rna-KK1_019894

Transcript Overview
Namerna-KK1_019894
Unique Namerna-KK1_019894_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length1263
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_1-CM003603.1supercontigChr_1-CM003603.1:1605490..1606752 +Cajanus cajan Asha genome v1.0n/a
Chr_1-CM003603.1supercontigChr_1-CM003603.1:1605490..1606752 +Cajanus cajan Asha genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cccrR0011Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cccrR0043Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccpsR022Pisum sativum Cameor genome v1aPisum sativum
ccpsR024Pisum sativum Cameor genome v1aPisum sativum
ccpsR033Pisum sativum Cameor genome v1aPisum sativum
ccccR001Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvR0004Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0019Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuR0003Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0016Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cctifR0008Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0010Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0036Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR0010Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0039Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0014Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvrvR0038Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvssR0010Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvuaR0003Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvssR0042Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvuaR0020Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canccL0553Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL0728Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ccccaR0000Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0054Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR0009Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0042Vigna umbellata FF25 genome v1.0Vigna umbellata

Orthologs
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.1g090080.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_019894gene-KK1_019894_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_019894rna-KK1_019894_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_019894_Cc_Asha_v1.0rna-KK1_019894_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_019894_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1605490..1606752rna-KK1_019894_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1605490..1606752Cajanus cajanexon
rna-KK1_019894_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1605490..1606752rna-KK1_019894_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1605490..1606752Cajanus cajanexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_019894_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1605490..1606752rna-KK1_019894_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1605490..1606752Cajanus cajanCDS
rna-KK1_019894_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1605490..1606752rna-KK1_019894_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1605490..1606752Cajanus cajanCDS


Homology
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BLAST of rna-KK1_019894 vs. DB:Swiss
Match: POLR1_ARATH (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 6.024e-7
Identity = 44/205 (21.46%), Postives = 84/205 (40.98%), Query Frame = 1 
Query:  103 LADNNYQQWKHDMIVALETKNKEKFVLGTLAYPPST---------DPLHDAWKRCNKMVMSWLTRSMTPSIKQSVMWMDTAADIWCDLLECFSHGDKFRIVDLQEELQICKQGDSTVSQYYTHLKILWKELTMYRTLLVCTCSSPCNCGLILKIKKERD-DDCVIKFLRGLNDEFSQVRSQIMLMEPMPNLVKSFSLVLQQEREL 687
            L   NY  W   +    +      F+ G+   PP+T         +P +  WKR +K++ S +  +++ S++ +V    TAA IW  L + +++     +  L+ +L+   +G  T+  Y   L   + +L +                    + K  D D+ V + L  L +E+  V  QI   +  P L +    +L  E ++
Sbjct:   26 LTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLAL--------------------LGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERLLNHESKI 210
The following BLAST results are available for this feature:
BLAST of rna-KK1_019894 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
POLR1_ARATH6.024e-721.46Retrovirus-related Pol polyprotein from transposon... [more]
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InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029472Retrotransposon Copia-like, N-terminalPFAMPF14244Retrotran_gag_3coord: 21..67
e-value: 7.2E-10
score: 38.5
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 77..218
e-value: 3.1E-7
score: 30.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 245..283
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 245..281
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 309..334

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_019894_Cc_Asha_v1.0 ID=rna-KK1_019894_Cc_Asha_v1.0; Name=rna-KK1_019894; organism=Cajanus cajan; type=mRNA; length=1263bp
ATGGAAAAATCTGACAACCCTTCTGATCACCTCGTAAATCCAGCAAATCC
CCTTTTTCTACATCCAGGAGAAAACCCTGCACTCGTTCTCGTCACTCCTT
TGCTCGCTGATAACAACTATCAACAATGGAAACATGACATGATTGTGGCT
CTCGAGACAAAGAACAAAGAGAAATTCGTTCTTGGCACTCTTGCTTATCC
TCCTTCCACCGATCCTCTACATGACGCTTGGAAACGATGCAACAAGATGG
TGATGTCGTGGCTCACACGATCCATGACACCTTCCATCAAACAATCGGTT
ATGTGGATGGACACGGCTGCTGACATTTGGTGCGATCTTCTTGAGTGTTT
CTCTCATGGTGACAAATTCCGCATTGTTGATCTACAAGAGGAGCTTCAAA
TCTGCAAGCAAGGTGATTCCACTGTATCACAGTATTATACTCATCTGAAA
ATTCTTTGGAAAGAGCTTACGATGTATCGTACGCTTCTTGTTTGTACCTG
TTCCTCTCCATGTAATTGTGGTTTAATTCTCAAAATCAAAAAAGAACGAG
ATGATGATTGTGTTATCAAGTTTCTTCGTGGCCTTAATGATGAATTCTCT
CAAGTCCGTTCTCAAATCATGCTCATGGAACCTATGCCGAATCTTGTGAA
ATCTTTCTCCCTAGTTCTTCAACAAGAACGTGAGTTAAATGGTTCTTTCT
CTCATAATTCACAAGAGTCAGTTGCTAACATCAATTTTCAAGATAATTCC
AACAAAAACTCTTTCACAAACCGTGGAGGTTTCTCAAATTCTCGAGGCAG
AGGTCGTTCAAATAGATCCGCTGGACGCAACAATAAGTATTGTGATCATT
GCCAACGAACAAATCACACTTCTGAAACTTGTTGGATCAAACATGGACTT
CCAGTAGGTTACAAGAACAGTTTCAAGAATAATTCGAGTTCTTCTAAGCC
TTCTGCTAGTATTGCTGAAAGTGAATCTTCTATTGTCACTGAACCTTCTG
TTGTGGAATCTGACAAGCCAAGTGCTCAATTTGGTTTCTCTAAGGATCAA
TATCAAACCATACTTGCCTTGTTATCACAATCACAAAAAGCCTCTCCTCC
AGTAACAAGTGTCCATCAATGCACTGTTAATTCCTCAGGTTCTGTACCTT
CCTCTTTCTCTTGGATACTGGATAGTGGTGCTACTGACCACATTTGCCCT
TTCAAATCTGCTTTTAAAACTCTTAAACCAATTTCTCCTATTTCCATTCG
GCTACCTAATTAA
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protein sequence of rna-KK1_019894_Cc_Asha_v1.0

>rna-KK1_019894_Cc_Asha_v1.0 ID=rna-KK1_019894_Cc_Asha_v1.0; Name=rna-KK1_019894_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=420bp
MEKSDNPSDHLVNPANPLFLHPGENPALVLVTPLLADNNYQQWKHDMIVA
LETKNKEKFVLGTLAYPPSTDPLHDAWKRCNKMVMSWLTRSMTPSIKQSV
MWMDTAADIWCDLLECFSHGDKFRIVDLQEELQICKQGDSTVSQYYTHLK
ILWKELTMYRTLLVCTCSSPCNCGLILKIKKERDDDCVIKFLRGLNDEFS
QVRSQIMLMEPMPNLVKSFSLVLQQERELNGSFSHNSQESVANINFQDNS
NKNSFTNRGGFSNSRGRGRSNRSAGRNNKYCDHCQRTNHTSETCWIKHGL
PVGYKNSFKNNSSSSKPSASIAESESSIVTEPSVVESDKPSAQFGFSKDQ
YQTILALLSQSQKASPPVTSVHQCTVNSSGSVPSSFSWILDSGATDHICP
FKSAFKTLKPISPISIRLPN
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mRNA from alignment at Chr_1-CM003603.1:1605490..1606752+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_019894_Cc_Asha_v1.0 ID=rna-KK1_019894_Cc_Asha_v1.0; Name=rna-KK1_019894; organism=Cajanus cajan; type=mRNA; length=1263bp; location=Sequence derived from: Chr_1-CM003603.1:1605490..1606752+ (Cajanus cajan
ATGGAAAAATCTGACAACCCTTCTGATCACCTCGTAAATCCAGCAAATCC
CCTTTTTCTACATCCAGGAGAAAACCCTGCACTCGTTCTCGTCACTCCTT
TGCTCGCTGATAACAACTATCAACAATGGAAACATGACATGATTGTGGCT
CTCGAGACAAAGAACAAAGAGAAATTCGTTCTTGGCACTCTTGCTTATCC
TCCTTCCACCGATCCTCTACATGACGCTTGGAAACGATGCAACAAGATGG
TGATGTCGTGGCTCACACGATCCATGACACCTTCCATCAAACAATCGGTT
ATGTGGATGGACACGGCTGCTGACATTTGGTGCGATCTTCTTGAGTGTTT
CTCTCATGGTGACAAATTCCGCATTGTTGATCTACAAGAGGAGCTTCAAA
TCTGCAAGCAAGGTGATTCCACTGTATCACAGTATTATACTCATCTGAAA
ATTCTTTGGAAAGAGCTTACGATGTATCGTACGCTTCTTGTTTGTACCTG
TTCCTCTCCATGTAATTGTGGTTTAATTCTCAAAATCAAAAAAGAACGAG
ATGATGATTGTGTTATCAAGTTTCTTCGTGGCCTTAATGATGAATTCTCT
CAAGTCCGTTCTCAAATCATGCTCATGGAACCTATGCCGAATCTTGTGAA
ATCTTTCTCCCTAGTTCTTCAACAAGAACGTGAGTTAAATGGTTCTTTCT
CTCATAATTCACAAGAGTCAGTTGCTAACATCAATTTTCAAGATAATTCC
AACAAAAACTCTTTCACAAACCGTGGAGGTTTCTCAAATTCTCGAGGCAG
AGGTCGTTCAAATAGATCCGCTGGACGCAACAATAAGTATTGTGATCATT
GCCAACGAACAAATCACACTTCTGAAACTTGTTGGATCAAACATGGACTT
CCAGTAGGTTACAAGAACAGTTTCAAGAATAATTCGAGTTCTTCTAAGCC
TTCTGCTAGTATTGCTGAAAGTGAATCTTCTATTGTCACTGAACCTTCTG
TTGTGGAATCTGACAAGCCAAGTGCTCAATTTGGTTTCTCTAAGGATCAA
TATCAAACCATACTTGCCTTGTTATCACAATCACAAAAAGCCTCTCCTCC
AGTAACAAGTGTCCATCAATGCACTGTTAATTCCTCAGGTTCTGtacctt
cctctttctcttggATACTGGATAGTGGTGCTACTGACCACATTTGCCCT
TTCAAATCTGCTTTTAAAACTCTTAAACCAATTTCTCCTATTTCCATTCG
GCTACCTAATTAA
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Coding sequence (CDS) from alignment at Chr_1-CM003603.1:1605490..1606752+

>rna-KK1_019894_Cc_Asha_v1.0 ID=rna-KK1_019894_Cc_Asha_v1.0; Name=rna-KK1_019894; organism=Cajanus cajan; type=CDS; length=2526bp; location=Sequence derived from: Chr_1-CM003603.1:1605490..1606752+ (Cajanus cajan
ATGGAAAAATCTGACAACCCTTCTGATCACCTCGTAAATCCAGCAAATCC
CCTTTTTCTACATCCAGGAGAAAACCCTGCACTCGTTCTCGTCACTCCTT
TGCTCGCTGATAACAACTATCAACAATGGAAACATGACATGATTGTGGCT
CTCGAGACAAAGAACAAAGAGAAATTCGTTCTTGGCACTCTTGCTTATCC
TCCTTCCACCGATCCTCTACATGACGCTTGGAAACGATGCAACAAGATGG
TGATGTCGTGGCTCACACGATCCATGACACCTTCCATCAAACAATCGGTT
ATGTGGATGGACACGGCTGCTGACATTTGGTGCGATCTTCTTGAGTGTTT
CTCTCATGGTGACAAATTCCGCATTGTTGATCTACAAGAGGAGCTTCAAA
TCTGCAAGCAAGGTGATTCCACTGTATCACAGTATTATACTCATCTGAAA
ATTCTTTGGAAAGAGCTTACGATGTATCGTACGCTTCTTGTTTGTACCTG
TTCCTCTCCATGTAATTGTGGTTTAATTCTCAAAATCAAAAAAGAACGAG
ATGATGATTGTGTTATCAAGTTTCTTCGTGGCCTTAATGATGAATTCTCT
CAAGTCCGTTCTCAAATCATGCTCATGGAACCTATGCCGAATCTTGTGAA
ATCTTTCTCCCTAGTTCTTCAACAAGAACGTGAGTTAAATGGTTCTTTCT
CTCATAATTCACAAGAGTCAGTTGCTAACATCAATTTTCAAGATAATTCC
AACAAAAACTCTTTCACAAACCGTGGAGGTTTCTCAAATTCTCGAGGCAG
AGGTCGTTCAAATAGATCCGCTGGACGCAACAATAAGTATTGTGATCATT
GCCAACGAACAAATCACACTTCTGAAACTTGTTGGATCAAACATGGACTT
CCAGTAGGTTACAAGAACAGTTTCAAGAATAATTCGAGTTCTTCTAAGCC
TTCTGCTAGTATTGCTGAAAGTGAATCTTCTATTGTCACTGAACCTTCTG
TTGTGGAATCTGACAAGCCAAGTGCTCAATTTGGTTTCTCTAAGGATCAA
TATCAAACCATACTTGCCTTGTTATCACAATCACAAAAAGCCTCTCCTCC
AGTAACAAGTGTCCATCAATGCACTGTTAATTCCTCAGGTTCTGtacctt
cctctttctcttggATACTGGATAGTGGTGCTACTGACCACATTTGCCCT
TTCAAATCTGCTTTTAAAACTCTTAAACCAATTTCTCCTATTTCCATTCG
GCTACCTAATTAAATGGAAAAATCTGACAACCCTTCTGATCACCTCGTAA
ATCCAGCAAATCCCCTTTTTCTACATCCAGGAGAAAACCCTGCACTCGTT
CTCGTCACTCCTTTGCTCGCTGATAACAACTATCAACAATGGAAACATGA
CATGATTGTGGCTCTCGAGACAAAGAACAAAGAGAAATTCGTTCTTGGCA
CTCTTGCTTATCCTCCTTCCACCGATCCTCTACATGACGCTTGGAAACGA
TGCAACAAGATGGTGATGTCGTGGCTCACACGATCCATGACACCTTCCAT
CAAACAATCGGTTATGTGGATGGACACGGCTGCTGACATTTGGTGCGATC
TTCTTGAGTGTTTCTCTCATGGTGACAAATTCCGCATTGTTGATCTACAA
GAGGAGCTTCAAATCTGCAAGCAAGGTGATTCCACTGTATCACAGTATTA
TACTCATCTGAAAATTCTTTGGAAAGAGCTTACGATGTATCGTACGCTTC
TTGTTTGTACCTGTTCCTCTCCATGTAATTGTGGTTTAATTCTCAAAATC
AAAAAAGAACGAGATGATGATTGTGTTATCAAGTTTCTTCGTGGCCTTAA
TGATGAATTCTCTCAAGTCCGTTCTCAAATCATGCTCATGGAACCTATGC
CGAATCTTGTGAAATCTTTCTCCCTAGTTCTTCAACAAGAACGTGAGTTA
AATGGTTCTTTCTCTCATAATTCACAAGAGTCAGTTGCTAACATCAATTT
TCAAGATAATTCCAACAAAAACTCTTTCACAAACCGTGGAGGTTTCTCAA
ATTCTCGAGGCAGAGGTCGTTCAAATAGATCCGCTGGACGCAACAATAAG
TATTGTGATCATTGCCAACGAACAAATCACACTTCTGAAACTTGTTGGAT
CAAACATGGACTTCCAGTAGGTTACAAGAACAGTTTCAAGAATAATTCGA
GTTCTTCTAAGCCTTCTGCTAGTATTGCTGAAAGTGAATCTTCTATTGTC
ACTGAACCTTCTGTTGTGGAATCTGACAAGCCAAGTGCTCAATTTGGTTT
CTCTAAGGATCAATATCAAACCATACTTGCCTTGTTATCACAATCACAAA
AAGCCTCTCCTCCAGTAACAAGTGTCCATCAATGCACTGTTAATTCCTCA
GGTTCTGtaccttcctctttctcttggATACTGGATAGTGGTGCTACTGA
CCACATTTGCCCTTTCAAATCTGCTTTTAAAACTCTTAAACCAATTTCTC
CTATTTCCATTCGGCTACCTAATTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR029472Copia-like_N