rna-KK1_019904
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_019904 vs. DB:Swiss
Match: FABG_CUPLA (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Cuphea lanceolata OX=3930 GN=CLKR27 PE=2 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 5.787e-88 Identity = 173/325 (53.23%), Postives = 202/325 (62.15%), Query Frame = 1 Query: 1 MASIAGSNC---VALRTANFAASGNRKIGQIRHWSPIPTNLRS-VSSGLRFQSNAPFTSSGVRAQVATFQEAGTGANLKVEAPVVVVTGASRGIGRAIALSLGKAGCKVLVNYARSS-------KEAE-----------EVSKE--IEAFGGQALTFGGDVS---NEADVESXXXXXXXXXXX------------------------XXXXGRIVNIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRNITVNAVAPGFIASDMTAKLGQDTEKKILETIPLGRYGRPDEVAGLVEFLALNQAASYITGQVFTIDGGMVM 822 MA+ + C VAL++ G R++ + SP+ S + S +SG+RAQVAT ++ GA VE+PVV+VTGASRGIG+AIALSLGKAGCKVLVNYARSS KE E +VSKE +EA A+ G V N A + K KKKKGRI+NIASVVGLVGN GQANYSAAKAGVIG TKTVA+EYASRNI VNAVAPGFI+SDMT+KLG D KKILETIPLGRYG+P+EVAGLVEFLA+N A+SY+TGQVFTIDGGM M Sbjct: 1 MATATAAGCSGAVALKSL-----GGRRLCIPQQLSPVLAGFGSHAAKSFPILSTRSIATSGIRAQVATAEKVSAGAGQSVESPVVIVTGASRGIGKAIALSLGKAGCKVLVNYARSSKEAEEVSKEIEAFGGQALTFGGDVSKEEDVEAMIKTAVDAWGTVDILVNNAGITRDGLLMRMKKSQWQEVIDLNLTGVFLCTQAAAKIMMKKKKGRIINIASVVGLVGNAGQANYSAAKAGVIGFTKTVAREYASRNINVNAVAPGFISSDMTSKLGDDINKKILETIPLGRYGQPEEVAGLVEFLAINPASSYVTGQVFTIDGGMTM 320
BLAST of rna-KK1_019904 vs. DB:Swiss
Match: FABG1_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic OS=Brassica napus OX=3708 GN=gbkr1 PE=1 SV=1) HSP 1 Score: 265.388 bits (677), Expect = 5.269e-87 Identity = 167/302 (55.30%), Postives = 199/302 (65.89%), Query Frame = 1 Query: 61 GNRKIGQIRHWSPIPTNLRSVSSGLRFQSNAPF-TSSGVRAQVATFQEAGTGANLKVEAPVVVVTGASRGIGRAIALSLGKAGCKVLVNYARSSKEAEE------------------VSKE--IEAFGGQALTFGGDVS---NEADVESXX------------------------XXXXXXXXXXXXXGRIVNIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRNITVNAVAPGFIASDMTAKLGQDTEKKILETIPLGRYGRPDEVAGLVEFLALNQAASYITGQVFTIDGGMVM 822 G R+I Q+R WSP+ + + LR S F TS+ V+AQ +++ A KVE+PVVVVTGASRGIG+AIALSLGKAGCKVLVNYARS+KEAEE VSKE +EA A+ G + N A + AA K+MMKK+KGRI+NIASVVGL+GN+GQANY+AAKAGVIG +KT A+E ASRNI VN V PGFIASDMTAKLG+D EKKIL TIPLGRYG+P++VAGLVEFLAL+ AASYITGQ FTIDGG+ + Sbjct: 20 GFREIRQVRQWSPLQSAMPHFGM-LRCGSRQSFATSTVVKAQATAVEQSTGEAVPKVESPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRYGQPEDVAGLVEFLALSPAASYITGQAFTIDGGIAI 320
BLAST of rna-KK1_019904 vs. DB:Swiss
Match: FABG3_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 3, chloroplastic OS=Brassica napus OX=3708 GN=bkr3 PE=2 SV=1) HSP 1 Score: 264.233 bits (674), Expect = 1.122e-86 Identity = 165/302 (54.64%), Postives = 199/302 (65.89%), Query Frame = 1 Query: 61 GNRKIGQIRHWSPIPTNLRSVSSGLRFQSNAPF-TSSGVRAQVATFQEAGTGANLKVEAPVVVVTGASRGIGRAIALSLGKAGCKVLVNYARSSKEAEE------------------VSKE--IEAFGGQALTFGGDVS---NEADVESXX------------------------XXXXXXXXXXXXXGRIVNIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRNITVNAVAPGFIASDMTAKLGQDTEKKILETIPLGRYGRPDEVAGLVEFLALNQAASYITGQVFTIDGGMVM 822 G R+I Q+R W+P+ +++ F S F TS+ V+AQ +++ A KVE+PVVVVTGASRGIG+AIALSLGKAGCKVLVNYARS+KEAEE VSKE +EA A+ G + N A + AA K+MMKK+KGRI+NIASVVGL+GN+GQANY+AAKAGVIG +KT A+E ASRNI VN V PGFIASDMTAKLG+D EKKIL TIPLGRYG+P++VAGLVEFLAL+ AASYITGQ FTIDGG+ + Sbjct: 20 GFREIRQVRQWTPLQSSMP------HFGSRQSFATSTVVKAQATAVEQSTGEAVPKVESPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRYGQPEDVAGLVEFLALSPAASYITGQAFTIDGGIAI 315
BLAST of rna-KK1_019904 vs. DB:Swiss
Match: FABG2_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 2, chloroplastic OS=Brassica napus OX=3708 GN=bkr2 PE=2 SV=1) HSP 1 Score: 258.455 bits (659), Expect = 3.119e-84 Identity = 172/326 (52.76%), Postives = 205/326 (62.88%), Query Frame = 1 Query: 7 SIAGSNCVALRTANFAASGNRKIGQIRHWSPIPTNLRSVSSGLRFQSNAPFTSSG----VRAQVATFQEAGTG---ANLKVEAPVVVVTGASRGIGRAIALSLGKAGCKVLVNYARSSKEAE------------------EVSKE--IEAFGGQALTFGGDVS---NEADVESXX------------------------XXXXXXXXXXXXXGRIVNIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRNITVNAVAPGFIASDMTAKLGQDTEKKILETIPLGRYGRPDEVAGLVEFLALNQAASYITGQVFTIDGGMVM 822 SIAG +L+TA G R+I +R W+P+ + + LR S PF +S AT E TG A KVE+PVVVVTGASRGIG+AIALSLGKAGCKVLVNYARS+KEAE +VSKE ++A A+ G + N A + AA K+MMKK+KGRI+NIASVVGL+GN+GQANY+AAKAGVIG +KT A+E ASRNI VN V PGFIASDMTAKLG+D EKKIL TIPLGRYG+P++VAGLVEFLAL+ AASYITGQ FTIDGG+ + Sbjct: 5 SIAGPRLTSLKTAA-GKLGYREICHVRQWAPVHSPMPHFGM-LRCGSRRPFATSSSTVVQAQAQATAAEQSTGEEEAVPKVESPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEQVSKQIEAYGGQAITFGGDVSKEADVDAMMKTAVDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRYGQPEDVAGLVEFLALSPAASYITGQAFTIDGGIAI 328
BLAST of rna-KK1_019904 vs. DB:Swiss
Match: FABG_ARATH (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g24360 PE=1 SV=2) HSP 1 Score: 247.669 bits (631), Expect = 4.650e-80 Identity = 160/320 (50.00%), Postives = 204/320 (63.75%), Query Frame = 1 Query: 4 ASIAGSNCVALRTANFAASGNRKIGQIRHWSPIPTNLRSVSSGLRFQSNAPFTSSGVRAQVATFQEAGTGANLKVEAPVVVVTGASRGIGRAIALSLGKAGCKVLVNYARSS-------KEAEE-----------VSK--EIEAFGGQALTFGGDVS---NEADVESXX------------------------XXXXXXXXXXXXXGRIVNIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRNITVNAVAPGFIASDMTAKLGQDTEKKILETIPLGRYGRPDEVAGLVEFLALNQAASYITGQVFTIDGGMVM 822 A++A ++L+ A G R+I QIR +P+ + + LR +S PF++S V+AQ +++ KVE+PVVV+TGASRGIG+AIAL+LGKAGCKVLVNYARS+ K+ EE VSK +++A AL G + N A + AA K+MMKKK+GRI+NI+SVVGL+GN+GQANY+AAK GVI +KT A+E ASRNI VN V PGFIASDMTA+LG+D EKKIL TIPLGRYG+ +EVAGLVEFLAL+ AASYITGQ FTIDGG+ + Sbjct: 3 AAVAAPRLISLKA--VAKLGFREISQIRQLAPLHSAIPHFGM-LRCRSRQPFSTSVVKAQATATEQSPGEVVQKVESPVVVITGASRGIGKAIALALGKAGCKVLVNYARSAKEAEEVAKQIEEYGGQAITFGGDVSKATDVDAMMKTALDKWGTIDVVVNNAGITRDTLLIRMKQSQWDEVIALNLTGVFLCTQAAVKIMMKKKRGRIINISSVVGLIGNIGQANYAAAKGGVISFSKTAAREGASRNINVNVVCPGFIASDMTAELGEDMEKKILGTIPLGRYGKAEEVAGLVEFLALSPAASYITGQAFTIDGGIAI 319
BLAST of rna-KK1_019904 vs. DB:Swiss
Match: FABG4_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 4 (Fragment) OS=Brassica napus OX=3708 GN=bkr4 PE=2 SV=1) HSP 1 Score: 234.572 bits (597), Expect = 6.303e-76 Identity = 147/244 (60.25%), Postives = 170/244 (69.67%), Query Frame = 1 Query: 223 KVEAPVVVVTGASRGIGRAIALSLGKAGCKVLVNYARS-------SKEAEE-----------VSKE----------IEAFG---------GQALTFGGDVSNEADVESX-------XXXXXXXXXXXXXXGRIVNIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRNITVNAVAPGFIASDMTAKLGQDTEKKILETIPLGRYGRPDEVAGLVEFLALNQAASYITGQVFTIDGGMVM 822 KVE+PVVVVTGASRGIG+AIALSLGKAGCKVLVNYARS SK+ EE VSKE ++ +G G L S +V + AA K+MMKK+KGRI+NIASVVGL+GN+GQANY+AAKAGVIG +KT A+E ASRNI VN V PGFIASDMTAKLG+D EKKIL TIPLGRYG+P++VAGLVEFLAL+ AASYITGQ FTIDGG+ + Sbjct: 11 KVESPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEEVSKQIEEYGGQAITFGGDVSKEADVDAMMKTAVDKWGTIDVVVNNAGDTLLIRMKKSQWDEVMDLNLTGVFLCSQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRYGQPEDVAGLVEFLALSPAASYITGQTFTIDGGIAI 254
BLAST of rna-KK1_019904 vs. DB:Swiss
Match: FABG5_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 5, chloroplastic (Fragment) OS=Brassica napus OX=3708 GN=bkr1 PE=2 SV=1) HSP 1 Score: 231.106 bits (588), Expect = 1.164e-73 Identity = 153/301 (50.83%), Postives = 190/301 (63.12%), Query Frame = 1 Query: 61 GNRKIGQIRHWSPIPTNLRSVSSGLRFQSNAPFTSSGVRAQVATFQEAGTGANLKVEAPVVVVTGASRGIGRAIALSLGKAGCKVLVNYARS-------SKEAEE-----------VSKE--IEAFGGQALTFGGDVS---NEADVESXX------------------------XXXXXXXXXXXXXGRIVNIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRNITVNAVAPGFIASDMTAKLGQDTEKKILETIPLGRYGRPDEVAGLVEFLALNQAASYITGQVFTIDGGMVM 822 G R+I Q+R W+P+ + + G+ + + + +AQ ++ A KVE+PVVVVTGASRGIG+AIALSLGKAGCKVLVNYARS SK+ EE VSKE +++ A+ G + N A + AA K+MMKK+KGRI+NIASVVGL+GN+GQANY+AAKAGVIG +KT A+E ASRNI VN V PGFIASDMTAKLG+D EKKIL TIPLGRYG+P+ VAGLVEFLAL+ A+SYITG F+I GG + Sbjct: 19 GYREICQVRQWAPLKSAMPHF--GMLRCATSTVVKAQAQAQATATEQTTEEAVPKVESPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEEVSKQIEEYGGEAITFGGDVSKEADVDSMMKTAVDKWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRYGQPEYVAGLVEFLALSPASSYITGHTFSIHGGFAI 317
BLAST of rna-KK1_019904 vs. DB:Swiss
Match: FABG6_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase (Fragments) OS=Brassica napus OX=3708 PE=1 SV=3) HSP 1 Score: 185.652 bits (470), Expect = 2.468e-57 Identity = 122/225 (54.22%), Postives = 149/225 (66.22%), Query Frame = 1 Query: 187 ATFQEAGTG-ANLKVEAPVVVVTGASRGIGRAIALSLGKAGCKVLVNYARSSKEAEEVSKEIEAFGGQALTFGGDV---SNEADVESXX---------XXXXXXXXXXXXXGRIVNIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRNITVNAVAPGFIASDMTAKLGQDTEKKILETIPLGRYGRPDEVAGLVEFLALNQAASYITGQVFTIDGGMVM 822 AT QE G A KVE+PVV A VLVNYAR + +++A A+ + G + +N A + + AA K+MMKK+KGRI+NIASVVGL+GN+GQANY+AAKAGVIG +KT A+E ASRNI VN V PGFIAS+MTAKLG+D EKKIL TIPLGRYG+P++VAGLVEFLAL+ AASYITGQ FTIDGG+ + Sbjct: 1 ATAQEQPEGEAPDKVESPVVXXXEAXI----------------VLVNYAREA--------DVDAMMKDAVDYWGQIDVIANNAGITVIALNLTGVFLCSQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASEMTAKLGEDMEKKILGTIPLGRYGQPEDVAGLVEFLALSPAASYITGQTFTIDGGIAI 201
BLAST of rna-KK1_019904 vs. DB:Swiss
Match: FABG_SYNY3 (3-oxoacyl-[acyl-carrier-protein] reductase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=fabG PE=1 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.019e-46 Identity = 79/114 (69.30%), Postives = 92/114 (80.70%), Query Frame = 1 Query: 481 GRIVNIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRNITVNAVAPGFIASDMTAKLGQDTEKKILETIPLGRYGRPDEVAGLVEFLALNQAASYITGQVFTIDGGMVM 822 GRI+NI SV G++GN GQANYSAAKAGVIG TKTVAKE ASR +TVNAVAPGFIA+DMT L + IL+ IPL RYG+P+EVAG + FLA + AA+YITGQ F +DGGMVM Sbjct: 136 GRIINITSVAGMMGNPGQANYSAAKAGVIGFTKTVAKELASRGVTVNAVAPGFIATDMTENLNAE---PILQFIPLARYGQPEEVAGTIRFLATDPAAAYITGQTFNVDGGMVM 246 HSP 2 Score: 54.6842 bits (130), Expect = 1.423e-7 Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 1 Query: 226 VEAPVVVVTGASRGIGRAIALSLGKAGCKVLVNYARSSKEAEEVSKEIEAFGGQALTFGGDVSNEADVE 432 + A V +VTGASRGIG+A AL+L G KV+VNYA+SS A+ V EI A GG+A+ +V+N +V+ Sbjct: 4 LTAQVALVTGASRGIGKATALALAATGMKVVVNYAQSSTAADAVVAEIIANGGEAIAVQANVANADEVD 72
BLAST of rna-KK1_019904 vs. DB:Swiss
Match: FABG_BACSU (3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Bacillus subtilis (strain 168) OX=224308 GN=fabG PE=3 SV=3) HSP 1 Score: 152.91 bits (385), Expect = 5.101e-44 Identity = 72/114 (63.16%), Postives = 93/114 (81.58%), Query Frame = 1 Query: 481 GRIVNIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRNITVNAVAPGFIASDMTAKLGQDTEKKILETIPLGRYGRPDEVAGLVEFLALNQAASYITGQVFTIDGGMVM 822 GRI+N++S+VG+ GN GQANY AAKAGVIGLTK+ AKE ASRNITVNA+APGFI++DMT KL +D + ++L+ IPL R+G P +V+ +V FLA ++ A Y+TGQ IDGGMVM Sbjct: 134 GRIINVSSIVGVSGNPGQANYVAAKAGVIGLTKSSAKELASRNITVNAIAPGFISTDMTDKLAKDVQDEMLKQIPLARFGEPSDVSSVVTFLA-SEGARYMTGQTLHIDGGMVM 246 HSP 2 Score: 67.3958 bits (163), Expect = 6.650e-12 Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 1 Query: 244 VVTGASRGIGRAIALSLGKAGCKVLVNYARSSKEAEEVSKEIEAFGGQALTFGGDVSNEADVES 435 +VTGASRGIGR+IAL L K+G V+VNY+ + +A EV EI++ G +A+ DVSN DV++ Sbjct: 8 IVTGASRGIGRSIALDLAKSGANVVVNYSGNEAKANEVVDEIKSMGRKAIAVKADVSNPEDVQN 71 The following BLAST results are available for this feature:
BLAST of rna-KK1_019904 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_019904_Cc_Asha_v1.0 ID=rna-KK1_019904_Cc_Asha_v1.0; Name=rna-KK1_019904; organism=Cajanus cajan; type=mRNA; length=825bpback to top protein sequence of rna-KK1_019904_Cc_Asha_v1.0 >rna-KK1_019904_Cc_Asha_v1.0 ID=rna-KK1_019904_Cc_Asha_v1.0; Name=rna-KK1_019904_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=274bpback to top mRNA from alignment at Chr_1-CM003603.1:1650866..1654241+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_019904_Cc_Asha_v1.0 ID=rna-KK1_019904_Cc_Asha_v1.0; Name=rna-KK1_019904; organism=Cajanus cajan; type=mRNA; length=3376bp; location=Sequence derived from: Chr_1-CM003603.1:1650866..1654241+ (Cajanus cajanback to top Coding sequence (CDS) from alignment at Chr_1-CM003603.1:1650866..1654241+ >rna-KK1_019904_Cc_Asha_v1.0 ID=rna-KK1_019904_Cc_Asha_v1.0; Name=rna-KK1_019904; organism=Cajanus cajan; type=CDS; length=1650bp; location=Sequence derived from: Chr_1-CM003603.1:1650866..1654241+ (Cajanus cajanback to top |