rna-KK1_004591

Transcript Overview
Namerna-KK1_004591
Unique Namerna-KK1_004591_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length879
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_11-CM003613.1supercontigChr_11-CM003613.1:48433197..48434213 -Cajanus cajan Asha genome v1.0n/a
Chr_11-CM003613.1supercontigChr_11-CM003613.1:48433197..48434213 -Cajanus cajan Asha genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cccrR0470Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccpsR308Pisum sativum Cameor genome v1aPisum sativum
ccpsR363Pisum sativum Cameor genome v1aPisum sativum
ccpsR371Pisum sativum Cameor genome v1aPisum sativum
ccccL028Cajanus cajan Asha genome v1.0Cajanus cajan
caiccL0081Cicer arietinum ICC 4958 genome v2Cicer arietinum
ccpvR0524Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0587Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuR0543Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0576Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caiccL0936Cicer arietinum ICC 4958 genome v2Cicer arietinum
caccL0068Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL0986Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccL0059Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0283Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0544Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0734Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1049Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asccL0082Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asccL0319Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cctifR0382Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0469Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR0391Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0425Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0482Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0409Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvrvR0495Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvssR0428Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvuaR0457Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvuaR0509Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvssR0488Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvssR0493Vicia sativa cv. Studenica genome v1.0Vicia sativa
canccL0069Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL0988Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjccL0214Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL0441Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carccL0074Cicer arietinum
carccL1054Cicer arietinum
ccccaR0531Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0659Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR0497Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0613Vigna umbellata FF25 genome v1.0Vigna umbellata

Orthologs
Gene/TranscriptAssemblySpecies
evm.model.Chr03.1088Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-TanjilR_31730Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
evm.model.Chr06.1622Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan01g323800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigun03g442200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vfaba.Tiffany.R1.1g366760.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vum_05G00739.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-TanjilR_26418Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Ca_02208.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
jg48593.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Phvul.003G083200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vfaba.Tiffany.R1.4g185600.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vum_01G04129.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigun06g155600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_022786923.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-XM_004507588.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Va01G100450.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Phvul.006G143800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Ca_21811.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vfaba.Hedin2.R1.1g447160.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
LR48_mrnaVigan09g196600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Psat4g003320.1Pisum sativum Cameor genome v1aPisum sativum
rna-XM_004486151.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-TanjilR_27186Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_014651284.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Ca_00687Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Ca_03409Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Va09G054570.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
jg39102.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Cr_22180.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Cc_v2.0_19452.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-KK1_017237Cajanus cajan Asha genome v1.0Cajanus cajan
Cc_v2.0_28125.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_004591gene-KK1_004591_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_004591rna-KK1_004591_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_004591_Cc_Asha_v1.0rna-KK1_004591_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_004591_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:48433841..48434213rna-KK1_004591_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:48433841..48434213Cajanus cajanCDS
rna-KK1_004591_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:48433197..48433702rna-KK1_004591_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:48433197..48433702Cajanus cajanCDS
rna-KK1_004591_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:48433841..48434213rna-KK1_004591_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:48433841..48434213Cajanus cajanCDS
rna-KK1_004591_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:48433197..48433702rna-KK1_004591_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:48433197..48433702Cajanus cajanCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_004591_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:48433841..48434213rna-KK1_004591_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:48433841..48434213Cajanus cajanexon
rna-KK1_004591_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:48433197..48433702rna-KK1_004591_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:48433197..48433702Cajanus cajanexon
rna-KK1_004591_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:48433841..48434213rna-KK1_004591_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:48433841..48434213Cajanus cajanexon
rna-KK1_004591_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:48433197..48433702rna-KK1_004591_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:48433197..48433702Cajanus cajanexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-KK1_004591 vs.
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006502Protein of unknown function PDDEXK-likePFAMPF04720PDDEXK_6coord: 42..232
e-value: 9.7E-59
score: 199.0
IPR006502Protein of unknown function PDDEXK-likeTIGRFAMTIGR01615TIGR01615coord: 110..233
e-value: 4.6E-47
score: 157.1

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_004591_Cc_Asha_v1.0 ID=rna-KK1_004591_Cc_Asha_v1.0; Name=rna-KK1_004591; organism=Cajanus cajan; type=mRNA; length=879bp
ATGGGAAGGAATATTCCGGTGAGGTTTCCGAGGGTAGCGGCAGCCTTCGA
CGCTGATGTGGCACGCACGAGGCTCTGCGGGAGCACAGAGAGTGACTCGC
TCCGAGGCTCAGCTGATTTGTCAGATCTTGTGAATTCCTTCATGGAGGAG
AGAGAGGAAGAAGGAGAACAGCATCTTGTTGGAAATGATTCCTATCAAAA
AGTTTCCAACAAGAGGGAGATGTTGAAGGAAATATTCGTCCAAGGTGGGG
ATGCCAAACAAACTATTATTAAACAAGTTCAACTTGCATGGAGACTTCTT
GACCTAAACCAAAAATCATCCCAATTCAAACGTCAATTCATGTCTCACCT
CAGAGAGAGAGGCTTTGATGCTGGTCTTTGCAAATGCAAGTGGGAGAAAA
ATACAAGATTTCCGGCTGGTGACTACGAGTACATAGACGTCAATTTTGCA
GGAAACCGCTACATTGTTCAAGTTTCCCTTGTCTCAGAATTCGAAATAGC
TCGTCCCACAAACCAATATTCTTCGTTACTTGATGTTTTTCCTCCAATAT
TTGTTGGTAAATTGGAAGAGCTGAAGCAGGTTGTGAGGCTAATGTGCACT
GCTATTAAGGGCTCTATGAAAACCATGGAAATGTATATACCTCCGTGGAG
AAGAATTGGGTACATGCAAGCTAAGTGGTTTAGTGCTTACGAAAGAACAA
CTGACGAGGTTGTAACTAAAATGACATCATCACCTTTTTCCACTGCAAGG
TCCATTGAATTTGATGCAAGACCAGTGAAATCCTACAATTGTAGGGATGA
TTATGGGAGTAAGCCTCCATTTAATGTTTGTCATTTGACTAGTGCATTTT
GTACAGAAGGCCCTGGGATGCTATTATAG
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protein sequence of rna-KK1_004591_Cc_Asha_v1.0

>rna-KK1_004591_Cc_Asha_v1.0 ID=rna-KK1_004591_Cc_Asha_v1.0; Name=rna-KK1_004591_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=292bp
MGRNIPVRFPRVAAAFDADVARTRLCGSTESDSLRGSADLSDLVNSFMEE
REEEGEQHLVGNDSYQKVSNKREMLKEIFVQGGDAKQTIIKQVQLAWRLL
DLNQKSSQFKRQFMSHLRERGFDAGLCKCKWEKNTRFPAGDYEYIDVNFA
GNRYIVQVSLVSEFEIARPTNQYSSLLDVFPPIFVGKLEELKQVVRLMCT
AIKGSMKTMEMYIPPWRRIGYMQAKWFSAYERTTDEVVTKMTSSPFSTAR
SIEFDARPVKSYNCRDDYGSKPPFNVCHLTSAFCTEGPGMLL
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mRNA from alignment at Chr_11-CM003613.1:48433197..48434213-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_004591_Cc_Asha_v1.0 ID=rna-KK1_004591_Cc_Asha_v1.0; Name=rna-KK1_004591; organism=Cajanus cajan; type=mRNA; length=1017bp; location=Sequence derived from: Chr_11-CM003613.1:48433197..48434213- (Cajanus cajan
ATGGGAAGGAATATTCCGGTGAGGTTTCCGAGGGTAGCGGCAGCCTTCGA
CGCTGATGTGGCACGCACGAGGCTCTGCGGGAGCACAGAGAGTGACTCGC
TCCGAGGCTCAGCTGATTTGTCAGATCTTGTGAATTCCTTCATGGAGGAG
AGAGAGGAAGAAGGAGAACAGCATCTTGTTGGAAATGATTCCTATCAAAA
AGTTTCCAACAAGAGGGAGATGTTGAAGGAAATATTCGTCCAAGGTGGGG
ATGCCAAACAAACTATTATTAAACAAGTTCAACTTGCATGGAGACTTCTT
GACCTAAACCAAAAATCATCCCAATTCAAACGTCAATTCATGTCTCACCT
CAGAGAGAGAGGCTTTGATGCTGGTCACTACTCATCACCCAATTCACTCA
TCATATTTTCTCTATTCATATGCCAAATTACTAATTCTATGCTTTTCTTA
AAGTTTGTTAATTTATGCCAAATTATTAATATGCGCTGATTATTCTTACT
TTTATGCATAGGTCTTTGCAAATGCAAGTGGGAGAAAAATACAAGATTTC
CGGCTGGTGACTACGAGTACATAGACGTCAATTTTGCAGGAAACCGCTAC
ATTGTTCAAGTTTCCCTTGTCTCAGAATTCGAAATAGCTCGTCCCACAAA
CCAATATTCTTCGTTACTTGATGTTTTTCCTCCAATATTTGTTGGTAAAT
TGGAAGAGCTGAAGCAGGTTGTGAGGCTAATGTGCACTGCTATTAAGGGC
TCTATGAAAACCATGGAAATGTATATACCTCCGTGGAGAAGAATTGGGTA
CATGCAAGCTAAGTGGTTTAGTGCTTACGAAAGAACAACTGACGAGGTTG
TAACTAAAATGACATCATCACCTTTTTCCACTGCAAGGTCCATTGAATTT
GATGCAAGACCAGTGAAATCCTACAATTGTAGGGATGATTATGGGAGTAA
GCCTCCATTTAATGTTTGTCATTTGACTAGTGCATTTTGTACAGAAGGCC
CTGGGATGCTATTATAG
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Coding sequence (CDS) from alignment at Chr_11-CM003613.1:48433197..48434213-

>rna-KK1_004591_Cc_Asha_v1.0 ID=rna-KK1_004591_Cc_Asha_v1.0; Name=rna-KK1_004591; organism=Cajanus cajan; type=CDS; length=1758bp; location=Sequence derived from: Chr_11-CM003613.1:48433197..48434213- (Cajanus cajan
ATGGGAAGGAATATTCCGGTGAGGTTTCCGAGGGTAGCGGCAGCCTTCGA
CGCTGATGTGGCACGCACGAGGCTCTGCGGGAGCACAGAGAGTGACTCGC
TCCGAGGCTCAGCTGATTTGTCAGATCTTGTGAATTCCTTCATGGAGGAG
AGAGAGGAAGAAGGAGAACAGCATCTTGTTGGAAATGATTCCTATCAAAA
AGTTTCCAACAAGAGGGAGATGTTGAAGGAAATATTCGTCCAAGGTGGGG
ATGCCAAACAAACTATTATTAAACAAGTTCAACTTGCATGGAGACTTCTT
GACCTAAACCAAAAATCATCCCAATTCAAACGTCAATTCATGTCTCACCT
CAGAGAGAGAGGCTTTGATGCTGATGGGAAGGAATATTCCGGTGAGGTTT
CCGAGGGTAGCGGCAGCCTTCGACGCTGATGTGGCACGCACGAGGCTCTG
CGGGAGCACAGAGAGTGACTCGCTCCGAGGCTCAGCTGATTTGTCAGATC
TTGTGAATTCCTTCATGGAGGAGAGAGAGGAAGAAGGAGAACAGCATCTT
GTTGGAAATGATTCCTATCAAAAAGTTTCCAACAAGAGGGAGATGTTGAA
GGAAATATTCGTCCAAGGTGGGGATGCCAAACAAACTATTATTAAACAAG
TTCAACTTGCATGGAGACTTCTTGACCTAAACCAAAAATCATCCCAATTC
AAACGTCAATTCATGTCTCACCTCAGAGAGAGAGGCTTTGATGCTGGTCT
TTGCAAATGCAAGTGGGAGAAAAATACAAGATTTCCGGCTGGTGACTACG
AGTACATAGACGTCAATTTTGCAGGAAACCGCTACATTGTTCAAGTTTCC
CTTGTCTCAGAATTCGAAATAGCTCGTCCCACAAACCAATATTCTTCGTT
ACTTGATGTTTTTCCTCCAATATTTGTTGGTAAATTGGAAGAGCTGAAGC
AGGTTGTGAGGCTAATGTGCACTGCTATTAAGGGCTCTATGAAAACCATG
GAAATGTATATACCTCCGTGGAGAAGAATTGGGTACATGCAAGCTAAGTG
GTTTAGTGCTTACGAAAGAACAACTGACGAGGTTGTAACTAAAATGACAT
CATCACCTTTTTCCACTGCAAGGTCCATTGAATTTGATGCAAGACCAGTG
AAATCCTACAATTGTAGGGATGATTATGGGAGTAAGCCTCCATTTAATGT
TTGTCATTTGACTAGTGCATTTTGTACAGAAGGCCCTGGGATGCTATTAT
AGGTCTTTGCAAATGCAAGTGGGAGAAAAATACAAGATTTCCGGCTGGTG
ACTACGAGTACATAGACGTCAATTTTGCAGGAAACCGCTACATTGTTCAA
GTTTCCCTTGTCTCAGAATTCGAAATAGCTCGTCCCACAAACCAATATTC
TTCGTTACTTGATGTTTTTCCTCCAATATTTGTTGGTAAATTGGAAGAGC
TGAAGCAGGTTGTGAGGCTAATGTGCACTGCTATTAAGGGCTCTATGAAA
ACCATGGAAATGTATATACCTCCGTGGAGAAGAATTGGGTACATGCAAGC
TAAGTGGTTTAGTGCTTACGAAAGAACAACTGACGAGGTTGTAACTAAAA
TGACATCATCACCTTTTTCCACTGCAAGGTCCATTGAATTTGATGCAAGA
CCAGTGAAATCCTACAATTGTAGGGATGATTATGGGAGTAAGCCTCCATT
TAATGTTTGTCATTTGACTAGTGCATTTTGTACAGAAGGCCCTGGGATGC
TATTATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR006502PDDEXK-like