rna-KK1_003215

Transcript Overview
Namerna-KK1_003215
Unique Namerna-KK1_003215_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length1119
ProductMADS-box transcription factor PHERES 2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_11-CM003613.1supercontigChr_11-CM003613.1:34675539..34676708 +Cajanus cajan Asha genome v1.0n/a
Chr_11-CM003613.1supercontigChr_11-CM003613.1:34675539..34676708 +Cajanus cajan Asha genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cccrR0370Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccpsR328Pisum sativum Cameor genome v1aPisum sativum
caiccL0246Cicer arietinum ICC 4958 genome v2Cicer arietinum
ccpvR0473Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0582Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0594Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuR0474Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0570Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0578Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caccL0280Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL0435Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asccL0560Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asccL0686Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cctifR0437Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0491Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR0449Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0503Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0431Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvrvR0510Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvuaR0420Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvuaR0504Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvuaR0514Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvssR0511Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvssR0582Vicia sativa cv. Studenica genome v1.0Vicia sativa
canccL0270Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL0426Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjccL0586Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL0729Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL1070Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carccL0286Cicer arietinum
carccL0453Cicer arietinum
ccccaR0522Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0576Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0592Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR0518Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0597Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0624Vigna umbellata FF25 genome v1.0Vigna umbellata

Orthologs
Gene/TranscriptAssemblySpecies
Va03G076420.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Tiffany.R1.5g124120.1Vicia faba cv. Tiffany genome v1.0Vicia faba
LR48_mrnaVigan03g250500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
jg31608.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Phvul.001G196900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigun01g181200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vfaba.Hedin2.R1.5g154800.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
evm.model.Chr01.1732Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Cc_v2.0_07985.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_003215gene-KK1_003215_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_003215rna-KK1_003215_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_003215_Cc_Asha_v1.0rna-KK1_003215_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_003215_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34675539..34676478rna-KK1_003215_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34675539..34676478Cajanus cajanexon
rna-KK1_003215_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34675539..34676478rna-KK1_003215_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34675539..34676478Cajanus cajanexon
rna-KK1_003215_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34676530..34676708rna-KK1_003215_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34676530..34676708Cajanus cajanexon
rna-KK1_003215_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34676530..34676708rna-KK1_003215_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34676530..34676708Cajanus cajanexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_003215_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34675539..34676478rna-KK1_003215_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34675539..34676478Cajanus cajanCDS
rna-KK1_003215_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34675539..34676478rna-KK1_003215_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34675539..34676478Cajanus cajanCDS
rna-KK1_003215_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34676530..34676708rna-KK1_003215_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34676530..34676708Cajanus cajanCDS
rna-KK1_003215_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34676530..34676708rna-KK1_003215_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34676530..34676708Cajanus cajanCDS


Homology
[Close]
BLAST of rna-KK1_003215 vs. DB:Swiss
Match: PHE2_ARATH (MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana OX=3702 GN=PHE2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.569e-20
Identity = 43/150 (28.67%), Postives = 82/150 (54.67%), Query Frame = 1 
Query:   10 RKKAAQNLIEDFVTRKTCYNKRRASLLKKMEDLTTLCAVDSCAIIDGPGDDVPTVWPSHDKARELLDKFENAPLTDRWRKNVTPQIYVEQKNKKIENQLAMLKEKNDGKDMSIFMHKIHHDGKSLSDFDASDISRLLCYVEGKLKGVREK 459
            ++K   +LIE+ V+RKT + KR+  + KK+ +L TLC V++CA++  P + +P  WPS +   +++ KF    + DR +K V  + ++ Q+  K + QL  L+++N    +   M        ++ + D  D+  L  Y++  L G+  +
Sbjct:    2 KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSREGVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCLKGETNVYNLDGRDLQDLSLYIDKYLNGLTRR 151
[Close]
BLAST of rna-KK1_003215 vs. DB:Swiss
Match: AGL36_ARATH (Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana OX=3702 GN=AGL36 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.649e-17
Identity = 49/156 (31.41%), Postives = 83/156 (53.21%), Query Frame = 1 
Query:   13 KKAAQNLIEDFVTRKTCYNKRRASLLKKMEDLTTLCAVDSCAIIDGPGDDVPTVWPSHDKARELLDKFENAPLTDRWRKNVTPQIYVEQKNKKIENQLAMLKEKNDGKDMSIFMH--------KIHHDGKSLSDFDASDISRLLCYVEGKLKGVRE 456
            KK   +LI +  +RKT + KR+  + KK+ +L+TLC V +CA+I  P   VP  WPS + A+++  +F   P T R +K +  + Y+ ++  K + QL  L  +N    +  FM         + H+D K L D   S I+  L  + G+++ ++E
Sbjct:    2 KKVKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREGAKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQVRRFMFDCVEGKMSQYHYDAKDLQDLQ-SCINLYLDQLNGRIESIKE 156
[Close]
BLAST of rna-KK1_003215 vs. DB:Swiss
Match: AGL90_ARATH (Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana OX=3702 GN=AGL90 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.553e-17
Identity = 49/155 (31.61%), Postives = 81/155 (52.26%), Query Frame = 1 
Query:   13 KKAAQNLIEDFVTRKTCYNKRRASLLKKMEDLTTLCAVDSCAIIDGPGDDVPTVWPSHDKARELLDKFENAPLTDRWRKNVTPQIYVEQKNKKIENQLAMLKEKNDGKDMSIFMHKIHHDGKSLSDFDASDISRLL-CY------VEGKLKGVRE 456
            KK   +LI +  +RKT + KR+  + KK+ +L+TLC V +CA+I  P   VP  WPS + A+++  KF   P T R RK +  + ++ ++  K + QL  L  +N    +  FM        S   +DA D+  LL C       + G+++ ++E
Sbjct:    2 KKVKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREGAKKVASKFLEMPRTARTRKMMDQETHLMERITKAKEQLKNLAAENRELQVRRFMFDCVEGKMSQYRYDAKDLQDLLSCMNLYLDQLNGRIESIKE 156
[Close]
BLAST of rna-KK1_003215 vs. DB:Swiss
Match: PHE1_ARATH (MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana OX=3702 GN=PHE1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.081e-15
Identity = 45/157 (28.66%), Postives = 75/157 (47.77%), Query Frame = 1 
Query:   10 RKKAAQNLIEDFVTRKTCYNKRRASLLKKMEDLTTLCAVDSCAIIDGPGDDVPTVWPSHDKARELLDKFENAPLTDRWRKNVTPQIYVEQKNKKIENQLAMLKEKNDGKDMSIFMHKIHHDGKSLSDFDASDISRLLCYVEGKLKGVREKTGHTKHH 480
            R K   + IE+   RKT + KR+  +LKK  +L TLC VD+CA+I  P + +   WPS +   E++ KF    + DR +K V  + ++ Q+  K   +L  L+++N    +   M         +S     D+  L  ++   L GV  +    K +
Sbjct:    2 RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSREGVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCLKGEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKEN 158
[Close]
BLAST of rna-KK1_003215 vs. DB:Swiss
Match: AGL86_ARATH (Agamous-like MADS-box protein AGL86 OS=Arabidopsis thaliana OX=3702 GN=AGL86 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.224e-15
Identity = 41/141 (29.08%), Postives = 73/141 (51.77%), Query Frame = 1 
Query:   10 RKKAAQNLIEDFVTRKTCYNKRRASLLKKMEDLTTLCAVDSCAIIDGPGDDVPTVWPSHDKARELLDKFENAPLTDRWRKNVTPQIYVEQKNKKIENQLAMLKEKNDGKDMSIFMHKIHHDGKSLSDFDASDISRLLCYVE 432
            R K   +LI +  +R+T + KR+  +  K+ +LTTLC V +CA+I  P ++ P VWPS +  +E +  F   P T++ +  ++ + Y++ K  K   +L  L+ +N    +  FM        S   + A D+  L  Y++
Sbjct:    2 RSKIKLSLIANKTSRRTTFRKRKGGITNKLHELTTLCGVKACAVISSPYEN-PVVWPSTEGVQEAVSMFMERPATEQSKLMMSHETYLQDKITKETKKLESLRRENRESQLRQFMFDCVEGKMSEHQYGARDLQDLSLYID 141
[Close]
BLAST of rna-KK1_003215 vs. DB:Swiss
Match: AGL92_ARATH (Agamous-like MADS-box protein AGL92 OS=Arabidopsis thaliana OX=3702 GN=AGL92 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.382e-15
Identity = 43/150 (28.67%), Postives = 77/150 (51.33%), Query Frame = 1 
Query:   10 RKKAAQNLIEDFVTRKTCYNKRRASLLKKMEDLTTLCAVDSCAIIDGPGDDVPTVWPSHDKARELLDKFENAPLTDRWRKNVTPQIYVEQKNKKIENQLAMLKEKNDGKDMSIFMHKIHHDGKSLSDFDASDISRLLCYVEGKLKGVREK 459
            R K    LI D   R+  + KR A + KK+ +LTTLC + +CA+I  P ++ PTVWPS +  +E++ +F   P T+R +  ++ + ++  +  K +N+L  L+ +N    +  FM        S   + A D+  L  + +  L  +  +
Sbjct:    2 RTKTKLVLIPDRHFRRATFRKRNAGIRKKLHELTTLCDIKACAVIYSPFEN-PTVWPSTEGVQEVISEFMEKPATERSKTMMSHETFLRDQITKEQNKLESLRRENRETQLKHFMFDCVGGKMSEQQYGARDLQDLSLFTDQYLNQLNAR 150
[Close]
BLAST of rna-KK1_003215 vs. DB:Swiss
Match: AGL80_ARATH (Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.128e-9
Identity = 42/150 (28.00%), Postives = 76/150 (50.67%), Query Frame = 1 
Query:   10 RKKAAQNLIEDFVTRKTCYNKRRASLLKKMEDLTTLCAVDSCAIIDGPGDDVPTVWPSHDKARELLDKFENAPLTDRWRKNVTPQIYVEQKNKKIENQLAMLKEKNDGKDMSIFMHKIHHDGKSLSDFDASDISRLLCYVEGKLKGVREK 459
            RKK     I +  +RK  + KR+  L+KK+ +L+TLC + +CAII  P D  P VWPS+   + ++ +F   P  D+ +K V  + +++Q+  K    L   ++ +   +M+  M +       +   +  D++ L   +E  LK V  +
Sbjct:    3 RKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPSNSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQCLIGNMEMFHLNIVDLNDLGYMIEQYLKDVNRR 152
[Close]
BLAST of rna-KK1_003215 vs. DB:Swiss
Match: AGL82_ARATH (Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana OX=3702 GN=AGL82 PE=1 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.032e-7
Identity = 37/111 (33.33%), Postives = 59/111 (53.15%), Query Frame = 1 
Query:   49 TRKTCYNKRRASLLKKMEDLTTLCAVDSCAIIDGP--GDDV----PTVWPSHD-KARELLDKFENAPLTDRWRKNVTPQIYVE----------QKNKKIENQLAMLKEKND 330
            TR T Y KR+ASL KK ++ +TLC V++C I+ GP    DV    P +WP  + K R ++ K+++  ++   RK    + +V           +K  K EN+ +  +EK D
Sbjct:   16 TRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIWPKDETKVRAIIRKYKDT-VSTSCRKETNVETFVNDVGKGNEVVTKKRVKRENKYSSWEEKLD 125
The following BLAST results are available for this feature:
BLAST of rna-KK1_003215 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 8
Match NameE-valueIdentityDescription
PHE2_ARATH2.569e-2028.67MADS-box transcription factor PHERES 2 OS=Arabidop... [more]
AGL36_ARATH2.649e-1731.41Agamous-like MADS-box protein AGL36 OS=Arabidopsis... [more]
AGL90_ARATH7.553e-1731.61Agamous-like MADS-box protein AGL90 OS=Arabidopsis... [more]
PHE1_ARATH1.081e-1528.66MADS-box transcription factor PHERES 1 OS=Arabidop... [more]
AGL86_ARATH1.224e-1529.08Agamous-like MADS-box protein AGL86 OS=Arabidopsis... [more]
AGL92_ARATH2.382e-1528.67Agamous-like MADS-box protein AGL92 OS=Arabidopsis... [more]
AGL80_ARATH2.128e-928.00Agamous-like MADS-box protein AGL80 OS=Arabidopsis... [more]
AGL82_ARATH1.032e-733.33Agamous-like MADS-box protein AGL82 OS=Arabidopsis... [more]
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InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 2..61
e-value: 3.2E-7
score: 40.0
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 12..52
e-value: 4.7E-10
score: 38.8
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 2..48
score: 11.563
IPR036879Transcription factor, MADS-box superfamilyGENE3D3.40.1810.10coord: 15..99
e-value: 3.8E-7
score: 32.0
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILY55455SRF-likecoord: 4..94
IPR033897MADS SRF-likeCDDcd00266MADS_SRF_likecoord: 3..85
e-value: 1.61869E-17
score: 74.6039

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_003215_Cc_Asha_v1.0 ID=rna-KK1_003215_Cc_Asha_v1.0; Name=rna-KK1_003215; organism=Cajanus cajan; type=mRNA; length=1119bp
ATGCCTAGGAGAAAGAAAGCGGCACAAAATCTGATTGAGGATTTTGTGAC
AAGAAAAACTTGCTACAACAAAAGAAGGGCAAGTTTGTTGAAGAAGATGG
AGGACCTTACCACTCTTTGTGCTGTAGATTCATGCGCAATCATCGATGGT
CCTGGTGATGATGTCCCTACTGTGTGGCCATCTCATGACAAGGCTAGAGA
GCTTCTCGACAAGTTTGAGAATGCTCCATTGACGGATCGGTGGAGAAAAA
ACGTTACACCACAGATTTATGTTGAGCAGAAGAATAAGAAGATTGAAAAT
CAACTTGCCATGCTCAAGGAGAAGAATGATGGGAAAGACATGTCAATTTT
CATGCACAAAATCCACCATGATGGCAAGTCCTTGTCTGATTTTGACGCTA
GTGATATATCTCGTTTACTTTGTTATGTGGAGGGGAAACTAAAGGGTGTT
AGAGAGAAAACTGGCCATACTAAACATCATGAGTTGTCTCCTAATCCTCC
AACACCGCCAGTTTCTTGTCCTCTAAAGAATGACATTGGTTCACAGCCCA
ACACAGATGAACCAGTTTTCGAACAATCAACCTTAGATTTAAAGAAAGAA
GATGCTACGATGAATAATGGTGTTGATAACAATATAGGGAGCAACAACAA
CATGGGGCTGCCACCTCCACCACATACACATCTTGGTGATGTTGATATGG
TGCTGCATCAAGATCAAGTCAATTTTGAAGGCTTCAATCATGGTGATGTT
GACATGGTGTTGCCTCCAGGCAATTTTGGAGGCCTCATTGATGAAAGTGG
TTCATCTGGGGTGTTGCCTCAAGGCAATTTTACAGGTCTCAATGGTAATA
GTGATTCAGGGTTTTTGTATGGAAGCTATTTTGGTGAAATTGGAGGCAGT
GACTTATGGCCATCTTATGGAAATTTTGGAGGCACAATTGGGCAGCATGA
TGAAAATCAAGGAGGGTCCATTAACAATATAGGGTTATGGGGTCATCAAA
GCAACTTTGGAGCCAACAATGATGCTGTTGCTGTGGGCAGATCATCCAAT
TATCCAAACTTTGTGGAAGGGAGTGATATTGAATGGCCTACATTTGAAGG
ATTTTTTTCCTCCAAGTGA
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protein sequence of rna-KK1_003215_Cc_Asha_v1.0

>rna-KK1_003215_Cc_Asha_v1.0 ID=rna-KK1_003215_Cc_Asha_v1.0; Name=rna-KK1_003215_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=372bp
MPRRKKAAQNLIEDFVTRKTCYNKRRASLLKKMEDLTTLCAVDSCAIIDG
PGDDVPTVWPSHDKARELLDKFENAPLTDRWRKNVTPQIYVEQKNKKIEN
QLAMLKEKNDGKDMSIFMHKIHHDGKSLSDFDASDISRLLCYVEGKLKGV
REKTGHTKHHELSPNPPTPPVSCPLKNDIGSQPNTDEPVFEQSTLDLKKE
DATMNNGVDNNIGSNNNMGLPPPPHTHLGDVDMVLHQDQVNFEGFNHGDV
DMVLPPGNFGGLIDESGSSGVLPQGNFTGLNGNSDSGFLYGSYFGEIGGS
DLWPSYGNFGGTIGQHDENQGGSINNIGLWGHQSNFGANNDAVAVGRSSN
YPNFVEGSDIEWPTFEGFFSSK
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mRNA from alignment at Chr_11-CM003613.1:34675539..34676708+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_003215_Cc_Asha_v1.0 ID=rna-KK1_003215_Cc_Asha_v1.0; Name=rna-KK1_003215; organism=Cajanus cajan; type=mRNA; length=1170bp; location=Sequence derived from: Chr_11-CM003613.1:34675539..34676708+ (Cajanus cajan
ATGCCTAGGAGAAAGAAAGCGGCACAAAATCTGATTGAGGATTTTGTGAC
AAGAAAAACTTGCTACAACAAAAGAAGGGCAAGTTTGTTGAAGAAGATGG
AGGACCTTACCACTCTTTGTGCTGTAGATTCATGCGCAATCATCGATGGT
CCTGGTGATGATGTCCCTACTGTGTGGCCATCTCATGACAAGGCTAGAGA
GCTTCTCGACAAGTTTGAGAATGCTCCATTGACGGATCGGTGGAGAAAAA
ACGTTACACCACAGATTTATGTTGAGCAGAAGAATAAGAAGATTGAAAAT
CAACTTGCCATGCTCAAGGAGAAGAATGATGGGAAAGACATGTCAATTTT
CATGCACAAAATCCACCATGATGGCAAGTCCTTGTCTGATTTTGACGCTA
GTGATATATCTCGTTTACTTTGTTATGTGGAGGGGAAACTAAAGGGTGTT
AGAGAGAAAACTGGCCATACTAAACATCATGAGTTGTCTCCTAATCCTCC
AACACCGCCAGTTTCTTGTCCTCTAAAGAATGACATTGGTTCACAGCCCA
ACACAGATGAACCAGTTTTCGAACAATCAACCTTAGATTTAAAGAAAGAA
GATGCTACGATGAATAATGGTGTTGATAACAATATAGGGAGCAACAACAA
CATGGGGCTGCCACCTCCACCACATACACATCTTGGTGATGTTGATATGG
TGCTGCATCAAGATCAAGTCAATTTTGAAGGCTTCAATCATGGTGATGTT
GACATGGTGTTGCCTCCAGGCAATTTTGGAGGCCTCATTGATGAAAGTGG
TTCATCTGGGGTGTTGCCTCAAGGCAATTTTACAGGTCTCAATGGTAATA
GTGATTCAGGGTTTTTGTATGGAAGCTATTTTGGTGAAATTGGAGGCAGT
GACTTATGGCCATCTTATGGAAATTTTGGAGGCACAATTGGTAAAAGTGA
TATGATCCAAGGCAACATTAGTGGAACTTTCTCAGGAACAGGGCAGCATG
ATGAAAATCAAGGAGGGTCCATTAACAATATAGGGTTATGGGGTCATCAA
AGCAACTTTGGAGCCAACAATGATGCTGTTGCTGTGGGCAGATCATCCAA
TTATCCAAACTTTGTGGAAGGGAGTGATATTGAATGGCCTACATTTGAAG
GATTTTTTTCCTCCAAGTGA
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Coding sequence (CDS) from alignment at Chr_11-CM003613.1:34675539..34676708+

>rna-KK1_003215_Cc_Asha_v1.0 ID=rna-KK1_003215_Cc_Asha_v1.0; Name=rna-KK1_003215; organism=Cajanus cajan; type=CDS; length=2238bp; location=Sequence derived from: Chr_11-CM003613.1:34675539..34676708+ (Cajanus cajan
ATGCCTAGGAGAAAGAAAGCGGCACAAAATCTGATTGAGGATTTTGTGAC
AAGAAAAACTTGCTACAACAAAAGAAGGGCAAGTTTGTTGAAGAAGATGG
AGGACCTTACCACTCTTTGTGCTGTAGATTCATGCGCAATCATCGATGGT
CCTGGTGATGATGTCCCTACTGTGTGGCCATCTCATGACAAGGCTAGAGA
GCTTCTCGACAAGTTTGAGAATGCTCCATTGACGGATCGGTGGAGAAAAA
ACGTTACACCACAGATTTATGTTGAGCAGAAGAATAAGAAGATTGAAAAT
CAACTTGCCATGCTCAAGGAGAAGAATGATGGGAAAGACATGTCAATTTT
CATGCACAAAATCCACCATGATGGCAAGTCCTTGTCTGATTTTGACGCTA
GTGATATATCTCGTTTACTTTGTTATGTGGAGGGGAAACTAAAGGGTGTT
AGAGAGAAAACTGGCCATACTAAACATCATGAGTTGTCTCCTAATCCTCC
AACACCGCCAGTTTCTTGTCCTCTAAAGAATGACATTGGTTCACAGCCCA
ACACAGATGAACCAGTTTTCGAACAATCAACCTTAGATTTAAAGAAAGAA
GATGCTACGATGAATAATGGTGTTGATAACAATATAGGGAGCAACAACAA
CATGGGGCTGCCACCTCCACCACATACACATCTTGGTGATGTTGATATGG
TGCTGCATCAAGATCAAGTCAATTTTGAAGGCTTCAATCATGGTGATGTT
GACATGGTGTTGCCTCCAGGCAATTTTGGAGGCCTCATTGATGAAAGTGG
TTCATCTGGGGTGTTGCCTCAAGGCAATTTTACAGGTCTCAATGGTAATA
GTGATTCAGGGTTTTTGTATGGAAGCTATTTTGGTGAAATTGGAGGCAGT
GACTTATGGCCATCTTATGGAAATTTTGGAGGCACAATTGATGCCTAGGA
GAAAGAAAGCGGCACAAAATCTGATTGAGGATTTTGTGACAAGAAAAACT
TGCTACAACAAAAGAAGGGCAAGTTTGTTGAAGAAGATGGAGGACCTTAC
CACTCTTTGTGCTGTAGATTCATGCGCAATCATCGATGGTCCTGGTGATG
ATGTCCCTACTGTGTGGCCATCTCATGACAAGGCTAGAGAGCTTCTCGAC
AAGTTTGAGAATGCTCCATTGACGGATCGGTGGAGAAAAAACGTTACACC
ACAGATTTATGTTGAGCAGAAGAATAAGAAGATTGAAAATCAACTTGCCA
TGCTCAAGGAGAAGAATGATGGGAAAGACATGTCAATTTTCATGCACAAA
ATCCACCATGATGGCAAGTCCTTGTCTGATTTTGACGCTAGTGATATATC
TCGTTTACTTTGTTATGTGGAGGGGAAACTAAAGGGTGTTAGAGAGAAAA
CTGGCCATACTAAACATCATGAGTTGTCTCCTAATCCTCCAACACCGCCA
GTTTCTTGTCCTCTAAAGAATGACATTGGTTCACAGCCCAACACAGATGA
ACCAGTTTTCGAACAATCAACCTTAGATTTAAAGAAAGAAGATGCTACGA
TGAATAATGGTGTTGATAACAATATAGGGAGCAACAACAACATGGGGCTG
CCACCTCCACCACATACACATCTTGGTGATGTTGATATGGTGCTGCATCA
AGATCAAGTCAATTTTGAAGGCTTCAATCATGGTGATGTTGACATGGTGT
TGCCTCCAGGCAATTTTGGAGGCCTCATTGATGAAAGTGGTTCATCTGGG
GTGTTGCCTCAAGGCAATTTTACAGGTCTCAATGGTAATAGTGATTCAGG
GTTTTTGTATGGAAGCTATTTTGGTGAAATTGGAGGCAGTGACTTATGGC
CATCTTATGGAAATTTTGGAGGCACAATTGGGCAGCATGATGAAAATCAA
GGAGGGTCCATTAACAATATAGGGTTATGGGGTCATCAAAGCAACTTTGG
AGCCAACAATGATGCTGTTGCTGTGGGCAGATCATCCAATTATCCAAACT
TTGTGGAAGGGAGTGATATTGAATGGCCTACATTTGAAGGATTTTTTTCC
TCCAAGTGAGGCAGCATGATGAAAATCAAGGAGGGTCCATTAACAATATA
GGGTTATGGGGTCATCAAAGCAACTTTGGAGCCAACAATGATGCTGTTGC
TGTGGGCAGATCATCCAATTATCCAAACTTTGTGGAAGGGAGTGATATTG
AATGGCCTACATTTGAAGGATTTTTTTCCTCCAAGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
IPR036879TF_MADSbox_sf
IPR033897MADS_SRF-like
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0003677DNA binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0000987cis-regulatory region sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0045944positive regulation of transcription by RNA polymerase II