rna-KK1_003198

Transcript Overview
Namerna-KK1_003198
Unique Namerna-KK1_003198_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length882
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_11-CM003613.1supercontigChr_11-CM003613.1:34543696..34544577 -Cajanus cajan Asha genome v1.0n/a
Chr_11-CM003613.1supercontigChr_11-CM003613.1:34543696..34544577 -Cajanus cajan Asha genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cccrR0370Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccpsR328Pisum sativum Cameor genome v1aPisum sativum
caiccL0246Cicer arietinum ICC 4958 genome v2Cicer arietinum
ccpvR0473Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0582Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0594Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuR0474Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0570Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0578Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caccL0280Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL0435Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccL0737Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1143Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1408Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1513Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asccL0560Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asccL0686Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cctifR0437Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0491Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR0449Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0503Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0431Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvrvR0510Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvuaR0420Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvuaR0514Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvssR0511Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvssR0582Vicia sativa cv. Studenica genome v1.0Vicia sativa
canccL0270Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL0426Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjccL0586Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL0729Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL1070Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carccL0286Cicer arietinum
carccL0453Cicer arietinum
ccccaR0522Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0576Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0592Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR0518Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0597Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0624Vigna umbellata FF25 genome v1.0Vigna umbellata

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_014639202.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
LR48_mrnaVigan03g249300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vum_04G02591.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Cr_05453.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Va03G076290.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Ca_00860Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-TanjilR_19803Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat3g028440.1Pisum sativum Cameor genome v1aPisum sativum
Ca_07907.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
evm.model.Chr01.1723.1.62113177Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigun01g180300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_004494195.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Phvul.001G195900.3Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Cc_v2.0_07976.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_003198gene-KK1_003198_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_003198rna-KK1_003198_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_003198_Cc_Asha_v1.0rna-KK1_003198_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_003198_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34543696..34544577rna-KK1_003198_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34543696..34544577Cajanus cajanCDS
rna-KK1_003198_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34543696..34544577rna-KK1_003198_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34543696..34544577Cajanus cajanCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_003198_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34543696..34544577rna-KK1_003198_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34543696..34544577Cajanus cajanexon
rna-KK1_003198_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34543696..34544577rna-KK1_003198_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34543696..34544577Cajanus cajanexon


Homology
[Close]
BLAST of rna-KK1_003198 vs. DB:Swiss
Match: Y3567_ARATH (BTB/POZ domain-containing protein At3g05675 OS=Arabidopsis thaliana OX=3702 GN=At3g05675 PE=2 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 1.057e-115
Identity = 182/295 (61.69%), Postives = 228/295 (77.29%), Query Frame = 1 
Query:    1 MGLPAEPILARLQPVNQSAIINIFVSAIRFATSSPPQQMNDLKSSAQEQLEYMLTEDDDAPLLTADDNIKHEVKECVNRLFSRFNDSLIALYCGST-TESLFEAGNIMLFQSYLADLSWVCQILTKLEIMREFVEYWFDASEKIVKVLEQGNST-TEVLEIKLRAIEVTSKVLEAIGYGTVVLPTAKRLKVLKVWLPFVRVTKPLIDS-VTMDCVN-AMLLKIDGELWQSLESTFVSIILALPSGDQADVLTEWLDNEYMQYPDLTEAFEVWCYRSKVAKRRLSLPGDEHVMTMN 873
            +G  AEPILARLQPV+QSA++ IFVSA RFATSSPP  + D+KSSAQEQ+EYM+TEDDDAPLL AD+ +K EVK+CV  LF RF   L  +      +E + + G+   F+  L+D+ WV QILTK+E++R+FV  W D SEK+VKV+EQ  +T  E +EI+++ IEVT+KV+EAIGYGTV+LPTAKRL+++K+WLPFVR TKPL+DS V  D  N  +  KIDGE+WQ+LES+FVSIILALPS DQA++LTEWL    + YPDLTEAFEVWCYRSKVAKRRL L G E    M+
Sbjct:  151 IGSEAEPILARLQPVDQSAVLEIFVSAFRFATSSPPLLLGDIKSSAQEQIEYMITEDDDAPLLIADEEVKLEVKQCVKSLFVRFFQCLEEITLKPVESEVINKKGS---FRMVLSDMCWVFQILTKMEVVRDFVITWADISEKLVKVVEQLETTVVEAVEIRVKVIEVTAKVIEAIGYGTVILPTAKRLQMVKLWLPFVRNTKPLVDSPVREDEENDTVRYKIDGEIWQALESSFVSIILALPSADQAEILTEWLSKNGL-YPDLTEAFEVWCYRSKVAKRRLGLVGGEEENGMS 441
The following BLAST results are available for this feature:
BLAST of rna-KK1_003198 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
Y3567_ARATH1.057e-11561.69BTB/POZ domain-containing protein At3g05675 OS=Ara... [more]
back to top
Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_003198_Cc_Asha_v1.0 ID=rna-KK1_003198_Cc_Asha_v1.0; Name=rna-KK1_003198; organism=Cajanus cajan; type=mRNA; length=882bp
ATGGGATTACCAGCCGAGCCTATCCTAGCTAGACTTCAACCAGTTAACCA
GTCTGCTATCATAAACATCTTTGTCTCTGCCATCCGCTTTGCTACATCAT
CTCCACCCCAACAAATGAATGATCTTAAATCATCGGCACAAGAGCAACTT
GAGTACATGCTAACTGAAGATGATGATGCCCCTTTATTGACAGCTGATGA
CAACATAAAACATGAGGTAAAAGAATGTGTAAACAGACTATTTTCACGGT
TTAACGACTCATTAATAGCTTTATACTGTGGTTCCACCACTGAATCACTC
TTTGAGGCTGGAAATATTATGTTGTTTCAATCCTATTTGGCTGATTTGTC
ATGGGTTTGTCAAATACTAACTAAGTTGGAAATAATGAGAGAATTTGTTG
AATATTGGTTTGATGCATCAGAAAAGATTGTCAAGGTTCTTGAACAAGGA
AATTCTACAACTGAAGTCCTTGAGATAAAGTTACGGGCTATTGAGGTGAC
ATCAAAGGTTTTAGAGGCAATTGGGTATGGTACTGTTGTATTGCCAACTG
CAAAACGCCTTAAGGTTTTGAAAGTGTGGCTTCCATTTGTGAGGGTTACA
AAACCATTGATTGATTCTGTCACAATGGATTGTGTAAATGCCATGCTGCT
TAAAATAGATGGCGAATTGTGGCAATCCTTAGAATCCACTTTTGTCTCTA
TCATTCTTGCATTGCCATCGGGAGATCAGGCAGATGTTTTAACTGAGTGG
CTGGATAACGAGTATATGCAGTATCCAGACTTAACTGAGGCATTTGAAGT
ATGGTGTTATAGGTCCAAAGTTGCCAAGAGGAGACTATCATTGCCTGGGG
ATGAACATGTCATGACGATGAACATGTCATGA
back to top

protein sequence of rna-KK1_003198_Cc_Asha_v1.0

>rna-KK1_003198_Cc_Asha_v1.0 ID=rna-KK1_003198_Cc_Asha_v1.0; Name=rna-KK1_003198_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=293bp
MGLPAEPILARLQPVNQSAIINIFVSAIRFATSSPPQQMNDLKSSAQEQL
EYMLTEDDDAPLLTADDNIKHEVKECVNRLFSRFNDSLIALYCGSTTESL
FEAGNIMLFQSYLADLSWVCQILTKLEIMREFVEYWFDASEKIVKVLEQG
NSTTEVLEIKLRAIEVTSKVLEAIGYGTVVLPTAKRLKVLKVWLPFVRVT
KPLIDSVTMDCVNAMLLKIDGELWQSLESTFVSIILALPSGDQADVLTEW
LDNEYMQYPDLTEAFEVWCYRSKVAKRRLSLPGDEHVMTMNMS
back to top

mRNA from alignment at Chr_11-CM003613.1:34543696..34544577-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_003198_Cc_Asha_v1.0 ID=rna-KK1_003198_Cc_Asha_v1.0; Name=rna-KK1_003198; organism=Cajanus cajan; type=mRNA; length=882bp; location=Sequence derived from: Chr_11-CM003613.1:34543696..34544577- (Cajanus cajan
ATGGGATTACCAGCCGAGCCTATCCTAGCTAGACTTCAACCAGTTAACCA
GTCTGCTATCATAAACATCTTTGTCTCTGCCATCCGCTTTGCTACATCAT
CTCCACCCCAACAAATGAATGATCTTAAATCATCGGCACAAGAGCAACTT
GAGTACATGCTAACTGAAGATGATGATGCCCCTTTATTGACAGCTGATGA
CAACATAAAACATGAGGTAAAAGAATGTGTAAACAGACTATTTTCACGGT
TTAACGACTCATTAATAGCTTTATACTGTGGTTCCACCACTGAATCACTC
TTTGAGGCTGGAAATATTATGTTGTTTCAATCCTATTTGGCTGATTTGTC
ATGGGTTTGTCAAATACTAACTAAGTTGGAAATAATGAGAGAATTTGTTG
AATATTGGTTTGATGCATCAGAAAAGATTGTCAAGGTTCTTGAACAAGGA
AATTCTACAACTGAAGTCCTTGAGATAAAGTTACGGGCTATTGAGGTGAC
ATCAAAGGTTTTAGAGGCAATTGGGTATGGTACTGTTGTATTGCCAACTG
CAAAACGCCTTAAGGTTTTGAAAGTGTGGCTTCCATTTGTGAGGGTTACA
AAACCATTGATTGATTCTGTCACAATGGATTGTGTAAATGCCATGCTGCT
TAAAATAGATGGCGAATTGTGGCAATCCTTAGAATCCACTTTTGTCTCTA
TCATTCTTGCATTGCCATCGGGAGATCAGGCAGATGTTTTAACTGAGTGG
CTGGATAACGAGTATATGCAGTATCCAGACTTAACTGAGGCATTTGAAGT
ATGGTGTTATAGGTCCAAAGTTGCCAAGAGGAGACTATCATTGCCTGGGG
ATGAACATGTCATGACGATGAACATGTCATGA
back to top

Coding sequence (CDS) from alignment at Chr_11-CM003613.1:34543696..34544577-

>rna-KK1_003198_Cc_Asha_v1.0 ID=rna-KK1_003198_Cc_Asha_v1.0; Name=rna-KK1_003198; organism=Cajanus cajan; type=CDS; length=1764bp; location=Sequence derived from: Chr_11-CM003613.1:34543696..34544577- (Cajanus cajan
ATGGGATTACCAGCCGAGCCTATCCTAGCTAGACTTCAACCAGTTAACCA
GTCTGCTATCATAAACATCTTTGTCTCTGCCATCCGCTTTGCTACATCAT
CTCCACCCCAACAAATGAATGATCTTAAATCATCGGCACAAGAGCAACTT
GAGTACATGCTAACTGAAGATGATGATGCCCCTTTATTGACAGCTGATGA
CAACATAAAACATGAGGTAAAAGAATGTGTAAACAGACTATTTTCACGGT
TTAACGACTCATTAATAGCTTTATACTGTGGTTCCACCACTGAATCACTC
TTTGAGGCTGGAAATATTATGTTGTTTCAATCCTATTTGGCTGATTTGTC
ATGGGTTTGTCAAATACTAACTAAGTTGGAAATAATGAGAGAATTTGTTG
AATATTGGTTTGATGCATCAGAAAAGATTGTCAAGGTTCTTGAACAAGGA
AATTCTACAACTGAAGTCCTTGAGATAAAGTTACGGGCTATTGAGGTGAC
ATCAAAGGTTTTAGAGGCAATTGGGTATGGTACTGTTGTATTGCCAACTG
CAAAACGCCTTAAGGTTTTGAAAGTGTGGCTTCCATTTGTGAGGGTTACA
AAACCATTGATTGATTCTGTCACAATGGATTGTGTAAATGCCATGCTGCT
TAAAATAGATGGCGAATTGTGGCAATCCTTAGAATCCACTTTTGTCTCTA
TCATTCTTGCATTGCCATCGGGAGATCAGGCAGATGTTTTAACTGAGTGG
CTGGATAACGAGTATATGCAGTATCCAGACTTAACTGAGGCATTTGAAGT
ATGGTGTTATAGGTCCAAAGTTGCCAAGAGGAGACTATCATTGCCTGGGG
ATGAACATGTCATGACGATGAACATGTCATGAATGGGATTACCAGCCGAG
CCTATCCTAGCTAGACTTCAACCAGTTAACCAGTCTGCTATCATAAACAT
CTTTGTCTCTGCCATCCGCTTTGCTACATCATCTCCACCCCAACAAATGA
ATGATCTTAAATCATCGGCACAAGAGCAACTTGAGTACATGCTAACTGAA
GATGATGATGCCCCTTTATTGACAGCTGATGACAACATAAAACATGAGGT
AAAAGAATGTGTAAACAGACTATTTTCACGGTTTAACGACTCATTAATAG
CTTTATACTGTGGTTCCACCACTGAATCACTCTTTGAGGCTGGAAATATT
ATGTTGTTTCAATCCTATTTGGCTGATTTGTCATGGGTTTGTCAAATACT
AACTAAGTTGGAAATAATGAGAGAATTTGTTGAATATTGGTTTGATGCAT
CAGAAAAGATTGTCAAGGTTCTTGAACAAGGAAATTCTACAACTGAAGTC
CTTGAGATAAAGTTACGGGCTATTGAGGTGACATCAAAGGTTTTAGAGGC
AATTGGGTATGGTACTGTTGTATTGCCAACTGCAAAACGCCTTAAGGTTT
TGAAAGTGTGGCTTCCATTTGTGAGGGTTACAAAACCATTGATTGATTCT
GTCACAATGGATTGTGTAAATGCCATGCTGCTTAAAATAGATGGCGAATT
GTGGCAATCCTTAGAATCCACTTTTGTCTCTATCATTCTTGCATTGCCAT
CGGGAGATCAGGCAGATGTTTTAACTGAGTGGCTGGATAACGAGTATATG
CAGTATCCAGACTTAACTGAGGCATTTGAAGTATGGTGTTATAGGTCCAA
AGTTGCCAAGAGGAGACTATCATTGCCTGGGGATGAACATGTCATGACGA
TGAACATGTCATGA
back to top