Transcript Overview
Name rna-KK1_019920 Unique Name rna-KK1_019920_Cc_Asha_v1.0 Type mRNA Organism Cajanus cajan (pigeon pea) Sequence length 435 Product Putative ribonuclease H protein At1g65750
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
rna-KK1_019920 rna-KK1_019920_Cc_Asha_v1.0-protein Cajanus cajan polypeptide rna-KK1_019920_Cc_Asha_v1.0 rna-KK1_019920_Cc_Asha_v1.0 Cajanus cajan polypeptide
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-KK1_019920_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1755256..1755690 rna-KK1_019920_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1755256..1755690 Cajanus cajan CDS rna-KK1_019920_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1755256..1755690 rna-KK1_019920_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1755256..1755690 Cajanus cajan CDS
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-KK1_019920_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1755256..1755690 rna-KK1_019920_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1755256..1755690 Cajanus cajan exon rna-KK1_019920_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1755256..1755690 rna-KK1_019920_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1755256..1755690 Cajanus cajan exon
Homology
BLAST of rna-KK1_019920 vs. DB:Swiss
Match:
RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)
HSP 1 Score: 75.485 bits (184), Expect = 1.856e-15
Identity = 47/134 (35.07%), Postives = 64/134 (47.76%), Query Frame = 1
Query: 31 WTPPKNQFLKLNVDGSFNVSNGRMSIGGVVRDCAGRWLYGFSKTAGKGDHILAELLAIKTGLSRCWEKGWKHIICESDCLEVTKVLPLEKEDHSHRHKHCGTIEDIRILLRKSWFTTIVHINRDANKVADRLAS 432
W P ++K+N DG+ + G S GGV+RDC G W GFS G+ AEL + GL WEK + E D + L K S H + L+K W IVH+ R+AN++AD LA+
Sbjct: 452 WVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFL---KTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLAN 582
The following BLAST results are available for this feature:
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
50 100 150 200 250 300 350 400 Expect = 1.8E-25 / Score = 89.1 Score = 10.498 Expect = 2.1E-18 / Score = 68.6 Expect = 6.83469E-34 / Score = 113.178 Score = Sequence PF13456 PS50879 G3DSA:3.30.420.10 cd06222 SSF53098
IPR Term IPR Description Source Source Term Source Description Alignment
IPR002156 Ribonuclease H domain PFAM PF13456 RVT_3 coord: 22..143 IPR002156 Ribonuclease H domain PROSITE PS50879 RNASE_H coord: 15..144 IPR036397 Ribonuclease H superfamily GENE3D 3.30.420.10 coord: 18..144 None No IPR available CDD cd06222 RNase_H_like coord: 21..143 IPR012337 Ribonuclease H-like superfamily SUPERFAMILY 53098 Ribonuclease H-like coord: 18..143
Sequences
The
following sequences are available for this feature:
mRNA sequence
>rna-KK1_019920_Cc_Asha_v1.0 ID=rna-KK1_019920_Cc_Asha_v1.0; Name=rna-KK1_019920; organism=Cajanus cajan; type=mRNA; length=435bp back to top protein sequence of rna-KK1_019920_Cc_Asha_v1.0
>rna-KK1_019920_Cc_Asha_v1.0 ID=rna-KK1_019920_Cc_Asha_v1.0; Name=rna-KK1_019920_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=144bp back to top mRNA from alignment at Chr_1-CM003603.1:1755256..1755690-
Legend: polypeptide CDS exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_019920_Cc_Asha_v1.0 ID=rna-KK1_019920_Cc_Asha_v1.0; Name=rna-KK1_019920; organism=Cajanus cajan; type=mRNA; length=435bp; location=Sequence derived from: Chr_1-CM003603.1:1755256..1755690- (Cajanus cajanATGCTGCAACATGAGTTTAATCACTCTCCCTGGACCCCTCCTAAGAATCA
GTTTTTGAAACTGAACGTGGATGGCAGCTTTAATGTATCTAATGGTAGGA
TGAGTATTGGTGGGGTGGTTCGGGACTGCGCTGGAAGATGGCTTTATGGG
TTTTCCAAAACAGCTGGGAAGGGCGACCACATTCTAGCCGAGCTGCTTGC
TATCAAGACTGGTCTTTCTAGATGTTGGGAAAAGGGTTGGAAGCATATTA
TTTGTGAATCAGACTGCTTGGAAGTTACTAAAGTGCTCCCCTTAGAGAAG
GAGGACCATAGTCACCGTCATAAACATTGTGGAACCATTGAGGATATTCG
TATTCTCTTGAGGAAAAGCTGGTTCACCACCATAGTTCACATAAACAGAG
ATGCCAATAAGGTCGCAGATAGACTTGCAAGTTGA back to top Coding sequence (CDS) from alignment at Chr_1-CM003603.1:1755256..1755690-
>rna-KK1_019920_Cc_Asha_v1.0 ID=rna-KK1_019920_Cc_Asha_v1.0; Name=rna-KK1_019920; organism=Cajanus cajan; type=CDS; length=870bp; location=Sequence derived from: Chr_1-CM003603.1:1755256..1755690- (Cajanus cajan back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: Molecular Function
Term Definition
GO:0004523 RNA-DNA hybrid ribonuclease activity GO:0003676 nucleic acid binding
