rna-KK1_019929
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_019929 vs. DB:Swiss
Match: KCR1_ARATH (Very-long-chain 3-oxoacyl-CoA reductase 1 OS=Arabidopsis thaliana OX=3702 GN=KCR1 PE=1 SV=1) HSP 1 Score: 399.823 bits (1026), Expect = 2.987e-139 Identity = 202/320 (63.12%), Postives = 260/320 (81.25%), Query Frame = 1 Query: 1 MECCIIARLKAQPLWFAALFIXXXXXXXXXXXXXXXXXXXNFLRPPKNLKKYGSWALVTGPTDGIGKSFAFELARKGLNLVLVGRSPEKLKSVSDSISAKFGKIEVRTVVVDFAADLDEGVARIGAAIEXXXXXXXXXXXXXSYPYARFFHEVDEGLLNNLIKVNVVGTTKVTQVVLPGMLKRKKGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIRRSSFFVPSTDGYARAGVRWIGYEPRCTPYWPHTLLWAVAYSLPEFVVDAWRLWFCLGIRKRGQRKDATKKE 960 ME C K+QP W LF++G ++I K L++ Y+ FLRP KNL++YGSWA++TGPTDGIGK+FAF+LA+KGLNL+LV R+P+KLK VSDSI +K+ + ++ TVV+DF+ D+DEGV RI +IEGLDVG+L+NN G+SYPYA++FHEVDE L+NNLIK+NV GTTKVTQ VLP MLKRKKGAI+N+GSGAA +IPS P Y+VYA K Y+DQF++CL+VEYKKSGIDVQCQVPLYVATKM IRR+SF V S +GYA+A +R++GYE +CTPYWPH L+ AV +LPE V +++ + CL IRK+G +KD+ KKE Sbjct: 1 MEIC--TYFKSQPTWLLILFVLGSISIFKFIFTLLRSFYIYFLRPSKNLRRYGSWAIITGPTDGIGKAFAFQLAQKGLNLILVARNPDKLKDVSDSIRSKYSQTQILTVVMDFSGDIDEGVKRIKESIEGLDVGILINNAGMSYPYAKYFHEVDEELINNLIKINVEGTTKVTQAVLPNMLKRKKGAIINMGSGAAALIPSYPFYSVYAGAKTYVDQFTKCLHVEYKKSGIDVQCQVPLYVATKMTKIRRASFLVASPEGYAKAALRFVGYEAQCTPYWPHALMGAVVSALPESVFESFNIKRCLQIRKKGLQKDSMKKE 318
BLAST of rna-KK1_019929 vs. DB:Swiss
Match: KCR2_ARATH (Very-long-chain 3-oxoacyl-CoA reductase-like protein At1g24470 OS=Arabidopsis thaliana OX=3702 GN=KCR2 PE=2 SV=1) HSP 1 Score: 268.47 bits (685), Expect = 1.098e-87 Identity = 145/273 (53.11%), Postives = 200/273 (73.26%), Query Frame = 1 Query: 124 FLRPPKNLKKYGSWALVTGPTDGIGKSFAFELARKGLNLVLVGRSPEKLKSVSDSISAKFGKIEVRTVVVDFAADLDEGVARIGAAIEXXXXXXXXXXXXXSYPYARFFHEVDEGLLNNLIKVNVVGTTKVTQVVLPGMLKRKKGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKM----ASIRRSSFFVPSTDGYARAGVRWIGYEPRCTPYWPHTLLWAVAYSLPEFVVDAWRLWFCLGIRKR 930 FL PK LK+YGSWA+VTG T+GIG++FA ELA+ GLNL+LV R+ KL+SVSD +F I+++ + DF+++ G I I+GL+VG+L+NNVG++YP A FFHEVD+ +++VN+ TT VT+ ++ ML R++GAIVNI SGAA+V+PS PLYA+YAATKAY+D SR L+VEYK+ GIDVQCQVPLYV+T+M A+I + S FVPS + YA+A V IG RC+P+W H+L W + +P+ +VD WRL +G+R+R Sbjct: 41 FLLTPKRLKRYGSWAMVTGATEGIGRAFAHELAKHGLNLILVSRNLSKLESVSDDFQQEFPHIKIKIIPFDFSSE--GGYGAIEEGIKGLEVGILINNVGITYPRAMFFHEVDQLTWTKILRVNLEATTWVTRSLIGPMLHRRRGAIVNISSGAAVVVPSHPLYAIYAATKAYVDALSRSLHVEYKQFGIDVQCQVPLYVSTRMVSEVAAIDKPSLFVPSPEVYAKAAVAQIGIGSRCSPFWAHSLQWFLVGLVPDNLVDTWRL--SIGLRRR 309
BLAST of rna-KK1_019929 vs. DB:Swiss
Match: DHB12_RAT (Very-long-chain 3-oxoacyl-CoA reductase OS=Rattus norvegicus OX=10116 GN=Hsd17b12 PE=2 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 4.554e-59 Identity = 118/272 (43.38%), Postives = 179/272 (65.81%), Query Frame = 1 Query: 151 KYGSWALVTGPTDGIGKSFAFELARKGLNLVLVGRSPEKLKSVSDSISAKFGKIEVRTVVVDFAADLDEGVARIGAAIEXXXXXXXXXXXXXSYPYARFFHEVDE--GLLNNLIKVNVVGTTKVTQVVLPGMLKRKKGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIRRSSFFVPSTDGYARAGVRWIGYEPRCTPYWPHTLLWAVAYSLPEFVVDAWRLWFCLGIRKRGQRKDATKKE 960 + G WA+VTG TDGIGKS+A ELA++G+ +VL+ RS +KLK VS++I KF +E RT+ VDF+ LD+ +I + GL++GVLVNNVG+SY Y +F E+ + + LI +NV+ KVT++VLPGM++R KG I+NI S + + +P PL VY+ATKA++D FS+CL+ EYK GI VQ +P +VATK+A IR+ + PS + + ++ ++ +G + R T Y H ++ ++ LP ++ + F +R R +K TKK Sbjct: 48 RLGEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLKEVSNNIKEKFN-VETRTIAVDFS--LDDIYDKIKTGLSGLEIGVLVNNVGMSYEYPEYFLEIPDLDNTIKKLININVLSICKVTRLVLPGMVERSKGVILNISSASGM-LPV-PLLTVYSATKAFVDFFSQCLHEEYKSKGIFVQSVLPFFVATKLAKIRKPTLDKPSAETFVKSAIKTVGLQTRTTGYVIHAIMGSINSILPRWIYFKTIMGFNKSLRNRYLKK--TKKN 312
BLAST of rna-KK1_019929 vs. DB:Swiss
Match: DHB12_MOUSE (Very-long-chain 3-oxoacyl-CoA reductase OS=Mus musculus OX=10090 GN=Hsd17b12 PE=1 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 2.339e-56 Identity = 111/266 (41.73%), Postives = 175/266 (65.79%), Query Frame = 1 Query: 151 KYGSWALVTGPTDGIGKSFAFELARKGLNLVLVGRSPEKLKSVSDSISAKFGKIEVRTVVVDFAADLDEGVARIGAAIEXXXXXXXXXXXXXSYPYARFFHEVDE--GLLNNLIKVNVVGTTKVTQVVLPGMLKRKKGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIRRSSFFVPSTDGYARAGVRWIGYEPRCTPYWPHTLLWAVAYSLPEFVVDAWRLWFCLGIRKRGQRK 942 + G WA+VTG TDGIGK++A ELA++G+ +VL+ RS +KL VS++I KF +E RT+ VDF+ LD+ +I + GL++GVLVNNVG+SY Y +F E+ + + LI +NV+ KVT++VLPGM++R KG I+NI S + + +P PL +Y+ATKA++D FS+CL+ EYK GI VQ +P VATK+A I++ + PS + + ++ ++ +G + R T Y H+L+ ++ +P ++ + F +R R +K Sbjct: 48 RLGEWAVVTGGTDGIGKAYAEELAKRGMKIVLISRSQDKLNQVSNNIKEKFN-VETRTIAVDFS--LDDIYDKIKTGLSGLEIGVLVNNVGMSYEYPEYFLEIPDLDNTIKKLININVLSVCKVTRLVLPGMVERSKGVILNISSASGM-LPV-PLLTIYSATKAFVDFFSQCLHEEYKSKGIFVQSVMPYLVATKLAKIQKPTLDKPSAETFVKSAIKTVGLQTRTTGYVIHSLMGSINSIMPRWMYFKIIMGFSKSLRNRYLKK 308
BLAST of rna-KK1_019929 vs. DB:Swiss
Match: HSDL1_CHICK (Hydroxysteroid dehydrogenase-like protein 1 OS=Gallus gallus OX=9031 GN=HSDL1 PE=2 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.479e-56 Identity = 112/272 (41.18%), Postives = 166/272 (61.03%), Query Frame = 1 Query: 145 LKKYGSWALVTGPTDGIGKSFAFELARKGLNLVLVGRSPEKLKSVSDSISAKFGKIEVRTVVVDFAADLDEGVARIGAAIEXXXXXXXXXXXXXSYPYARFFHEVDEGLLNNLIKVNVVGTTKVTQVVLPGMLKRKKGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIRR----SSFFVPSTDGYARAGVRWIGYEPRCTPYWPHTLLWAVAYSLPEFVVDAWRLWFCLGIRKRGQRKDA 948 +K+YG WA+VTG TDGIGK++A ELA++G+N++L+ RS EKL++VS SIS + K+E +V DF+ E I ++ ++G+LVNNVG+ Y Y +F + E +L ++I VN+ + +VLPGM++++KGAIVN+ S A+ P+ P+ Y A+KAY+D FSR LY EY GI VQ P +AT+M S R SFF PS + YA + +G R YW H++ + + LPE++ + +FC IRK A Sbjct: 63 VKRYGRWAVVTGSTDGIGKAYAEELAKRGVNIILISRSKEKLEAVSRSISETY-KVETDFIVADFSKG-REAYQAIKEGLKDREIGILVNNVGLFYTYPDYFTNLSEDMLWDMINVNIASANMMVHIVLPGMVEKRKGAIVNV-SSASCCQPT-PMLTTYGASKAYLDYFSRALYYEYASKGIFVQSLTPFVIATRMVSCSRVTSKRSFFFPSAEEYASHAISTLGLSKRTPGYWKHSIEFTLGERLPEWIWAWFAQYFCRIIRKEALTHKA 330
BLAST of rna-KK1_019929 vs. DB:Swiss
Match: DHB12_HUMAN (Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sapiens OX=9606 GN=HSD17B12 PE=1 SV=2) HSP 1 Score: 187.578 bits (475), Expect = 4.648e-56 Identity = 105/245 (42.86%), Postives = 167/245 (68.16%), Query Frame = 1 Query: 157 GSWALVTGPTDGIGKSFAFELARKGLNLVLVGRSPEKLKSVSDSISAKFGKIEVRTVVVDFAADLDEGVARIGAAIEXXXXXXXXXXXXXSYPYARFFHEVDE--GLLNNLIKVNVVGTTKVTQVVLPGMLKRKKGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIRRSSFFVPSTDGYARAGVRWIGYEPRCTPYWPHTLLWAVAYSLPEFV 885 G WA+VTG TDGIGKS+A ELA+ G+ +VL+ RS +KL VS I KF K+E RT+ VDFA++ + +I + GL++G+LVNNVG+SY Y +F +V + ++ +I +N++ K+TQ+VLPGM++R KGAI+NI SG+ + +P PL +Y+ATK ++D FS+CL+ EY+ G+ VQ +P +VATK+A IR+ + PS + + ++ ++ +G + R Y H L+ ++ +LP ++ Sbjct: 50 GEWAVVTGSTDGIGKSYAEELAKHGMKVVLISRSKDKLDQVSSEIKEKF-KVETRTIAVDFASE--DIYDKIKTGLAGLEIGILVNNVGMSYEYPEYFLDVPDLDNVIKKMININILSVCKMTQLVLPGMVERSKGAILNISSGSGM-LPV-PLLTIYSATKTFVDFFSQCLHEEYRSKGVFVQSVLPYFVATKLAKIRKPTLDKPSPETFVKSAIKTVGLQSRTNGYLIHALMGSIISNLPSWI 289
BLAST of rna-KK1_019929 vs. DB:Swiss
Match: DHB12_BOVIN (Very-long-chain 3-oxoacyl-CoA reductase OS=Bos taurus OX=9913 GN=HSD17B12 PE=2 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.170e-55 Identity = 115/264 (43.56%), Postives = 176/264 (66.67%), Query Frame = 1 Query: 157 GSWALVTGPTDGIGKSFAFELARKGLNLVLVGRSPEKLKSVSDSISAKFGKIEVRTVVVDFAADLDEGVARIGAAIEXXXXXXXXXXXXXSYPYARFFHEVDE--GLLNNLIKVNVVGTTKVTQVVLPGMLKRKKGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIRRSSFFVPSTDGYARAGVRWIGYEPRCTPYWPHTLLWAVAYSLPEFVVDAWRLWFCLGIRKRGQRK 942 G WA+VTG TDGIGKS+A ELA++G+ +VL+ RS +KL VS IS KF K+E +T+ VDF ++ + +I A++ GL++GVLVNNVG+SY Y +F +V + + LI VN + K+T++VLPGM++R KGAI+NI S + + PL +Y+ATKA++D FS+CL+ EYK G+ VQ +P YVATK+A I+R ++ PS + + ++ ++ IG + R Y H+L+ +V+ SLP ++ ++ IR R +K Sbjct: 50 GEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKF-KVETKTIAVDFTSE--DIYDKIKASLAGLNIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKMTRLVLPGMVERSKGAILNISSASGMY--PVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQSVLPYYVATKLAKIKRPTWDKPSPETFVKSAMKTIGVQSRTNGYPIHSLVASVSASLPSWLYFKIAMYSGNSIRVRYLKK 308
BLAST of rna-KK1_019929 vs. DB:Swiss
Match: DH12A_XENLA (Very-long-chain 3-oxoacyl-CoA reductase-A OS=Xenopus laevis OX=8355 GN=hsd17b12-a PE=2 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 9.393e-55 Identity = 114/271 (42.07%), Postives = 169/271 (62.36%), Query Frame = 1 Query: 151 KYGSWALVTGPTDGIGKSFAFELARKGLNLVLVGRSPEKLKSVSDSISAKFGKIEVRTVVVDFAADLDEGVARIGAAIEXXXXXXXXXXXXXSYPYARFFHEVD--EGLLNNLIKVNVVGTTKVTQVVLPGMLKRKKGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIRRSSFFVPSTDGYARAGVRWIGYEPRCTPYWPHTLLWAVAYSL-PEFVVDAWRLWFCLGIRKRGQRKDATK 954 + G WA+VTG TDGIGK++A ELAR+G+++VL+ RSPEKL + I F K+E + + DF E RI A + L++GVLVNNVGVSY Y +F E+ E L+ +I +N++ ++T++VLPGML R KG I+NI S + + PL VY+ATKA++D FSR L+ EY+ GI+VQ +P YVATK+A IR+ ++ PS + Y R+ V +G + + Y PH ++ ++ SL P V + + G+R R ++ K Sbjct: 52 RIGKWAVVTGATDGIGKAYAEELARRGMSIVLISRSPEKLDEAAKHIKETF-KVETKIIAADFGKP-TEIYERIEAGLRDLEIGVLVNNVGVSYEYPEYFLEIPDLENTLDKMININIMSVCQMTRLVLPGMLGRGKGVILNISSASGMY--PVPLLTVYSATKAFVDFFSRGLHAEYRNKGINVQSVLPFYVATKLAKIRKPTWDKPSPETYVRSAVNTVGLQTQTNGYLPHAIMGWISTSLVPVSVAISMGMKMNKGLRSRFLKRKKQK 318
BLAST of rna-KK1_019929 vs. DB:Swiss
Match: DHB12_MACFA (Very-long-chain 3-oxoacyl-CoA reductase OS=Macaca fascicularis OX=9541 GN=HSD17B12 PE=2 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 1.148e-54 Identity = 105/245 (42.86%), Postives = 165/245 (67.35%), Query Frame = 1 Query: 157 GSWALVTGPTDGIGKSFAFELARKGLNLVLVGRSPEKLKSVSDSISAKFGKIEVRTVVVDFAADLDEGVARIGAAIEXXXXXXXXXXXXXSYPYARFFHEVDE--GLLNNLIKVNVVGTTKVTQVVLPGMLKRKKGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIRRSSFFVPSTDGYARAGVRWIGYEPRCTPYWPHTLLWAVAYSLPEFV 885 G WA+VTG TDGIGKS+A ELA++G+ +VL+ RS +KL VS I KF K+E RT+ VDF L++ +I + GL++G+LVNNVG+SY Y +F +V + ++ +I +N++ K+TQ+VLPGM++R KGAI+NI SG+ + P PL +Y+ATK ++D FS+CL+ EY+ GI VQ +P +VATK+A IR+ + P+ + + ++ ++ +G + R Y H L+ + +LP ++ Sbjct: 50 GEWAVVTGGTDGIGKSYAEELAKRGMKVVLISRSQDKLDQVSSEIKEKF-KVETRTIAVDFT--LEDIYDKIKTGLAGLEIGILVNNVGMSYEYPEYFLDVPDLDNVIKKMININILSVCKMTQLVLPGMVERSKGAILNISSGSGM-FPV-PLLTIYSATKTFVDFFSQCLHEEYRSKGIFVQSVLPYFVATKLAKIRKPTLDKPTPETFVKSAIKTVGLQSRTNGYLIHVLMGWIISNLPSWI 289
BLAST of rna-KK1_019929 vs. DB:Swiss
Match: HSDL1_HUMAN (Inactive hydroxysteroid dehydrogenase-like protein 1 OS=Homo sapiens OX=9606 GN=HSDL1 PE=1 SV=3) HSP 1 Score: 181.415 bits (459), Expect = 1.520e-53 Identity = 116/272 (42.65%), Postives = 165/272 (60.66%), Query Frame = 1 Query: 145 LKKYGSWALVTGPTDGIGKSFAFELARKGLNLVLVGRSPEKLKSVSDSISAKFGKIEVRTVVVDFAADLDEGVARIGAAIEXXXXXXXXXXXXXSYPYARFFHEVDEGLLNNLIKVNVVGTTKVTQVVLPGMLKRKKGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMAS----IRRSSFFVPSTDGYARAGVRWIGYEPRCTPYWPHTLLWAVAYSLPEFVVDAWRLWFCLGIRKRGQRKDA 948 +K+YG WA+V+G TDGIGK++A ELA +GLN++L+ R+ EKL+ V+ I+ + K+E +V DF++ E I A++ DVG+LVNNVGV YPY ++F ++ E L ++I VN+ + + VVLPGM++RKKGAIV I SG+ P A ++A+KAY+D FSR L EY GI VQ +P YVAT M + + R S+ VPS YA V +G R T YW H++ + A +PE W + I R RK+A Sbjct: 63 IKQYGRWAVVSGATDGIGKAYAEELASRGLNIILISRNEEKLQVVAKDIADTY-KVETDIIVADFSSG-REIYLPIREALKDKDVGILVNNVGVFYPYPQYFTQLSEDKLWDIINVNIAAASLMVHVVLPGMVERKKGAIVTISSGSC--CKPTPQLAAFSASKAYLDHFSRALQYEYASKGIFVQSLIPFYVATSMTAPSNFLHRCSWLVPSPKVYAHHAVSTLGISKRTTGYWSHSIQFLFAQYMPE-----WLWVWGANILNRSLRKEA 325 The following BLAST results are available for this feature:
BLAST of rna-KK1_019929 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_019929_Cc_Asha_v1.0 ID=rna-KK1_019929_Cc_Asha_v1.0; Name=rna-KK1_019929; organism=Cajanus cajan; type=mRNA; length=963bpback to top protein sequence of rna-KK1_019929_Cc_Asha_v1.0 >rna-KK1_019929_Cc_Asha_v1.0 ID=rna-KK1_019929_Cc_Asha_v1.0; Name=rna-KK1_019929_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=320bpback to top mRNA from alignment at Chr_1-CM003603.1:1828084..1831000+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_019929_Cc_Asha_v1.0 ID=rna-KK1_019929_Cc_Asha_v1.0; Name=rna-KK1_019929; organism=Cajanus cajan; type=mRNA; length=2917bp; location=Sequence derived from: Chr_1-CM003603.1:1828084..1831000+ (Cajanus cajanback to top Coding sequence (CDS) from alignment at Chr_1-CM003603.1:1828084..1831000+ >rna-KK1_019929_Cc_Asha_v1.0 ID=rna-KK1_019929_Cc_Asha_v1.0; Name=rna-KK1_019929; organism=Cajanus cajan; type=CDS; length=1926bp; location=Sequence derived from: Chr_1-CM003603.1:1828084..1831000+ (Cajanus cajanback to top |