rna-KK1_003895

Transcript Overview
Namerna-KK1_003895
Unique Namerna-KK1_003895_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length1398
Productputative polygalacturonase
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_11-CM003613.1supercontigChr_11-CM003613.1:41942310..41946957 -Cajanus cajan Asha genome v1.0n/a
Chr_11-CM003613.1supercontigChr_11-CM003613.1:41942310..41946957 -Cajanus cajan Asha genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cccrR0376Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cccrR0378Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cccrR0382Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cccrR0392Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccpsR326Pisum sativum Cameor genome v1aPisum sativum
ccpsR402Pisum sativum Cameor genome v1aPisum sativum
ccpsR409Pisum sativum Cameor genome v1aPisum sativum
ccccR121Cajanus cajan Asha genome v1.0Cajanus cajan
ccccR137Cajanus cajan Asha genome v1.0Cajanus cajan
ccccR141Cajanus cajan Asha genome v1.0Cajanus cajan
caiccL0253Cicer arietinum ICC 4958 genome v2Cicer arietinum
ccpvR0478Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0483Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caiccL0390Cicer arietinum ICC 4958 genome v2Cicer arietinum
caiccL0399Cicer arietinum ICC 4958 genome v2Cicer arietinum
ccpvR0589Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0595Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caiccL0578Cicer arietinum ICC 4958 genome v2Cicer arietinum
ccvuR0478Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0485Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0580Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0587Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caccL0283Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL0286Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL0427Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL0438Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccL0549Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0855Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1044Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1048Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1403Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asccL0559Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asccL0563Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asccL0685Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asccL0695Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cctifR0434Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0438Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0443Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0503Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR0442Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0448Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0455Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0507Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0512Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0432Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvrvR0441Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvrvR0519Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvuaR0422Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvuaR0425Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvuaR0512Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvssR0499Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvssR0515Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvssR0566Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvssR0577Vicia sativa cv. Studenica genome v1.0Vicia sativa
canccL0273Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL0277Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL0420Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL0429Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjccL0587Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL0592Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL0728Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL0736Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carccL0289Cicer arietinum
carccL0295Cicer arietinum
carccL0451Cicer arietinum
carccL0464Cicer arietinum
ccccaR0584Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0596Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0612Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR0511Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0519Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0598Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0605Vigna umbellata FF25 genome v1.0Vigna umbellata

Orthologs
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.5g134840.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Phvul.007G209200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
evm.model.Chr01.1926.2.62113178Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Va02G050170.3Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vum_04G02809.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-TanjilR_16996Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vum_08G01512.1Vigna umbellata FF25 genome v1.0Vigna umbellata
LR48_mrnaVigan03g272400Vigna angularis Jingnong 6 genome v1.1Vigna angularis
jg2870.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat6g158880.1Pisum sativum Cameor genome v1aPisum sativum
Vigun01g202700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Cr_05618.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vfaba.Hedin2.R1.3g094720.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Ca_14230.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-TanjilR_05333Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun07g131300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vfaba.Hedin2.R1.5g170520.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-XM_014639324.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg31239.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_01049Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
evm.model.Chr07.1493Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Phvul.001G218400.3Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Psat3g016600.1Pisum sativum Cameor genome v1aPisum sativum
Va03G079630.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Ca_07177.1Cicer arietinum ICC 4958 genome v2Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-KK1_010990Cajanus cajan Asha genome v1.0Cajanus cajan
Cc_v2.0_08105.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Cc_v2.0_03803.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_003895gene-KK1_003895_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_003895rna-KK1_003895_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_003895_Cc_Asha_v1.0rna-KK1_003895_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41946940..41946957rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41946940..41946957Cajanus cajanCDS
rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41946102..41946419rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41946102..41946419Cajanus cajanCDS
rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41945616..41945736rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41945616..41945736Cajanus cajanCDS
rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41943626..41943800rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41943626..41943800Cajanus cajanCDS
rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41943410..41943480rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41943410..41943480Cajanus cajanCDS
rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41942310..41943004rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41942310..41943004Cajanus cajanCDS
rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41946940..41946957rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41946940..41946957Cajanus cajanCDS
rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41946102..41946419rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41946102..41946419Cajanus cajanCDS
rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41945616..41945736rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41945616..41945736Cajanus cajanCDS
rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41943626..41943800rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41943626..41943800Cajanus cajanCDS
rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41943410..41943480rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41943410..41943480Cajanus cajanCDS
rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41942310..41943004rna-KK1_003895_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41942310..41943004Cajanus cajanCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41946940..41946957rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41946940..41946957Cajanus cajanexon
rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41946102..41946419rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41946102..41946419Cajanus cajanexon
rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41945616..41945736rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41945616..41945736Cajanus cajanexon
rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41943626..41943800rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41943626..41943800Cajanus cajanexon
rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41943410..41943480rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41943410..41943480Cajanus cajanexon
rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41942310..41943004rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:41942310..41943004Cajanus cajanexon
rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41946940..41946957rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41946940..41946957Cajanus cajanexon
rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41946102..41946419rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41946102..41946419Cajanus cajanexon
rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41945616..41945736rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41945616..41945736Cajanus cajanexon
rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41943626..41943800rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41943626..41943800Cajanus cajanexon
rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41943410..41943480rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41943410..41943480Cajanus cajanexon
rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41942310..41943004rna-KK1_003895_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:41942310..41943004Cajanus cajanexon


Homology
BLAST of rna-KK1_003895 vs. DB:Swiss
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 457.603 bits (1176), Expect = 4.889e-157
Identity = 221/416 (53.12%), Postives = 290/416 (69.71%), Query Frame = 1
Query:  115 RPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDDWPVVDPLPSYGRGRELPGGRHKSLIYGRNLTDVVITGNNGTIDGQGSVWWNKFWNKTLDYTRPHLVELMNSTGVLISNITFLNSPFWTIHPVYCSNVIIRNVTILAPQSSPNTDGIDPDSSDNVCIEDCYISTGDDLISIKSGWDGYGISFGRPSTNINIRRLIGKTT-SAGIAIGSEMSGGVSEVHAEDIYVFDSRSAIRIKTSPGRGGYVRNVYISNMILANVDIAIRFTGLYGEHPDDTCDPNALPVIEKITIKDVTGEKVKRAGLIEGIKGDNFVNICLSNITLNVRS---KIPWNCSYVKGYSDLVSPEACEPLKERIFPEHISDCYYIPNHL 1350
            R HS S+ +FG VGDG TLNTKAFQ+A+  L+ +  +GGA+L+VPAG+WLTGSF L SH TL+L +DAV+L S +   WPV+ PLPSYGRGR+   GR+ SLI+G NLTDV+ITG+NGTIDGQG +WW +F    L YTRP+L+ELM S  + ISN+T LNSP W +HPVY  N++I+ +TILAP  SPNTDGI+PDS  N  IEDCYI +GDD +++KSGWD YGI++G P+  + IRRL   +  SA IA+GSEMSGG+ +V AEDI   +S S IRIKT  GRGGYV+++Y+  M +  +  A   TG YG H D+  DP A PVI+ I  +D+  E V  A  +EGI  D F  IC+SN+T+++ +   K+PW C+ V+G S  V+P  C  L ++  PE  S C +    L
Sbjct:   59 RAHSASLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHFTLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVTIHLAAKAKKVPWTCTDVEGISSGVTPTPCSTLPDQ-GPEKTSLCNFPAESL 473          
BLAST of rna-KK1_003895 vs. DB:Swiss
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.145e-27
Identity = 111/356 (31.18%), Postives = 166/356 (46.63%), Query Frame = 1
Query:  121 HSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDDWPVVDPL------PSYGRGRELPGGRHKSLIYGRNLTDVVITGNNGTIDGQGSVWWNKFWNKTLDYTRPHLVELMNSTGVLISNITFLNSPFWTIHPVYCSNVIIRNVTILAPQSSPNTDGIDPDSSDNVCIEDCYISTGDDLISIKSGWDGYGISFGRPSTNINIRRLIGKTTSAGIAIGSEMSGG----VSEVHAEDIYVFDSRSAIRIKTSPGRGGYVRNVYISNMILANVDIAIRFTGLY-GEHPDDTCDPNALPV-IEKITIKDVTGEKVKRAGL 1152
            +++ +T+FGAVGDG+T +++AF  A  +    +  G  +  VPAG            +T  L +     GS  S   PV   +      PS G  +    G     I   ++  +VI G+ G I+GQGS WW          +RP  ++  +   + +S +T L+SP   IH   C+ V I ++ I AP+SSPNTDGID  +S NV I+DC I+TGDD I+I SG           ++NI+I   I      GI+IGS    G    V  V  ++     + +  RIKT  G  GY R +  + + L NV+  I     Y G   D+  D  +  V + K+   +  G      G+
Sbjct:   22 NALDVTQFGAVGDGVTDDSQAFLKA--WEAVCSGTGDGQFVVPAG------------MTFML-QPLKFQGSCKST--PVFVQMLGKLVAPSKGNWK----GDKDQWILFTDIEGLVIEGD-GEINGQGSSWWEH------KGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-----------TSNIHISG-IDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGV 337          
BLAST of rna-KK1_003895 vs. DB:Swiss
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.013e-26
Identity = 114/387 (29.46%), Postives = 170/387 (43.93%), Query Frame = 1
Query:  130 SITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGQW-----LTGSFDLISHLTLWLDKDAVILGSTNSDDWPVVDPLPSYGRGRELPGGRHKSLIYGRNLTDVVITGNNGTIDGQGSVWWN---KFWN-KTL--DYTRPHLVELMNSTGVLISNITFLNSPFWTIHPVYCSNVIIRNVTILAPQSSPNTDGIDPDSSDNVCIEDCYISTGDDLISIKSGWDGYGISFGRPSTNINIRRLIGKTTSAGIAIGS----EMSGGVSEVHAEDIYVFDSRSAIRIKTSPGRGGYVRNVYISNMILANVDIAIRFTGLYGEHPDDTCDPNALPVIEKITIKDVTGEKVKRAGLIEGIKGDNF--VNICLSNITLNVRSKIPWNC 1239
            ++ ++GAVGDG   +T+AF       N+   K  A L VPA +      L        HL+  +D   V              P P+  +  ++        +    LTD  + G  G IDGQG  WW    K  N +T+  D  RP  +++  S  V +  +T +NSP + +    C  V I+ + I AP+ SPNTDGID  +S    IE C I TGDD I+I +G           S+NI I+ LI      GI+IGS         VS VH       D+++ +RIKT  G  G    +   N+ + N +  I     Y        +  +   I+ +T K++ G     A  I+ +  D+     I LSN++L + S  P +C
Sbjct:   60 NVEQYGAVGDGKHDSTEAFATT---WNAACKKASAVLLVPANKKFFVNNLVFRGPCQPHLSFKVDGTIV------------AQPDPARWKNSKI-------WLQFAQLTDFNLMGT-GVIDGQGQQWWAGQCKVVNGRTVCNDRNRPTAIKIDYSKSVTVKELTLMNSPEFHLVFGECEGVKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTG-----------SSNITIKDLIC-GPGHGISIGSLGRDNSRAEVSHVHVNRAKFIDTQNGLRIKTWQGGSGLASYITYENVEMINSENPILINQFYCTSASACQNQRSAVQIQGVTYKNIHGTSAT-AAAIQLMCSDSVPCTGIQLSNVSLKLTSGKPASC 410          
BLAST of rna-KK1_003895 vs. DB:Swiss
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.128e-23
Identity = 106/377 (28.12%), Postives = 169/377 (44.83%), Query Frame = 1
Query:  130 SITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDDWPVVDPLPSYGRGRELPGGRHKSLIYGRNLTDVVITGNNGTIDGQGSVWWNKFWNKTL-------DYTRPHLVELMNSTGVLISNITFLNSPFWTIHPVYCSNVIIRNVTILAPQSSPNTDGIDPDSSDNVCIEDCYISTGDDLISIKSGWDGYGISFGRPSTNINIRRLIGKTTSAGIAIGSEMSGG----VSEVHAEDIYVFDSRSAIRIKTSPGRGGYVRNVYISNMILANVDIAIRFTGLYGEHPDDTCDPNALPVIEKITIKDVTGEKVKRAGLIEGIKGDNF--VNICLSNITLNVRS 1221
            ++  +GAVGDG   +T AF+      N+  +K  A   VPA +       ++++L  +         S   D      P P+  +  ++        ++   LTD  + G  G IDGQG+ WW+    KT+       D  RP  +++  S  V +  +T  NSP + +    C  V I+ + I AP+ SPNTDGID  +S    IE C I TGDD +++ +G           S+NI I+ L       G++IGS   G     VS VH +     D+++ +RIKT  G  G   ++   N+ + N +  I     Y        +  +   I+ +T K++ G     A  I+ +  D+    NI LSN+ L + S
Sbjct:   61 NVEHYGAVGDGKHDSTDAFEKT---WNAACNKLSAVFLVPANKKF-----VVNNLVFYGPCQPHF--SFKVDGTIAAYPDPAKWKNSKI-------WMHFARLTDFNLMGT-GVIDGQGNRWWSDQC-KTINGRTVCNDKGRPTAIKIDFSKSVTVKELTLTNSPEFHLVFGECDGVKIQGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTG-----------SSNITIKDLTC-GPGHGMSIGSLGKGNSRSEVSFVHLDGAKFIDTQNGLRIKTWQGGSGLASHITYENVEMINAENPILINQFYCTSAAACKNQRSAVKIQDVTFKNIHGTSATTAA-IQLMCSDSVPCSNIKLSNVFLKLTS 405          
BLAST of rna-KK1_003895 vs. DB:Swiss
Match: PGLR_RHIRD (Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.078e-21
Identity = 66/207 (31.88%), Postives = 100/207 (48.31%), Query Frame = 1
Query:  544 VELMNSTGVLISNITFLNSPFWTIHPVYCSNVIIRNVTILAPQSSPNTDGIDPDSSDNVCIEDCYISTGDDLISIKSGW---DGYGISFGRPSTNINIRRLIGKTTSAGIAIGSEMSGGVSEVHAEDIYVFDSRSAIRIKT-SPGRGGYVRNVYISNMILANVDIAIRFTGLYGEHPDDTCD----------PNALPVIEKITIKDV 1122
            + L++     +   T  N+  WTIHP  C ++     TI+AP  SPNTDG +P+S  NV I     S GDD I++K+G    DG        +  I +R  + +    G+ IGSEMSGGV +V  ED  +  +   +R+KT +   GG V N+ +  ++L  V  A+     Y    D   D           +  P ++ IT++DV
Sbjct:   25 LHLVSCHKTQLLGFTIRNAASWTIHPQGCEDLTAAASTIIAPHDSPNTDGFNPESCRNVMISGVRFSVGDDCIAVKAGKRGPDGEDDHLAE-TRGITVRHCLMQPGHGGLVIGSEMSGGVHDVTVEDCDMIGTDRGLRLKTGARSGGGMVGNITMRRVLLDGVQTALSANAHYHCDADGHDDWVQSRNPAPVNDGTPFVDGITVEDV 230          
BLAST of rna-KK1_003895 vs. DB:Swiss
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.060e-21
Identity = 97/354 (27.40%), Postives = 147/354 (41.53%), Query Frame = 1
Query:  130 SITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGS---FDLISHLTLWLDKDAVILGSTNSDDWPVVDPLPSYGRGRELPGGRHKSLIYGRNLTDVVITGNNGTIDGQGSVWWN---KFWNKTL---DYTRPHLVELMNSTGVLISNITFLNSPFWTIHPVYCSNVIIRNVTILAPQSSPNTDGIDPDSSDNVCIEDCYISTGDDLISIKSGWDGYGISFGRPSTNINIRRLIGKTTSAGIAIGS----EMSGGVSEVHAEDIYVFDSRSAIRIKTSPGRGGYVRNVYISNMILANVDIAIRFTGLYGEHPDDTCDPNALPVIEKITIKDVTGEKVKRAGL 1152
            ++ ++GAVGDG    T+AF  A     +   K  A L VP  +    +   F+           D +I    N   W                   ++  +    LT   + G  G IDGQG  WW    K+ N      D  RP  ++   STG++I  +  +NSP + +    C  V I  ++I AP+ SPNTDGID  +S N  ++   I TGDD ++I +G           S+NI I  LI      GI+IGS         VS VH       D+++ +RIKT  G  G   ++   N+ + N +  I     Y        +  +   I+ +T K++ G     A +
Sbjct:   60 NVEKYGAVGDGKHDCTEAFSTA---WQAACKKPSAMLLVPGNKKFVVNNLFFNGPCQPHFTFKVDGIIAAYQNPASWK-----------------NNRIWLQFAKLTGFTLMGK-GVIDGQGKQWWAGQCKWVNGREICNDRDRPTAIKFDFSTGLIIQGLKLMNSPEFHLVFGNCEGVKIIGISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAIGTG-----------SSNIVIEDLIC-GPGHGISIGSLGRENSRAEVSYVHVNGAKFIDTQNGLRIKTWQGGSGMASHIIYENVEMINSENPILINQFYCTSASACQNQRSAVQIQDVTYKNIRGTSATAAAI 380          
BLAST of rna-KK1_003895 vs. DB:Swiss
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.366e-21
Identity = 87/308 (28.25%), Postives = 141/308 (45.78%), Query Frame = 1
Query:  124 SVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLT--LWLDKDAVILGSTNSDDWPVVDPLPSYGRGRELPGGRHKSLIYGRNLTDVVITGNNGTIDGQGSVWWNKFWNKTLDYTRPHLVELMNSTGVL-------ISNITFLNSPFWTIHPVYCSNVIIRNVTILAPQSSPNTDGIDPDSSDNVCIEDCYISTGDDLISIKSGWD-----------GYGISFG--------RPSTNINIRRLIGKTTSAGIAIGSEMSGG----VSEVHAEDIYVFDSRSAIRI 951
            S  IT+ GA G+G T +TKA Q A  + ++    G   + +P G +L G  +        + +  D  +L +T+   +                   H + I    + ++VITG  G +DGQG   W+K        T+ +  +++ ++ V+       +S +T LNS F+ ++   C N++I++VT+ AP  SPNTDGI    S  + I +  I  GDD ISI  G             G+GIS G        +  T+IN++    K T  G+ I +         VS++H E+I + DS + I I
Sbjct:   40 SFDITKLGASGNGKTDSTKAVQEA--WASACGGTGKQTILIPKGDFLVGQLNFTGPCKGDVTIQVDGNLLATTDLSQYK-----------------EHGNWIEILRVDNLVITGK-GNLDGQGPAVWSKN-----SCTKKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYQCKNMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYEDAASVLTVSKIHYENIKMEDSANPIFI 322          
BLAST of rna-KK1_003895 vs. DB:Swiss
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.184e-20
Identity = 86/308 (27.92%), Postives = 141/308 (45.78%), Query Frame = 1
Query:  124 SVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLT--LWLDKDAVILGSTNSDDWPVVDPLPSYGRGRELPGGRHKSLIYGRNLTDVVITGNNGTIDGQGSVWWNKFWNKTLDYTRPHLVELMNSTGVL-------ISNITFLNSPFWTIHPVYCSNVIIRNVTILAPQSSPNTDGIDPDSSDNVCIEDCYISTGDDLISIKSGWD-----------GYGISFG--------RPSTNINIRRLIGKTTSAGIAIGSEMSGG----VSEVHAEDIYVFDSRSAIRI 951
            S  IT+ GA G+G T +TKA Q A  + ++    G   + +P G +L G  +        + +  D  +L +T+   +                   H + I    + ++VITG  G +DGQG   W+K        T+ +  +++ ++ V+       +S +T LNS F+ ++   C +++I++VT+ AP  SPNTDGI    S  + I +  I  GDD ISI  G             G+GIS G        +  T+IN++    K T  G+ I +         VS++H E+I + DS + I I
Sbjct:   40 SFDITKLGASGNGKTDSTKAVQEA--WASACGGTGKQTILIPKGDFLVGQLNFTGPCKGDVTIQVDGNLLATTDLSQYK-----------------DHGNWIEILRVDNLVITGK-GNLDGQGPAVWSKN-----SCTKKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYEDAASVLTVSKIHYENIKMEDSANPIFI 322          
BLAST of rna-KK1_003895 vs. DB:Swiss
Match: PGLR1_PECCC (Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.062e-20
Identity = 97/332 (29.22%), Postives = 154/332 (46.39%), Query Frame = 1
Query:  259 WLTGSFDLISHLTLWLDKDAVILGSTNSDDWPVVDPLPSYGRGRELPGGRHKSLIYGRNLTDVVITGNNGTIDGQGSV--------WWNKFWN---KTLDYTRPHLVELMNSTGVLISNITFLNSPFWTIHPVYCSN--VIIRNVTILAPQSSPNTDGIDPDSSDNVCIEDCYISTGDDLISIKSGWDGYGISFGRPST-NINI-RRLIGKTTSAGIAIGSEMSGGVSEVHAEDIYVFDSRSAIRIKTSPGRGGYVRNVYISNMILANVDIAIRFTGLYGEHPDDTCDPNALPVIEKITIKDVTGEKVKRAGLIEGIKGDNFVNICLSNITL 1209
            +L+G   L S ++L +DK   +    N+  +   +  PS     +  G    + I   + T+  I G  GTIDGQG V        WW+   +   K L    P L+++  S    + N++ +NSP +  H V+           TI  P ++ NTDGIDP SS N+ I    ISTGDD ++IK+         GR  T NI+I     G  T  G++IGSE + GV  V  +D+ +  + + +RIK+     G V  V  SN+++ NV   I    +Y +      + + +P    IT KD+T +  K   ++ G      + + + N+ L
Sbjct:   78 FLSGPLSLPSGVSLLIDKGVTLRAVNNAKSF---ENAPSSCGVVDTNGKGCDAFITATSTTNSGIYGP-GTIDGQGGVKLQDKKVSWWDLAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNF--HVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAHSNISTGDDNVAIKA-------YKGRSETRNISILHNEFG--TGHGMSIGSE-TMGVYNVTVDDLIMTGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKK-----EGSNVPDWSDITFKDITSQ-TKGVVVLNGENAKKPIEVTMKNVKL 387          
BLAST of rna-KK1_003895 vs. DB:Swiss
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 2.816e-19
Identity = 102/346 (29.48%), Postives = 155/346 (44.80%), Query Frame = 1
Query:  118 PHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDDWPVVDPLPSYGRGRELPGGRHKSLIYG--RNLTDVVITGNNGTIDGQGSVWWNKFW--NKTLDYTR-PHLVELMNSTGVLISNITFLNSPFWTIHPVYCSNVIIRNVTILAPQSSPNTDGIDPDSSDNVCIEDCYISTGDDLISIKSGWDGYGISFGRPSTNINIRRLIGKTTSAGIAIGS----EMSGGVSEVHAEDIYVFDSRSAIRIKTSPGRGGYVRNVYISNMILANVDIAIRFTGLYGEHPDDTCDPNALPVIEKITIKDVTG 1128
            P +VS+++FGA GDG T +T+AF NA  +  + +  G   L VP G               +L K   + G  NS     +    S  + R       K +++    NL+  V  G+ G +DG G  WW      NK    T+ P  +   NS  +++ N+   N+    I    CSNV + NV + AP  SPNTDGI   ++ N+ + +  I TGDD ISI+SG           S N+ I   I      GI+IGS         VS V  +   +  + + +RIKT  G  G   N+   N+ + NV   I     Y +    T + +A+ V + +  +D++G
Sbjct:   65 PTTVSVSDFGAKGDGKTDDTQAFVNA--WKKACSSNGAVNLLVPKGN-------------TYLLKSIQLTGPCNSILTVQIFGTLSASQKRSDYKDISKWIMFDGVNNLS--VDGGDTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESG-----------SQNVQIND-ITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMDNVKNPIIIDQDYCDKSKCTTEKSAVQV-KNVVYRDISG 380          
The following BLAST results are available for this feature:
BLAST of rna-KK1_003895 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
PGLR_VITVI4.889e-15753.13Probable polygalacturonase OS=Vitis vinifera OX=29... [more]
PGLR3_ARATH1.145e-2731.18Probable polygalacturonase At3g15720 OS=Arabidopsi... [more]
PGLR2_CHAOB1.013e-2629.46Polygalacturonase OS=Chamaecyparis obtusa OX=13415... [more]
PGLR2_JUNAS5.128e-2328.12Polygalacturonase OS=Juniperus ashei OX=13101 GN=J... [more]
PGLR_RHIRD1.078e-2131.88Polygalacturonase OS=Rhizobium radiobacter OX=358 ... [more]
PGLR2_CRYJA2.060e-2127.40Polygalacturonase OS=Cryptomeria japonica OX=3369 ... [more]
PGLR2_MAIZE8.366e-2128.25Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE... [more]
PGLR1_MAIZE6.184e-2027.92Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE... [more]
PGLR1_PECCC8.062e-2029.22Endo-polygalacturonase OS=Pectobacterium carotovor... [more]
ADPG2_ARATH2.816e-1929.48Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX... [more]
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InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006626Parallel beta-helix repeatSMARTSM00710pbh1coord: 271..292
e-value: 4800.0
score: 2.4
coord: 298..319
e-value: 3100.0
score: 3.7
coord: 327..348
e-value: 2100.0
score: 5.0
coord: 237..269
e-value: 240.0
score: 10.5
coord: 210..236
e-value: 63.0
score: 12.4
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 22..419
e-value: 6.0E-119
score: 399.6
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 137..417
e-value: 2.4E-44
score: 151.7
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..29
score: 6.0
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 37..430

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_003895_Cc_Asha_v1.0 ID=rna-KK1_003895_Cc_Asha_v1.0; Name=rna-KK1_003895; organism=Cajanus cajan; type=mRNA; length=1398bp
ATGAAGAGACTTTCAACTTTAGTGGATGTGTTTCTGGTTCTTGCATTGTT
CAGTTGTAGCACATGGACAGTGTGGAGCAGCTCGTGCTGCAATCAGATAA
ACTTGAAGGAAATCCGACCTCACAGCGTCAGTATTACTGAATTTGGAGCT
GTTGGTGATGGGATCACTCTCAATACAAAAGCATTTCAAAATGCCATTTT
CTACCTAAATTCATTTGCGGACAAAGGTGGAGCCAAACTTTTTGTCCCAG
CTGGCCAGTGGTTAACTGGAAGCTTTGATCTCATCAGCCATCTAACTTTG
TGGTTGGACAAAGATGCAGTAATTCTTGGATCAACGAACTCTGACGACTG
GCCAGTTGTGGATCCTCTACCATCATACGGTCGTGGAAGGGAGTTGCCGG
GTGGAAGGCATAAAAGCCTCATTTATGGGCGCAATTTGACTGATGTTGTC
ATAACAGGTAACAATGGAACTATAGATGGTCAAGGGAGTGTCTGGTGGAA
CAAGTTTTGGAACAAAACACTAGACTACACACGTCCTCATTTGGTTGAGT
TGATGAATTCAACTGGGGTTCTCATTTCAAATATTACTTTCTTGAATTCA
CCATTTTGGACTATTCACCCTGTATATTGCAGCAATGTTATAATTCGGAA
TGTCACAATCCTTGCTCCTCAAAGCTCACCAAATACAGATGGCATTGATC
CAGATTCTTCAGACAATGTATGCATTGAAGACTGTTATATAAGCACTGGT
GATGATCTGATTTCCATCAAAAGCGGATGGGATGGATATGGGATTTCCTT
TGGTCGACCCAGTACAAATATTAACATCCGCAGACTGATTGGGAAAACAA
CGAGTGCAGGGATTGCTATTGGAAGTGAGATGTCTGGAGGTGTATCAGAA
GTTCATGCAGAAGATATTTACGTTTTTGACTCACGAAGTGCCATTAGAAT
AAAAACTTCTCCTGGCAGGGGTGGTTATGTTAGAAATGTCTATATCTCTA
ACATGATCTTGGCTAATGTAGATATTGCTATTAGGTTCACTGGTTTATAT
GGAGAACATCCAGATGACACTTGTGACCCAAATGCTTTACCGGTAATAGA
AAAAATTACTATCAAGGATGTCACAGGGGAAAAAGTCAAACGTGCTGGCC
TTATAGAGGGTATTAAAGGGGACAACTTTGTCAATATCTGCCTATCAAAC
ATCACCCTGAATGTGAGATCAAAAATTCCATGGAACTGCTCTTACGTTAA
AGGATACTCTGACTTGGTTTCACCTGAAGCTTGTGAGCCTCTCAAAGAGA
GAATATTCCCTGAGCATATTTCAGATTGTTACTATATACCAAACCACTTA
AAGAATTTGAGTAATCAAAATTCGGGTGCTTGGTTACTGTCATGGTAA
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protein sequence of rna-KK1_003895_Cc_Asha_v1.0

>rna-KK1_003895_Cc_Asha_v1.0 ID=rna-KK1_003895_Cc_Asha_v1.0; Name=rna-KK1_003895_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=465bp
MKRLSTLVDVFLVLALFSCSTWTVWSSSCCNQINLKEIRPHSVSITEFGA
VGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTL
WLDKDAVILGSTNSDDWPVVDPLPSYGRGRELPGGRHKSLIYGRNLTDVV
ITGNNGTIDGQGSVWWNKFWNKTLDYTRPHLVELMNSTGVLISNITFLNS
PFWTIHPVYCSNVIIRNVTILAPQSSPNTDGIDPDSSDNVCIEDCYISTG
DDLISIKSGWDGYGISFGRPSTNINIRRLIGKTTSAGIAIGSEMSGGVSE
VHAEDIYVFDSRSAIRIKTSPGRGGYVRNVYISNMILANVDIAIRFTGLY
GEHPDDTCDPNALPVIEKITIKDVTGEKVKRAGLIEGIKGDNFVNICLSN
ITLNVRSKIPWNCSYVKGYSDLVSPEACEPLKERIFPEHISDCYYIPNHL
KNLSNQNSGAWLLSW
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mRNA from alignment at Chr_11-CM003613.1:41942310..41946957-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_003895_Cc_Asha_v1.0 ID=rna-KK1_003895_Cc_Asha_v1.0; Name=rna-KK1_003895; organism=Cajanus cajan; type=mRNA; length=4648bp; location=Sequence derived from: Chr_11-CM003613.1:41942310..41946957- (Cajanus cajan
ATGAAGAGACTTTCAACTGTGAGTCTGTGTTTGGTTATTGCTTTTTATTC CCTCTACCTTTCCCCTTGAGAGGTCTCAATCCAATGTTACTTTTTGGTTT CCACTGTCAAGCTTAGCAGTGGGTTGAGTAGTAGGATTGTAAGATCTAAG AGCAAAATTTTTACACAGATCAAGAACAGCATTCATGGATTCTCCTCTGT CTACCTTAGTGTAATTTAATTTGTGTAACTTGCTATCACTCATGCTTGAA GAGGTGGTCAATGAAAACTGATTGGCCTTTGGTTTTCTACTTTTTCTGTT GCTTTTCCTTGTAGCTTAAAATATCTTCTTGCTTATTTAACTGTTTGGAG AAATGTAGCTGATCTGAGTGGATTTTCAACTCGTCAATTTGAAATTCTTC TATCATTCTTGTATTGCTAAAGATATTGTTCTTGTTAGAGTTGAAAAAGC ATGTGAAATGGTCCTCAAGGTTGTATAAAAGTTTATGTTTTCAACAATGA GGACTTTTCTAACTGATGGTGACATGTTTCTCTTGCAGTTAGTGGATGTG TTTCTGGTTCTTGCATTGTTCAGTTGTAGCACATGGACAGTGTGGAGCAG CTCGTGCTGCAATCAGATAAACTTGAAGGAAATCCGACCTCACAGCGTCA GTATTACTGAATTTGGAGCTGTTGGTGATGGGATCACTCTCAATACAAAA GCATTTCAAAATGCCATTTTCTACCTAAATTCATTTGCGGACAAAGGTGG AGCCAAACTTTTTGTCCCAGCTGGCCAGTGGTTAACTGGAAGCTTTGATC TCATCAGCCATCTAACTTTGTGGTTGGACAAAGATGCAGTAATTCTTGGA TCAACGGTAAGCTACTCATTGTAATAATATAGTAAAATGCAAGGAAAAGG AAGATTAGCATATCTGCCAAATGTGTTTGCTTTGCTGGCTTGTCTGCAAT GTAATTATGACATGATAAAATGTCACTTTCAGCAAAGACACAATGTTCCT AAGCTATGTTTCTTATGCATATTAATCAGTTTGGCAAATTTTTTCTTATA GTTAATTAATATGTACTTTCTGAGCTATATATGTGTTAATTTACGATGCA GATTTATTTTTACTGTTGAATTTTTGGCTTAAAAAATCTATTTATGTTAT ATGTGCTGACCTTACTGTCACATTTATGATATGTAACAAGTGAATTAAAT GCCATATCATGCTTGTTACAGAACTCTGACGACTGGCCAGTTGTGGATCC TCTACCATCATACGGTCGTGGAAGGGAGTTGCCGGGTGGAAGGCATAAAA GCCTCATTTATGGGCGCAATTTGACTGATGTTGTCATAACAGGTTGGTAA TTTTCAACGAGGTTAAGGATGAAAATTAAACTCATAGTAGTTTAACTTGT CATGACTTTGACAGGATATCTAATTTGATTAAGCATAAATAAAGATGGAT GTGGATAATATTTGATTTATTAATTCAGATATGCGAATAGTTATATATTT ATTATGCACCTTATACCTGTCTCATTTTAATTTTAAATTTTTAGAAATAA TTTTAAAAAAAAATTTACTTGATATTTATATAATTTTTATTTTATCTTAA ATTTATATTAAATGAAATTTAATATAATTTTGTAATTGTTATTCTATATT AAAAATTTTATTTGTCATATTGTTTACAAAAAATATTTAATTAAGTTCTG AGCGAATATTAGACAGGTATAAATATACTTAATACTTGGCAAAGATGGTG ATAAAACATAAATTTTATACTTGTCCGATGTGATACAATAATGAAAATAA AATCCGTATCCGTCCAACCACATTTTCATCCAAGAAATTATTTTCTATGC ATATATTTCAATCAATCATGATTTTTTCCCACCCAAAATTTTGCACCCTT TTCAGTTCTTTATCTTTATCTTCCTTTCATGCTAGTTGGTTGACCTTTGA ATTCTAAAAGGCATTTTTTATTTATTTATAAAAAGTAAGCTCAAACCATG TAGTTTTGAGTTGAAGATTAGGAGTAGATTACTCAACCTTTAATAATTCA ATTATAGATATACATATAGATATAGTTATAGATATAGATGTTATATATAG AGATGGAAGATCTACTTACTCTAAGAATAAGTATTAATGAACTTATTAAA CTCAATAACTCATATTTTGTATCAAATTTCAATGATCTAACCGTTAAATT AAAATTTCTTGATGCATATATTAAGTCTACAAATTTTTAATAAATTTGAT AATTATTTGATACCTCATTTCATTAATTCAAATTGACAGATAATCATAAA AATATTTTATATGTTGATTTGAATCTATATAACAAAATATCATATATTTT AAAAAATTTAAAAATTTATAAACATGACCTATACATTAAAAAATTTTAAC TTAATAATTGGATCGCTGAAATTTAATGTAGAAAATTAAAATAGAAAATA AATTATTAACCAGAGTACCTCTTCATAGATAGATATAAAGATACCCTTTG AGTTTAACATGTATAATGACATGATTATCTCTATGAAAGAGCAGGAAAAA ATTTAAAGACTATCCTATATTCAGTAATATTAAAATAAAATTAAGATTGG GAGATCATTATATTTCAAATAATCAATAAAGATTATTTGTGTGTTTAATT GACGTAATTAAATTTATTAAAAGCTAATAAATTTGTTTTATAATTGATAG AAAATGTTTGAATTATAAAAAGTATAAAAGTTTTTTAAAAAAAAAATTGG ATCCGAACTATATAGTTTTGAGAAAAAAATTTGAAAGAGACAATTTTACC TTCAATAATATACAAATATACATATAAATTTAGATATGTGAATAGATTTA TTATCTAAATACATGTGAACTCTTAAATTTAACATATATAATGACATAAT TATCTCTATAAAAGTGCGGAAAACTTTTTTAATAGACTATTCTAGATATA GTAATATTAAGATTACATTTTTTTGTAACAAGTTGATAAAAAAAGAAAAA TTATCTATCACATTTATTACTTTTTCTCTCTTTCATTCCCATGTCTGTCT TCCCTTCCAATGTGTATGCACCTGTAATGGGTGAATAAAGTTTTTTTATT TATTTACTTTTAATTTCAATTAATTGATTAACTGATGCCATGGGTATCCC AATGAAGGTAACAATGGAACTATAGATGGTCAAGGGAGTGTCTGGTGGAA CAAGTTTTGGAACAAAACACTAGACTACACACGTCCTCATTTGGTTGAGT TGATGAATTCAACTGGGGTTCTCATTTCAAATATTACTTTCTTGAATTCA CCATTTTGGACTATTCACCCTGTATATTGCAGGTTTGCTTCCTTAAGAAG AATTGAATTTATATTTCCATACTTATTTGTTGAACTTCGTTCACTTAAAT TACCATTTTAGAACTATGCAATAGTGAAACTTTCATGATTTAGGAGGAGA TTTAAGTCTGTTTTTCTGGATGAACAGCAATGTTATAATTCGGAATGTCA CAATCCTTGCTCCTCAAAGCTCACCAAATACAGATGGCATTGATCCAGGT GATTTTTCTCCCTTGAGCTGGAAAGTCATACCCTGACCTGTGTATTCCAC AATGCATAAGTATTCTTGATTGATTTTCAACAACCAAATGTTTTTTTTAG TTAGTGTTAATGCGATATCAAGTACTTGTCATGAATTGCTTTAAAGGGAA TTTTTCATATGGACCAAAGGAAGACTAAATTTGTAAAAAAAAAGTGGTGC AATACGTTAATCACCTAGCTGGATTAAGCTATTGTTGTTGTGTTGGTGGA GATGCTTGCGTTCATAGAAATAAAGCTAAGTATCTCCTACTGTAGTTGAC TTCTGTGCCCGCTAACTGACACTTAAAACTGCACCAATGTCCTTACCAAT TTTCTTTCAAAGCACTTGTCATATTCTCATATACACATTCTAATTGTTTG CAGATTCTTCAGACAATGTATGCATTGAAGACTGTTATATAAGCACTGGT GATGATCTGATTTCCATCAAAAGCGGATGGGATGGATATGGGATTTCCTT TGGTCGACCCAGTACAAATATTAACATCCGCAGACTGATTGGGAAAACAA CGAGTGCAGGGATTGCTATTGGAAGTGAGATGTCTGGAGGTGTATCAGAA GTTCATGCAGAAGATATTTACGTTTTTGACTCACGAAGTGCCATTAGAAT AAAAACTTCTCCTGGCAGGGGTGGTTATGTTAGAAATGTCTATATCTCTA ACATGATCTTGGCTAATGTAGATATTGCTATTAGGTTCACTGGTTTATAT GGAGAACATCCAGATGACACTTGTGACCCAAATGCTTTACCGGTAATAGA AAAAATTACTATCAAGGATGTCACAGGGGAAAAAGTCAAACGTGCTGGCC TTATAGAGGGTATTAAAGGGGACAACTTTGTCAATATCTGCCTATCAAAC ATCACCCTGAATGTGAGATCAAAAATTCCATGGAACTGCTCTTACGTTAA AGGATACTCTGACTTGGTTTCACCTGAAGCTTGTGAGCCTCTCAAAGAGA GAATATTCCCTGAGCATATTTCAGATTGTTACTATATACCAAACCACTTA AAGAATTTGAGTAATCAAAATTCGGGTGCTTGGTTACTGTCATGGTAA
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Coding sequence (CDS) from alignment at Chr_11-CM003613.1:41942310..41946957-

>rna-KK1_003895_Cc_Asha_v1.0 ID=rna-KK1_003895_Cc_Asha_v1.0; Name=rna-KK1_003895; organism=Cajanus cajan; type=CDS; length=2796bp; location=Sequence derived from: Chr_11-CM003613.1:41942310..41946957- (Cajanus cajan
ATGAAGAGACTTTCAACTATGAAGAGACTTTCAACTTTAGTGGATGTGTT
TCTGGTTCTTGCATTGTTCAGTTGTAGCACATGGACAGTGTGGAGCAGCT
CGTGCTGCAATCAGATAAACTTGAAGGAAATCCGACCTCACAGCGTCAGT
ATTACTGAATTTGGAGCTGTTGGTGATGGGATCACTCTCAATACAAAAGC
ATTTCAAAATGCCATTTTCTACCTAAATTCATTTGCGGACAAAGGTGGAG
CCAAACTTTTTGTCCCAGCTGGCCAGTGGTTAACTGGAAGCTTTGATCTC
ATCAGCCATCTAACTTTGTGGTTGGACAAAGATGCAGTAATTCTTGGATC
AACGTTAGTGGATGTGTTTCTGGTTCTTGCATTGTTCAGTTGTAGCACAT
GGACAGTGTGGAGCAGCTCGTGCTGCAATCAGATAAACTTGAAGGAAATC
CGACCTCACAGCGTCAGTATTACTGAATTTGGAGCTGTTGGTGATGGGAT
CACTCTCAATACAAAAGCATTTCAAAATGCCATTTTCTACCTAAATTCAT
TTGCGGACAAAGGTGGAGCCAAACTTTTTGTCCCAGCTGGCCAGTGGTTA
ACTGGAAGCTTTGATCTCATCAGCCATCTAACTTTGTGGTTGGACAAAGA
TGCAGTAATTCTTGGATCAACGAACTCTGACGACTGGCCAGTTGTGGATC
CTCTACCATCATACGGTCGTGGAAGGGAGTTGCCGGGTGGAAGGCATAAA
AGCCTCATTTATGGGCGCAATTTGACTGATGTTGTCATAACAGAACTCTG
ACGACTGGCCAGTTGTGGATCCTCTACCATCATACGGTCGTGGAAGGGAG
TTGCCGGGTGGAAGGCATAAAAGCCTCATTTATGGGCGCAATTTGACTGA
TGTTGTCATAACAGGTAACAATGGAACTATAGATGGTCAAGGGAGTGTCT
GGTGGAACAAGTTTTGGAACAAAACACTAGACTACACACGTCCTCATTTG
GTTGAGTTGATGAATTCAACTGGGGTTCTCATTTCAAATATTACTTTCTT
GAATTCACCATTTTGGACTATTCACCCTGTATATTGCAGGTAACAATGGA
ACTATAGATGGTCAAGGGAGTGTCTGGTGGAACAAGTTTTGGAACAAAAC
ACTAGACTACACACGTCCTCATTTGGTTGAGTTGATGAATTCAACTGGGG
TTCTCATTTCAAATATTACTTTCTTGAATTCACCATTTTGGACTATTCAC
CCTGTATATTGCAGCAATGTTATAATTCGGAATGTCACAATCCTTGCTCC
TCAAAGCTCACCAAATACAGATGGCATTGATCCAGCAATGTTATAATTCG
GAATGTCACAATCCTTGCTCCTCAAAGCTCACCAAATACAGATGGCATTG
ATCCAGATTCTTCAGACAATGTATGCATTGAAGACTGTTATATAAGCACT
GGTGATGATCTGATTTCCATCAAAAGCGGATGGGATGGATATGGGATTTC
CTTTGGTCGACCCAGTACAAATATTAACATCCGCAGACTGATTGGGAAAA
CAACGAGTGCAGGGATTGCTATTGGAAGTGAGATGTCTGGAGGTGTATCA
GAAGTTCATGCAGAAGATATTTACGTTTTTGACTCACGAAGTGCCATTAG
AATAAAAACTTCTCCTGGCAGGGGTGGTTATGTTAGAAATGTCTATATCT
CTAACATGATCTTGGCTAATGTAGATATTGCTATTAGGTTCACTGGTTTA
TATGGAGAACATCCAGATGACACTTGTGACCCAAATGCTTTACCGGTAAT
AGAAAAAATTACTATCAAGGATGTCACAGGGGAAAAAGTCAAACGTGCTG
GCCTTATAGAGGGTATTAAAGGGGACAACTTTGTCAATATCTGCCTATCA
AACATCACCCTGAATGTGAGATCAAAAATTCCATGGAACTGCTCTTACGT
TAAAGGATACTCTGACTTGGTTTCACCTGAAGCTTGTGAGCCTCTCAAAG
AGAGAATATTCCCTGAGCATATTTCAGATTGTTACTATATACCAAACCAC
TTAAAGAATTTGAGTAATCAAAATTCGGGTGCTTGGTTACTGTCATGGTA
AATTCTTCAGACAATGTATGCATTGAAGACTGTTATATAAGCACTGGTGA
TGATCTGATTTCCATCAAAAGCGGATGGGATGGATATGGGATTTCCTTTG
GTCGACCCAGTACAAATATTAACATCCGCAGACTGATTGGGAAAACAACG
AGTGCAGGGATTGCTATTGGAAGTGAGATGTCTGGAGGTGTATCAGAAGT
TCATGCAGAAGATATTTACGTTTTTGACTCACGAAGTGCCATTAGAATAA
AAACTTCTCCTGGCAGGGGTGGTTATGTTAGAAATGTCTATATCTCTAAC
ATGATCTTGGCTAATGTAGATATTGCTATTAGGTTCACTGGTTTATATGG
AGAACATCCAGATGACACTTGTGACCCAAATGCTTTACCGGTAATAGAAA
AAATTACTATCAAGGATGTCACAGGGGAAAAAGTCAAACGTGCTGGCCTT
ATAGAGGGTATTAAAGGGGACAACTTTGTCAATATCTGCCTATCAAACAT
CACCCTGAATGTGAGATCAAAAATTCCATGGAACTGCTCTTACGTTAAAG
GATACTCTGACTTGGTTTCACCTGAAGCTTGTGAGCCTCTCAAAGAGAGA
ATATTCCCTGAGCATATTTCAGATTGTTACTATATACCAAACCACTTAAA
GAATTTGAGTAATCAAAATTCGGGTGCTTGGTTACTGTCATGGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR006626PbH1
IPR012334Pectin_lyas_fold
IPR000743Glyco_hydro_28
IPR011050Pectin_lyase_fold/virulence
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process