rna-KK1_004574

Transcript Overview
Namerna-KK1_004574
Unique Namerna-KK1_004574_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length690
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_11-CM003613.1supercontigChr_11-CM003613.1:48324235..48324924 -Cajanus cajan Asha genome v1.0n/a
Chr_11-CM003613.1supercontigChr_11-CM003613.1:48324235..48324924 -Cajanus cajan Asha genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cccrR0342Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cccrR0470Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccpsR308Pisum sativum Cameor genome v1aPisum sativum
ccpsR346Pisum sativum Cameor genome v1aPisum sativum
ccpsR363Pisum sativum Cameor genome v1aPisum sativum
ccccL028Cajanus cajan Asha genome v1.0Cajanus cajan
caiccL0074Cicer arietinum ICC 4958 genome v2Cicer arietinum
ccpvR0524Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0587Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuR0543Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0576Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caiccL0914Cicer arietinum ICC 4958 genome v2Cicer arietinum
caccL0068Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL0986Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccL0059Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0283Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0544Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0734Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1042Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asccL0082Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asccL0319Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cctifR0382Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0469Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR0391Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0425Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0482Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0409Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvrvR0495Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvssR0428Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvuaR0457Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvuaR0509Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvssR0527Vicia sativa cv. Studenica genome v1.0Vicia sativa
canccL0069Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL0988Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjccL0214Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL0441Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carccL0074Cicer arietinum
carccL1054Cicer arietinum
ccccaR0531Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0659Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR0497Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0613Vigna umbellata FF25 genome v1.0Vigna umbellata

Orthologs
Gene/TranscriptAssemblySpecies
Vfaba.Hedin2.R1.4g242600.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-XM_004486137.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vfaba.Tiffany.R1.1g368120.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-XM_014652049.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-XM_014662285.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Va01G100580.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Cr_02537.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_03396Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-TanjilR_27198Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat4g004280.1Pisum sativum Cameor genome v1aPisum sativum
Vigun06g157300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Ca_00672Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-TanjilR_09363Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
jg39081.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun03g443500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Va09G054930.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vum_05G00722.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Phvul.003G081900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Cr_22193.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_22005.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
LR48_mrnaVigan09g194700Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vfaba.Tiffany.R1.4g186520.1Vicia faba cv. Tiffany genome v1.0Vicia faba
evm.model.Chr03.1076Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan01g322500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Ca_02253.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Phvul.006G145400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
jg20869.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Hedin2.R1.1g448800.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vum_01G04144.1Vigna umbellata FF25 genome v1.0Vigna umbellata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-KK1_017265Cajanus cajan Asha genome v1.0Cajanus cajan
Cc_v2.0_28112.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Cc_v2.0_19473.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_004574gene-KK1_004574_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_004574rna-KK1_004574_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_004574_Cc_Asha_v1.0rna-KK1_004574_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_004574_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:48324235..48324924rna-KK1_004574_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:48324235..48324924Cajanus cajanCDS
rna-KK1_004574_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:48324235..48324924rna-KK1_004574_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:48324235..48324924Cajanus cajanCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_004574_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:48324235..48324924rna-KK1_004574_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:48324235..48324924Cajanus cajanexon
rna-KK1_004574_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:48324235..48324924rna-KK1_004574_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:48324235..48324924Cajanus cajanexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-KK1_004574 vs.
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..93

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_004574_Cc_Asha_v1.0 ID=rna-KK1_004574_Cc_Asha_v1.0; Name=rna-KK1_004574; organism=Cajanus cajan; type=mRNA; length=690bp
ATGGACACCAAAAGAAGAAGCAAGAGCAACCCTTCCGCTTCACCTGAATT
CGAGTTCTGGATGGTTCGAAACCCCTCTTTCCCCCAACCCAACATTCTCT
CCGCCGATCAACTCATTGTCAACGGGGTCCTCCTTCCCCTCCACCTCGTC
AACAAACCCCACCCATCCCCATCCCCATCCACAACCACAACCACCACCTC
CAAGCGCTGGAAGGACATTTTCAGAAAGAAAAACGAGGCCCAGGAGAAGA
AGAAAGAGAAAGAGAAAAAAGGCAGCGTCGGCACAGGCGCTTCACCGGAG
CTCAACATCAACATCAACCTATGGCCCTTCTCCCGGAGCAGGTCAGCGGG
TACCCACCCCAAAGTAGCCCCCCCGTCCACCCGGAAAGCGAACAGCGCGC
CATGCTCGCGGAGCAATTCGGCCAGGAAGTGGCCCAGCAGTCCGGGCCGC
CCCGGAGTCCATCTAGGAAGGAGCAGCCCAGTTTGGCAGGTCCGGCGTCC
CAAGAATCCTGAAGCTGAAAAGCCCAAGCGGCGGAGCCCCAAAAGTAGGG
TTCTGAATTTGAATGTTCCGATGTGCATGGGTTACAAACATCACTTCAGC
TGCAGAAGCCCGGTTGAAGGAGCTGGAGGTATTAGAGCTTTTAACCTGCG
CACCCTCTTCACCAAGAAAACCGTTCTAACCTCTCACTAG
back to top

protein sequence of rna-KK1_004574_Cc_Asha_v1.0

>rna-KK1_004574_Cc_Asha_v1.0 ID=rna-KK1_004574_Cc_Asha_v1.0; Name=rna-KK1_004574_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=229bp
MDTKRRSKSNPSASPEFEFWMVRNPSFPQPNILSADQLIVNGVLLPLHLV
NKPHPSPSPSTTTTTTSKRWKDIFRKKNEAQEKKKEKEKKGSVGTGASPE
LNININLWPFSRSRSAGTHPKVAPPSTRKANSAPCSRSNSARKWPSSPGR
PGVHLGRSSPVWQVRRPKNPEAEKPKRRSPKSRVLNLNVPMCMGYKHHFS
CRSPVEGAGGIRAFNLRTLFTKKTVLTSH
back to top

mRNA from alignment at Chr_11-CM003613.1:48324235..48324924-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_004574_Cc_Asha_v1.0 ID=rna-KK1_004574_Cc_Asha_v1.0; Name=rna-KK1_004574; organism=Cajanus cajan; type=mRNA; length=690bp; location=Sequence derived from: Chr_11-CM003613.1:48324235..48324924- (Cajanus cajan
ATGGACACCAAAAGAAGAAGCAAGAGCAACCCTTCCGCTTCACCTGAATT
CGAGTTCTGGATGGTTCGAAACCCCTCTTTCCCCCAACCCAACATTCTCT
CCGCCGATCAACTCATTGTCAACGGGGTCCTCCTTCCCCTCCACCTCGTC
AACAAACCCCACCCATCCCCATCCCCATCCACAACCACAACCACCACCTC
CAAGCGCTGGAAGGACATTTTCAGAAAGAAAAACGAGGCCCAGGAGAAGA
AGAAAGAGAAAGAGAAAAAAGGCAGCGTCGGCACAGGCGCTTCACCGGAG
CTCAACATCAACATCAACCTATGGCCCTTCTCCCGGAGCAGGTCAGCGGG
TACCCACCCCAAAGTAGCCCCCCCGTCCACCCGGAAAGCGAACAGCGCGC
CATGCTCGCGGAGCAATTCGGCCAGGAAGTGGCCCAGCAGTCCGGGCCGC
CCCGGAGTCCATCTAGGAAGGAGCAGCCCAGTTTGGCAGGTCCGGCGTCC
CAAGAATCCTGAAGCTGAAAAGCCCAAGCGGCGGAGCCCCAAAAGTAGGG
TTCTGAATTTGAATGTTCCGATGTGCATGGGTTACAAACATCACTTCAGC
TGCAGAAGCCCGGTTGAAGGAGCTGGAGGTATTAGAGCTTTTAACCTGCG
CACCCTCTTCACCAAGAAAACCGTTCTAACCTCTCACTAG
back to top

Coding sequence (CDS) from alignment at Chr_11-CM003613.1:48324235..48324924-

>rna-KK1_004574_Cc_Asha_v1.0 ID=rna-KK1_004574_Cc_Asha_v1.0; Name=rna-KK1_004574; organism=Cajanus cajan; type=CDS; length=1380bp; location=Sequence derived from: Chr_11-CM003613.1:48324235..48324924- (Cajanus cajan
ATGGACACCAAAAGAAGAAGCAAGAGCAACCCTTCCGCTTCACCTGAATT
CGAGTTCTGGATGGTTCGAAACCCCTCTTTCCCCCAACCCAACATTCTCT
CCGCCGATCAACTCATTGTCAACGGGGTCCTCCTTCCCCTCCACCTCGTC
AACAAACCCCACCCATCCCCATCCCCATCCACAACCACAACCACCACCTC
CAAGCGCTGGAAGGACATTTTCAGAAAGAAAAACGAGGCCCAGGAGAAGA
AGAAAGAGAAAGAGAAAAAAGGCAGCGTCGGCACAGGCGCTTCACCGGAG
CTCAACATCAACATCAACCTATGGCCCTTCTCCCGGAGCAGGTCAGCGGG
TACCCACCCCAAAGTAGCCCCCCCGTCCACCCGGAAAGCGAACAGCGCGC
CATGCTCGCGGAGCAATTCGGCCAGGAAGTGGCCCAGCAGTCCGGGCCGC
CCCGGAGTCCATCTAGGAAGGAGCAGCCCAGTTTGGCAGGTCCGGCGTCC
CAAGAATCCTGAAGCTGAAAAGCCCAAGCGGCGGAGCCCCAAAAGTAGGG
TTCTGAATTTGAATGTTCCGATGTGCATGGGTTACAAACATCACTTCAGC
TGCAGAAGCCCGGTTGAAGGAGCTGGAGGTATTAGAGCTTTTAACCTGCG
CACCCTCTTCACCAAGAAAACCGTTCTAACCTCTCACTAGATGGACACCA
AAAGAAGAAGCAAGAGCAACCCTTCCGCTTCACCTGAATTCGAGTTCTGG
ATGGTTCGAAACCCCTCTTTCCCCCAACCCAACATTCTCTCCGCCGATCA
ACTCATTGTCAACGGGGTCCTCCTTCCCCTCCACCTCGTCAACAAACCCC
ACCCATCCCCATCCCCATCCACAACCACAACCACCACCTCCAAGCGCTGG
AAGGACATTTTCAGAAAGAAAAACGAGGCCCAGGAGAAGAAGAAAGAGAA
AGAGAAAAAAGGCAGCGTCGGCACAGGCGCTTCACCGGAGCTCAACATCA
ACATCAACCTATGGCCCTTCTCCCGGAGCAGGTCAGCGGGTACCCACCCC
AAAGTAGCCCCCCCGTCCACCCGGAAAGCGAACAGCGCGCCATGCTCGCG
GAGCAATTCGGCCAGGAAGTGGCCCAGCAGTCCGGGCCGCCCCGGAGTCC
ATCTAGGAAGGAGCAGCCCAGTTTGGCAGGTCCGGCGTCCCAAGAATCCT
GAAGCTGAAAAGCCCAAGCGGCGGAGCCCCAAAAGTAGGGTTCTGAATTT
GAATGTTCCGATGTGCATGGGTTACAAACATCACTTCAGCTGCAGAAGCC
CGGTTGAAGGAGCTGGAGGTATTAGAGCTTTTAACCTGCGCACCCTCTTC
ACCAAGAAAACCGTTCTAACCTCTCACTAG
back to top