanCDS
rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1541496..1541561rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1541496..1541561Cajanus cajanCDS
rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1541496..1541561rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1541496..1541561Cajanus cajanCDS
rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1541666..1541752rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1541666..1541752Cajanus cajanCDS
rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1541666..1541752rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1541666..1541752Cajanus cajanCDS
rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1542014..1542115rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1542014..1542115Cajanus cajanCDS
rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1542014..1542115rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1542014..1542115Cajanus cajanCDS
rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1542196..1542345rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1542196..1542345Cajanus cajanCDS
rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1542196..1542345rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1542196..1542345Cajanus cajanCDS
rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1542500..1542613rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1542500..1542613Cajanus cajanCDS
rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1542500..1542613rna-KK1_019886_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1542500..1542613Cajanus cajanCDS


Homology
[Close]
BLAST of rna-KK1_019886 vs. DB:Swiss
Match: NUP54_ARATH (Nuclear pore complex protein NUP54 OS=Arabidopsis thaliana OX=3702 GN=NUP54 PE=1 SV=1)

HSP 1 Score: 475.707 bits (1223), Expect = 2.582e-167
Identity = 258/375 (68.80%), Postives = 300/375 (80.00%), Query Frame = 1 
Query:   58 FGTPSSTPAFGTPSFATP---SSTPAFGTPSSTPAFGASSTPAFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XNAFGFQ----NSLAPPQPSPFSNAQLTTQMANVAPVPFSLADRDVQAILDAYKEDPGNPKYAFKHLLFSVTEPQFRVKPAGVSDIMWAEAMGKLEGMESADRERLWPQLAQGFKDLSQRLKIQDEVIVSDAERLRVTQSNVKMLQRHFQADTLPWIQRLKQKEQILQQRLLRVMRIVEALEGKGCRIPLTKGEAELAEKLATITRQLKGSGSELSRRVQNLLTVSRGKANSNGFGGSVYLPGSTKIHEQSLTDLQEVLQQQMEAIGRLGGVLKRDIRDMEIMMHEDTGMEM 1134
            FGTPSS+P+FGTPS +TP   +S+PAFGTPS+TPAFG  S P+F S  F +   S P   QQ    QQQQQ Q          S+ FGFQ    N+    Q +PF NAQLTTQMA VAP+P+SLADRDVQAI++AYKEDP NPKYAF+HLLFSVTEPQ+RVKPA VSDIMWAEAM KLEGM+S +RERLWPQL QGFKDLSQRLK+QDEV+VSD +R++ TQSNVKMLQRH QA T P I+RL+QKEQ LQ+R+LRVMRI+E LEGKG R+PLTKGEAEL+EKL  ITRQ+KG G+ELSRRVQ+L T+SR +ANS   G S+YLPGSTKI EQSL D+QEVLQQ+ EAIGRLG VLKRD+RDMEIM+ EDT M +
Sbjct:    2 FGTPSSSPSFGTPS-STPAFGTSSPAFGTPSATPAFGTPSNPSFSSGGFGSSLFSSPFSSQQPQQQQQQQQQQQPSSLFQQQPSSNFGFQSPFNNTAQQQQQTPFPNAQLTTQMAPVAPIPYSLADRDVQAIIEAYKEDPTNPKYAFQHLLFSVTEPQYRVKPAAVSDIMWAEAMSKLEGMDSTERERLWPQLVQGFKDLSQRLKLQDEVLVSDRDRIKTTQSNVKMLQRHLQASTFPSIERLRQKEQSLQRRMLRVMRIIEGLEGKGFRLPLTKGEAELSEKLTAITRQVKGPGAELSRRVQSLQTISRAQANSIAAGSSLYLPGSTKIDEQSLIDMQEVLQQETEAIGRLGNVLKRDMRDMEIMVAEDTEMAL 375
[Close]
BLAST of rna-KK1_019886 vs. DB:Swiss
Match: NUP54_MOUSE (Nuclear pore complex protein Nup54 OS=Mus musculus OX=10090 GN=Nup54 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.332e-12
Identity = 60/206 (29.13%), Postives = 104/206 (50.49%), Query Frame = 1 
Query:  496 PAGVSDIMWAEAMGKLEGMESADRERLWPQLAQGFKDLSQRLKIQDEVIVSDAERLRVTQSNVKMLQRHFQADTLPWIQRLKQKEQILQQRLLRVMRIVEALEGKGCRIPLTKGEAELAEKLATITRQLKGSGSELSRRVQNLLTVSRGKANSNGFGGSVYLPGSTKIHEQSLTDLQEVLQQQMEAIGRLGGVLKRDIRDMEIMMH 1113
            PAGV  I+W +A      +++ D E+L P    GFK+L +RLK+QD++      RL +   ++  LQ++ Q  T+  I + K+K   L  R L+V+   E     G  I     E +L  +L TI  +L    ++   R+  L++  R +   N F G+V       I    L ++++ L+QQ E +  L  ++K D+ D++++ H
Sbjct:  304 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDISELQKN-QTTTMAKIAQYKRKLMELSHRTLQVLIKQEIQRKSGYAI--QADEEQLRVQLDTIQGELNAP-TQFKGRLNELMSQIRMQ---NHF-GAVKSEEKYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIKLVEH 496
[Close]
BLAST of rna-KK1_019886 vs. DB:Swiss
Match: NUP54_RAT (Nuclear pore complex protein Nup54 OS=Rattus norvegicus OX=10116 GN=Nup54 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.953e-12
Identity = 60/206 (29.13%), Postives = 104/206 (50.49%), Query Frame = 1 
Query:  496 PAGVSDIMWAEAMGKLEGMESADRERLWPQLAQGFKDLSQRLKIQDEVIVSDAERLRVTQSNVKMLQRHFQADTLPWIQRLKQKEQILQQRLLRVMRIVEALEGKGCRIPLTKGEAELAEKLATITRQLKGSGSELSRRVQNLLTVSRGKANSNGFGGSVYLPGSTKIHEQSLTDLQEVLQQQMEAIGRLGGVLKRDIRDMEIMMH 1113
            PAGV  I+W +A      +++ D E+L P    GFK+L +RLK+QD++      RL +   ++  LQ++ Q  T+  I + K+K   L  R L+V+   E     G  I     E +L  +L TI  +L    ++   R+  L++  R +   N F G+V       I    L ++++ L+QQ E +  L  ++K D+ D++++ H
Sbjct:  304 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDISELQKN-QTTTMAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQAE--EEQLRVQLDTIQGELNAP-TQFKGRLNELMSQIRMQ---NHF-GAVKSEEKYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIKLVEH 496
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BLAST of rna-KK1_019886 vs. DB:Swiss
Match: NUP54_HUMAN (Nucleoporin p54 OS=Homo sapiens OX=9606 GN=NUP54 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.657e-11
Identity = 59/206 (28.64%), Postives = 105/206 (50.97%), Query Frame = 1 
Query:  496 PAGVSDIMWAEAMGKLEGMESADRERLWPQLAQGFKDLSQRLKIQDEVIVSDAERLRVTQSNVKMLQRHFQADTLPWIQRLKQKEQILQQRLLRVMRIVEALEGKGCRIPLTKGEAELAEKLATITRQLKGSGSELSRRVQNLLTVSRGKANSNGFGGSVYLPGSTKIHEQSLTDLQEVLQQQMEAIGRLGGVLKRDIRDMEIMMH 1113
            PAGV  I+W +A      +++ D E+L P    GFK+L +RLK+QD++      RL +   ++  LQ++ Q  ++  I + K+K   L  R L+V+   E     G  I     E +L  +L TI  +L  + ++   R+  L++  R +   N F G+V       I    L ++++ L+QQ E +  L  ++K D+ D++++ H
Sbjct:  301 PAGVDPIIWEQA-----KVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDISELQKN-QTTSVAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAI--QADEEQLRVQLDTIQGEL-NAPTQFKGRLNELMSQIRMQ---NHF-GAVRSEERYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIKLVEH 493
The following BLAST results are available for this feature:
BLAST of rna-KK1_019886 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 4
Match NameE-valueIdentityDescription
NUP54_ARATH2.582e-16768.80Nuclear pore complex protein NUP54 OS=Arabidopsis ... [more]
NUP54_MOUSE3.332e-1229.13Nuclear pore complex protein Nup54 OS=Mus musculus... [more]
NUP54_RAT3.953e-1229.13Nuclear pore complex protein Nup54 OS=Rattus norve... [more]
NUP54_HUMAN1.657e-1128.64Nucleoporin p54 OS=Homo sapiens OX=9606 GN=NUP54 P... [more]
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InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025712Nucleoporin Nup54, alpha-helical domainPFAMPF13874Nup54coord: 165..309
e-value: 1.9E-30
score: 105.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..110

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_019886_Cc_Asha_v1.0 ID=rna-KK1_019886_Cc_Asha_v1.0; Name=rna-KK1_019886; organism=Cajanus cajan; type=mRNA; length=1143bp
ATGTTTGGCTCTGCGCAACCTTCTTCTCCTTTCGGCACTCCCTCTTCAAC
CCCCGCATTCGGCACACCTTCTTCCACACCTGCGTTCGGTACACCTTCCT
TCGCTACACCTTCTTCCACACCAGCGTTCGGTACACCGTCTTCTACACCT
GCGTTCGGTGCTTCTTCTACACCAGCGTTCGGTTCCTCCCTCTTCTCCAC
ACCCTTCTCTTCTCAACCGCAACAACAGCAACAAACGCCACTCTTTCAAC
AACAACAACAGCCACAACCTTCTAACGCTTTCGGTTTTCAAAACTCCCTC
GCGCCGCCGCAACCCTCTCCGTTCTCAAATGCTCAATTAACCACTCAGAT
GGCCAACGTGGCACCTGTTCCGTTCTCTCTCGCGGATCGCGATGTTCAGG
CTATCCTTGATGCTTACAAGGAAGATCCTGGAAACCCCAAGTACGCTTTT
AAGCATTTGTTGTTCAGTGTAACAGAACCGCAGTTTAGAGTGAAGCCTGC
TGGTGTGTCAGACATCATGTGGGCAGAGGCGATGGGTAAGCTTGAGGGTA
TGGAAAGTGCTGACAGAGAACGTCTGTGGCCACAACTTGCTCAGGGTTTT
AAGGATCTTTCACAACGTCTTAAGATACAAGATGAAGTCATTGTTTCTGA
TGCAGAGAGATTACGTGTAACCCAAAGCAATGTTAAAATGCTCCAGAGAC
ATTTTCAAGCTGATACTCTTCCGTGGATTCAAAGGCTGAAACAAAAAGAA
CAAATTCTACAGCAACGTCTTTTAAGAGTAATGAGAATAGTAGAGGCTTT
GGAGGGAAAAGGCTGCCGTATACCCTTAACAAAAGGGGAAGCTGAACTTG
CTGAGAAATTAGCGACAATAACCAGACAGCTGAAAGGATCTGGATCGGAA
TTGTCTAGAAGGGTACAAAATCTACTAACTGTATCTCGTGGTAAAGCGAA
CAGCAATGGATTTGGTGGCTCCGTTTATCTTCCGGGGTCAACCAAAATTC
ATGAACAGAGTCTTACTGACCTACAGGAGGTTTTACAGCAGCAGATGGAG
GCCATTGGAAGACTTGGCGGTGTTCTGAAGCGAGATATACGGGATATGGA
GATTATGATGCATGAGGACACAGGAATGGAAATGGGAATTTAA
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protein sequence of rna-KK1_019886_Cc_Asha_v1.0

>rna-KK1_019886_Cc_Asha_v1.0 ID=rna-KK1_019886_Cc_Asha_v1.0; Name=rna-KK1_019886_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=380bp
MFGSAQPSSPFGTPSSTPAFGTPSSTPAFGTPSFATPSSTPAFGTPSSTP
AFGASSTPAFGSSLFSTPFSSQPQQQQQTPLFQQQQQPQPSNAFGFQNSL
APPQPSPFSNAQLTTQMANVAPVPFSLADRDVQAILDAYKEDPGNPKYAF
KHLLFSVTEPQFRVKPAGVSDIMWAEAMGKLEGMESADRERLWPQLAQGF
KDLSQRLKIQDEVIVSDAERLRVTQSNVKMLQRHFQADTLPWIQRLKQKE
QILQQRLLRVMRIVEALEGKGCRIPLTKGEAELAEKLATITRQLKGSGSE
LSRRVQNLLTVSRGKANSNGFGGSVYLPGSTKIHEQSLTDLQEVLQQQME
AIGRLGGVLKRDIRDMEIMMHEDTGMEMGI
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mRNA from alignment at Chr_1-CM003603.1:1538910..1542613+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_019886_Cc_Asha_v1.0 ID=rna-KK1_019886_Cc_Asha_v1.0; Name=rna-KK1_019886; organism=Cajanus cajan; type=mRNA; length=3704bp; location=Sequence derived from: Chr_1-CM003603.1:1538910..1542613+ (Cajanus cajan
ATGTTTGGCTCTGCGCAACCTTCTTCTCCTTTCGGCACTCCCTCTTCAAC
CCCCGCATTCGGCACACCTTCTTCCACACCTGCGTTCGGTACACCTTCCT
TCGCTACACCTTCTTCCACACCAGCGTTCGGTACACCGTCTTCTACACCT
GCGTTCGGTGCTTCTTCTACACCAGCGTTCGGTTCCTCCCTCTTCTCCAC
ACCCTTCTCTTCTCAACCGCAACAACAGCAACAAACGCCACtctttcaac
aacaacaacagccaCAACCTTCTAACGCTTTCGGTTTTCAAAACTCCCTC
GCGCCGCCGCAACCCTCTCCGTTCTCAAATGCTCAATTAACCACTCAGAT
GGCCAACGTGGCACCTGTTCCGTTCTCTCTCGCGGATCGCGATgttcagg
ttttttttttttttttcttaatcatttttgttttcttttaattctttatt
gaATGATTTTGTGGGTTGTGTATGCTATCCAACTAGGCTATCCTTGATGC
TTACAAGGAAGATCCTGGAAACCCCAAGTACGCTTTTAAGGTACCCTCCT
CACTGTCTTCATTgaaaaaagattacaaaaatgtcaccttTGTGAAGTTC
TTGTGTATGATGTTAGCCTCGTTTGAGTTATGAGCAGAGTTAATATATAC
TCGGGTATGGATTTCATAatatgcacttttttttttctttcataattttg
aaattagggTTCAAGTTCAAGTCcacattaacatttttttttctgatgcT
ATGTGGCAAATGTTGGAATTGCAGTTTTTTGTTGGTCTTCACTTTTTCTC
AGATTGATGTTGGTGTGTTGTTCAGTGTAACAGAACCGCAGTTTTTGTTC
ATTTGTGAATTAAATGATGTCTCCTTTGTGAAGTTCTTGTGTTTTGTGTT
AACCCGATTTGTGTAACGAGCAGAGTTAGTATAGATTGATGTTGGTGTGT
TGTTCAGTGTAACAGAACCGCAGTTTTTGTTCATTTGTGAATTAAATGAT
GTCTCCTTTGTGAAGTTCTTGTGTTTTGTGTTAACCCGATTTGTGTAACG
AGCAGAGTTAGTATATACTTGGGTTTGGATTTCGAATAtgcacctttttt
tttcttcataattttgaaattagggTTCAAGCCCAAGTCTACATTAACAT
ATTATAACTTTGATGTTATGTGGCAAATGTTAGAATTGCACTTGTTTGTT
GGTCTTCGCGTTTTCTCAGATTGGTGTTGGTGTTTTGTCCAGCATTTGTT
GTTCAGTGTAACAGAACCGCAGTTTAGAGTGAAGCCTGCTGGTGTGTCAG
ACGTaagtttgtgtttttttgttttccagTAAACACTCTAGTTGGCtgct
tcttttactttttttttttccagcacTGGCTAATTATGGGAATAGTTTAT
GTTGCTAGATCATGTGGGCAGAGGCGATGGGTAAGCTTGAGGGTATGGAA
AGTGCTGACAGAGAACGTCTGTGGCCACAACTTGCTCAGGGTTTTAAGGA
TCTTTCACAACGTCTTAAGGTAAACATTGAAATGACAACTTTCTTCCCTT
CCATTACAAAACATCCGAACagtatgataattttattttattttactgcA
TTTTGTTCCATTTCACTTATAGTGATTTTACATAATAGAGATGTGTAAAT
TTCGCTTTGTTAACAACTAGAAGAGTACTAGTAACTTAATATATGATCTT
TCGAAGAAAATTTATGTTCATCTGTGGCTTTTTTGGCATGTTTCTGTAGT
TCATTTTCTAGATATCTTGCATAAATGGtcatcaatttcaaattttggtg
tACTTAATAAACATTGATGCCTGACAAGTGAACTTCATTTTACATGCAAA
AGTTATTTAGGATCCATTGagataaacttttctaaaagcACTtctaagag
ataaaaaatagaaagagaaattgaaataaacttctatataagctaaaact
atcttatgcataagttaaaaatgagaTCTTGGAAAAGCTAATATGAGAGA
GCTTCTACAAATATCTTATGCATAAACTAGTTTTAGCTTATAGAGGatct
ttttccatttttccttcttaattttctctcttaaaagtgTTTCTGAAGAA
GTTTACTCAAATAGACCCTTACAAGATTAACAGAGGATGTCAATATTTTC
AAACCAAGATTAAAATGTATAATCAGATAGGCCAAGCTATGCTAAAAATA
TTATGGACAATGATAAAAAGGATAAGTAGACACCCCGACaatgttttttt
gaaattaaggTGAGTTGGGTGCTTTTAGGAACATAACATGATTAACATCT
CCAATGGTagtaaatttagataaattgtCACCGAACCCTGTATTTACTGA
TTTTGGCTTTTCTGAATGGACTTCTCACTCATTACTAGGTAGacatttaa
atgataaaatgacTATATAGTGATGCTTTGAGTATTGTATTTTTTGAGTT
GTATCCATCAGTCAATATTTGATGCAAGAAATGGAGAATGCACCAAATTA
TGATATAGAAATTGATGAAATCAGAGCATGGATATAATCTAAGCCTAAGC
CTTGAGGATAAATTTTTTGCTTACATTGTCACGCAGATACAAGATGAAGT
CATTGTTTCTGATGCAGAGAGATTACGTGTAACCCAAAGCAATGTTAAAA
TGGTAATGCTCTCGCCGTTGCTTGCCTAGAGAAATGCTAATTTGGTACTG
GTTTTTCTATTGTGCATTGCTGAATTGTCTTTCCAATTGTTTGATGCCTT
TTGCAGCTCCAGAGACATTTTCAAGCTGATACTCTTCCGTGGATTCAAAG
GCTGaaacaaaaagaacaaattCTACAGCAACGTCTTTTAAGAGTAGGGA
CAACTATTATGTTTTTGAGAAGTAGACTGTTTTCTTGATTGTAGAATGAA
TCAATTCTCCAGCACAATATTAGCTATTGTAATAAGCATTTGATACAAAG
TTTTTACATTTCTCATTTCATCTGGTGTTCTCTTCCTCTCTCCGATTATC
TGCCCCTAGTAGCTTTTTGATTCTTAAAGTCACAATGATGAATTATAACA
AGCATTTTTTTATTCGTTGCCCCTTCATTATATCTTCTCATGTTTTGATT
CAAGGTAATGAGAATAGTAGAGGCTTTGGAGGGAAAAGGCTGCCGTATAC
CCTTAACAAAAGGGGAAGCTGAACTTGCTGAGAAATTAGCGACAATAACC
AGACAGGTAGAAATGTTATCCAACACCATCTTCTGCCTATTACTTTTTGT
TGCGGAGATGGAACTTAAATGGAAATATCTTTTCAGCTGAAAGGATCTGG
ATCGGAATTGTCTAGAAGGGTACAAAATCTACTAACTGTATCTCGTGGTA
AAGCGAACAGCAATGGATTTGGTGGCTCCGTTTATCTTCCGGGGTCAACC
AAAATTCATGAACAGAGTCTTACTGACCTACAGGAGGTAAAGATGCAACC
AACTTGAGAGATTTATTGCTCAACatcttgattttttatttgtgtttttg
cttttttgttttttttttaaaaaagcttATTTGTAAAAAAGATAATGCAT
CTGACACACAATGTAACGATGGCCCATTTTGTGTGAGCAGGTTTTACAGC
AGCAGATGGAGGCCATTGGAAGACTTGGCGGTGTTCTGAAGCGAGATATA
CGGGATATGGAGATTATGATGCATGAGGACACAGGAATGGAAATGGGAAT
TTAA
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Coding sequence (CDS) from alignment at Chr_1-CM003603.1:1538910..1542613+

>rna-KK1_019886_Cc_Asha_v1.0 ID=rna-KK1_019886_Cc_Asha_v1.0; Name=rna-KK1_019886; organism=Cajanus cajan; type=CDS; length=2286bp; location=Sequence derived from: Chr_1-CM003603.1:1538910..1542613+ (Cajanus cajan
ATGTTTGGCTCTGCGCAACCTTCTTCTCCTTTCGGCACTCCCTCTTCAAC
CCCCGCATTCGGCACACCTTCTTCCACACCTGCGTTCGGTACACCTTCCT
TCGCTACACCTTCTTCCACACCAGCGTTCGGTACACCGTCTTCTACACCT
GCGTTCGGTGCTTCTTCTACACCAGCGTTCGGTTCCTCCCTCTTCTCCAC
ACCCTTCTCTTCTCAACCGCAACAACAGCAACAAACGCCACtctttcaac
aacaacaacagccaCAACCTTCTAACGCTTTCGGTTTTCAAAACTCCCTC
GCGCCGCCGCAACCCTCTCCGTTCTCAAATGCTCAATTAACCACTCAGAT
GGCCAACGTGGCACCTGTTCCGTTCTCTCTCGCGGATCGCGATgttcagA
TGTTTGGCTCTGCGCAACCTTCTTCTCCTTTCGGCACTCCCTCTTCAACC
CCCGCATTCGGCACACCTTCTTCCACACCTGCGTTCGGTACACCTTCCTT
CGCTACACCTTCTTCCACACCAGCGTTCGGTACACCGTCTTCTACACCTG
CGTTCGGTGCTTCTTCTACACCAGCGTTCGGTTCCTCCCTCTTCTCCACA
CCCTTCTCTTCTCAACCGCAACAACAGCAACAAACGCCACtctttcaaca
acaacaacagccaCAACCTTCTAACGCTTTCGGTTTTCAAAACTCCCTCG
CGCCGCCGCAACCCTCTCCGTTCTCAAATGCTCAATTAACCACTCAGATG
GCCAACGTGGCACCTGTTCCGTTCTCTCTCGCGGATCGCGATgttcagGC
TATCCTTGATGCTTACAAGGAAGATCCTGGAAACCCCAAGTACGCTTTTA
AGGCTATCCTTGATGCTTACAAGGAAGATCCTGGAAACCCCAAGTACGCT
TTTAAGCATTTGTTGTTCAGTGTAACAGAACCGCAGTTTAGAGTGAAGCC
TGCTGGTGTGTCAGACCATTTGTTGTTCAGTGTAACAGAACCGCAGTTTA
GAGTGAAGCCTGCTGGTGTGTCAGACATCATGTGGGCAGAGGCGATGGGT
AAGCTTGAGGGTATGGAAAGTGCTGACAGAGAACGTCTGTGGCCACAACT
TGCTCAGGGTTTTAAGGATCTTTCACAACGTCTTAAGATCATGTGGGCAG
AGGCGATGGGTAAGCTTGAGGGTATGGAAAGTGCTGACAGAGAACGTCTG
TGGCCACAACTTGCTCAGGGTTTTAAGGATCTTTCACAACGTCTTAAGAT
ACAAGATGAAGTCATTGTTTCTGATGCAGAGAGATTACGTGTAACCCAAA
GCAATGTTAAAATGATACAAGATGAAGTCATTGTTTCTGATGCAGAGAGA
TTACGTGTAACCCAAAGCAATGTTAAAATGCTCCAGAGACATTTTCAAGC
TGATACTCTTCCGTGGATTCAAAGGCTGaaacaaaaagaacaaattCTAC
AGCAACGTCTTTTAAGACTCCAGAGACATTTTCAAGCTGATACTCTTCCG
TGGATTCAAAGGCTGaaacaaaaagaacaaattCTACAGCAACGTCTTTT
AAGAGTAATGAGAATAGTAGAGGCTTTGGAGGGAAAAGGCTGCCGTATAC
CCTTAACAAAAGGGGAAGCTGAACTTGCTGAGAAATTAGCGACAATAACC
AGACAGGTAATGAGAATAGTAGAGGCTTTGGAGGGAAAAGGCTGCCGTAT
ACCCTTAACAAAAGGGGAAGCTGAACTTGCTGAGAAATTAGCGACAATAA
CCAGACAGCTGAAAGGATCTGGATCGGAATTGTCTAGAAGGGTACAAAAT
CTACTAACTGTATCTCGTGGTAAAGCGAACAGCAATGGATTTGGTGGCTC
CGTTTATCTTCCGGGGTCAACCAAAATTCATGAACAGAGTCTTACTGACC
TACAGGAGCTGAAAGGATCTGGATCGGAATTGTCTAGAAGGGTACAAAAT
CTACTAACTGTATCTCGTGGTAAAGCGAACAGCAATGGATTTGGTGGCTC
CGTTTATCTTCCGGGGTCAACCAAAATTCATGAACAGAGTCTTACTGACC
TACAGGAGGTTTTACAGCAGCAGATGGAGGCCATTGGAAGACTTGGCGGT
GTTCTGAAGCGAGATATACGGGATATGGAGATTATGATGCATGAGGACAC
AGGAATGGAAATGGGAATTTAAGTTTTACAGCAGCAGATGGAGGCCATTG
GAAGACTTGGCGGTGTTCTGAAGCGAGATATACGGGATATGGAGATTATG
ATGCATGAGGACACAGGAATGGAAATGGGAATTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR025712Nup54_alpha-helical_dom