rna-KK1_008713
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_008713 vs. DB:Swiss
Match: SP13B_ARATH (Squamosa promoter-binding-like protein 13B OS=Arabidopsis thaliana OX=3702 GN=SPL13B PE=3 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 8.975e-67 Identity = 156/388 (40.21%), Postives = 216/388 (55.67%), Query Frame = 1
Query: 1 MDWNLKAPSWDLVDVDNKATLANMEKMEDQQNRFGVYRMKGEFSVDLKLGQ-VGNSGTDSVLGKSKDVVVATXXXXXXXXXXXXXXXXXXXXAINN---TSLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLTRPGSFLSNYQGTQLLPFS-SPHVYPSTAMVSPSWSGGIVT--SSAEARFYNQHHQVHHLVEKQDLFLGSSHKEGKQVAFLHSNHQTPPPFXXXXXXXXXXXXXXXXXXXXXXXXSVHDSPCAXXXXXXXQTHTHGNALNQMVQPPSMSLMQPLGLSLQDNNSLESVNHCSSMY---SLGSDGS--QCNEA---PQLSPFQWE 1119
MDWN K S L D + L+ M+ + G + K +FS DLKLG+ +GNS SV G ++ V+ + S +A S SS R N T+ CLVDGC+SD SNCR+YH+RHKVC++HSKTP VTI G KQRFCQQCSRFH+LE+FDE KRSCRKRLDGHNRRRRKPQPE + RP +F + +QG++LL FS HV+P+T++++PSW +V+ +A Y Q Q +GSS + + + S+ + ++ T L ++ +HDS CA S + +++ ++QPP +SL Q ++E+V + S ++ S SDGS NEA PQ PF WE
Sbjct: 1 MDWNFKLSSGYLSGFDQEPDLS---PMDGSISFGGSSQSKADFSFDLKLGRNIGNS--SSVFGDTEQVISLSKWKDSALAKPEGSRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPEHIGRPANFFTGFQGSKLLEFSGGSHVFPTTSVLNPSWGNSLVSVAVAANGSSYGQ---------SQSYVVGSSPAKTGIMFPISSSPNSTRSIAKQFPFLQEEESSRTASLCERMTSCIHDSDCA-----LSLLSSSSSSVPHLLQPP-LSLSQ---------EAVETVFYGSGLFENASAVSDGSVISGNEAVRLPQTFPFHWE 359
BLAST of rna-KK1_008713 vs. DB:Swiss
Match: SP13A_ARATH (Squamosa promoter-binding-like protein 13A OS=Arabidopsis thaliana OX=3702 GN=SPL13A PE=2 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 8.975e-67 Identity = 156/388 (40.21%), Postives = 216/388 (55.67%), Query Frame = 1
Query: 1 MDWNLKAPSWDLVDVDNKATLANMEKMEDQQNRFGVYRMKGEFSVDLKLGQ-VGNSGTDSVLGKSKDVVVATXXXXXXXXXXXXXXXXXXXXAINN---TSLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLTRPGSFLSNYQGTQLLPFS-SPHVYPSTAMVSPSWSGGIVT--SSAEARFYNQHHQVHHLVEKQDLFLGSSHKEGKQVAFLHSNHQTPPPFXXXXXXXXXXXXXXXXXXXXXXXXSVHDSPCAXXXXXXXQTHTHGNALNQMVQPPSMSLMQPLGLSLQDNNSLESVNHCSSMY---SLGSDGS--QCNEA---PQLSPFQWE 1119
MDWN K S L D + L+ M+ + G + K +FS DLKLG+ +GNS SV G ++ V+ + S +A S SS R N T+ CLVDGC+SD SNCR+YH+RHKVC++HSKTP VTI G KQRFCQQCSRFH+LE+FDE KRSCRKRLDGHNRRRRKPQPE + RP +F + +QG++LL FS HV+P+T++++PSW +V+ +A Y Q Q +GSS + + + S+ + ++ T L ++ +HDS CA S + +++ ++QPP +SL Q ++E+V + S ++ S SDGS NEA PQ PF WE
Sbjct: 1 MDWNFKLSSGYLSGFDQEPDLS---PMDGSISFGGSSQSKADFSFDLKLGRNIGNS--SSVFGDTEQVISLSKWKDSALAKPEGSRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPEHIGRPANFFTGFQGSKLLEFSGGSHVFPTTSVLNPSWGNSLVSVAVAANGSSYGQ---------SQSYVVGSSPAKTGIMFPISSSPNSTRSIAKQFPFLQEEESSRTASLCERMTSCIHDSDCA-----LSLLSSSSSSVPHLLQPP-LSLSQ---------EAVETVFYGSGLFENASAVSDGSVISGNEAVRLPQTFPFHWE 359
BLAST of rna-KK1_008713 vs. DB:Swiss
Match: SPL18_ORYSJ (Squamosa promoter-binding-like protein 18 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL18 PE=2 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 3.474e-49 Identity = 122/288 (42.36%), Postives = 154/288 (53.47%), Query Frame = 1
Query: 1 MDWNLKAP-SWDLVDVDNKATLANMEKMED--QQNRFGVYRMKG-----EFSVDLKLGQVGNSGTDSVLGKSKDVVVATXXXXXXXXX------XXXXXXXXXXXAINNTSLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLTRPGSFLSNYQGTQLLPFSSPHVYPSTAMVSPSWSGGIVTSSAEARFYNQHHQVHH-LVEKQDLFLGS---------SHKEGKQVAFLHSNHQ 792
MDW+LK P SWDL ++++ A + NM + V +G E SVDLKLG +G G L + A + AS S S+ R SC VDGC +DLS RDYHRRHKVCE HSKTP V + G + RFCQQCSRFH L +FDE KRSCRKRLDGHNRRRRKPQ + ++ GSF+++ QGT+ F+ P PSW G + S E +Y+ HH H + +Q F+GS S KEG++ FLH Q
Sbjct: 1 MDWDLKMPVSWDLAELEHNA-VPNMAAAASAAEPGIAAVAASRGAPGRPECSVDLKLGGLGEFGAADALKEPAAAAKAPVSSAAAAASVAKVPPSTSTLKRPRGGGGGGGGQCPSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRSCRKRLDGHNRRRRKPQADSMSS-GSFMTSQQGTRFASFTPPR-------PEPSWPG--IIKSEETPYYSHHHHPHPVMTSRQPHFVGSPSSATTAAFSPKEGRRFPFLHEGDQ 277
BLAST of rna-KK1_008713 vs. DB:Swiss
Match: SPL16_ORYSJ (Squamosa promoter-binding-like protein 16 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL16 PE=2 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 5.146e-49 Identity = 85/163 (52.15%), Postives = 106/163 (65.03%), Query Frame = 1
Query: 301 SCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLTRPGSFLSNYQGTQLLPFSSPHVYPSTAMVSPSWSGGIVTSSAEARFYNQHHQVHHLVEKQDLFLGSSHKEGKQVAFLHSNH 789
SC VDGC DLS CRDYHRRHKVCE HSKTP V + G + RFCQQCSRFH L++FDE KRSCRKRLDGHNRRRRKPQP+P+ S+L++ QG + PF++P SW+G I T E+ +Y H + +Q F+GS+ G++ FL
Sbjct: 117 SCAVDGCKEDLSKCRDYHRRHKVCEAHSKTPLVVVSGREMRFCQQCSRFHLLQEFDEAKRSCRKRLDGHNRRRRKPQPDPMNS-ASYLASQQGARFSPFATPR-------PEASWTGMIKTE--ESPYYTHHQIPLGISSRQQHFVGSTSDGGRRFPFLQEGE 269
BLAST of rna-KK1_008713 vs. DB:Swiss
Match: SPL2_ORYSJ (Squamosa promoter-binding-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL2 PE=2 SV=2) HSP 1 Score: 160.614 bits (405), Expect = 4.586e-44 Identity = 101/245 (41.22%), Postives = 131/245 (53.47%), Query Frame = 1
Query: 1 MDWNLKAPSWDLVDVDNKATLANMEKMEDQQNRFGVYRMKGEFSVDLKLGQVGNSGTDSVLGKSKDVVVATXXXXXXXXXXXXXXXXXXXXAI---NNTSLTVSCLVDGCNSDLSNC-RDYHRRHKVCELHSKTPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLTRPGSFLSNYQGTQLLPFSSPHVYPSTAMVSP---SWSGGIVTSSAEARFYNQHHQVHHL 714
MDW+ K PSWDL V + ++DLKLG + T + + + A ASS SS ++ RA + +C V+GC +DLS C RDYHRRHKVCE HSKT VT+ G +QRFCQQCSRFH L +FDE KRSCRKRLDGHN+RRRKPQP+PL PG+ +N+ G S P ++ + A +SP W +V + A F ++ HL
Sbjct: 1 MDWDAKMPSWDLGTVVGPSGGGGGGGGGGG-------------ALDLKLGAPTSWKTTTTVSAASAAPAAVAPPPPPPASSSSSAAAAGKRARAGQGQQAAVPACSVEGCAADLSKCVRDYHRRHKVCEAHSKTAVVTVAGQQQRFCQQCSRFHLLGEFDEEKRSCRKRLDGHNKRRRKPQPDPLN-PGNLFANHHGAARFT-SYPQIFSTAASMSPQETKWPANVVKTEAADVFQEPYYHALHL 230
BLAST of rna-KK1_008713 vs. DB:Swiss
Match: TGA1B_MAIZE (Teosinte glume architecture 1 OS=Zea mays OX=4577 GN=TGA1 PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 2.528e-43 Identity = 105/286 (36.71%), Postives = 137/286 (47.90%), Query Frame = 1
Query: 1 MDWNLKAP-SWDLVDVDNKATLA-------------NMEKMEDQQNRFGVYRMKGEFSVDLKLGQVGNSGTDSVLGKSKDVVVATXXXXXXXXXXXXXXXXXXXXAINNTSLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLTRPGSFLSNYQGTQLLPFSSPHVYPSTAMVSPSWSGGIVTSSAEARFYNQHHQV---HHLVEKQDLF--LGSS----HKEGKQVAFLHSNH 789
MDW+L A +WDL +++ A E + G E SVDLKLG +G + + + A SC VDGC +DL CRDYHRRHKVCE HSKTP V + G + RFCQQCSRFH L +FD KRSCRKRLDGHNRRRRKPQP+ + SF+++ QGT+ PF+ P + SW G++ + E Y+ HQ+ +Q F LG++ KEG++ FL
Sbjct: 1 MDWDLNAAGAWDLAELERDHAAAAPSSGGHAANAAAAGTGTESRPPAPGAAGAPAECSVDLKLGGMGECEPGAARREREAAAGAAKRPRPAGPG-----------GQQQQQQCPSCAVDGCRADLGKCRDYHRRHKVCEAHSKTPVVVVAGREMRFCQQCSRFHLLAEFDADKRSCRKRLDGHNRRRRKPQPDTMAS-ASFIASQQGTRFSPFAHPR-------LEASWPPGVMKT--EESPYHITHQIPLGSSSSSRQQHFVALGAATPAYAKEGRRFPFLQEGE 265
BLAST of rna-KK1_008713 vs. DB:Swiss
Match: TGA1W_MAIZE (Teosinte glume architecture 1 OS=Zea mays OX=4577 GN=TGA1 PE=1 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 3.083e-43 Identity = 105/286 (36.71%), Postives = 137/286 (47.90%), Query Frame = 1
Query: 1 MDWNLKAP-SWDLVDVDNKATLA-------------NMEKMEDQQNRFGVYRMKGEFSVDLKLGQVGNSGTDSVLGKSKDVVVATXXXXXXXXXXXXXXXXXXXXAINNTSLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLTRPGSFLSNYQGTQLLPFSSPHVYPSTAMVSPSWSGGIVTSSAEARFYNQHHQV---HHLVEKQDLF--LGSS----HKEGKQVAFLHSNH 789
MDW+L A +WDL +++ A E + G E SVDLKLG +G + + + A SC VDGC +DL CRDYHRRHKVCE HSKTP V + G + RFCQQCSRFH L +FD KRSCRKRLDGHNRRRRKPQP+ + SF+++ QGT+ PF+ P + SW G++ + E Y+ HQ+ +Q F LG++ KEG++ FL
Sbjct: 1 MDWDLNAAGAWDLAELEQDHAAAAPSSGGHAANAAAAGTGTESRPPAPGAAGAPAECSVDLKLGGMGECEPGAARREREAAAGAAKRPRPAGP------------GGQQQQQCPSCAVDGCRADLGKCRDYHRRHKVCEAHSKTPVVVVAGREMRFCQQCSRFHLLAEFDADKRSCRKRLDGHNRRRRKPQPDTMAS-ASFIASQQGTRFSPFAHPR-------LEASWPPGVMKT--EESPYHITHQIPLGSSSSSRQQHFVALGAATPAYAKEGRRFPFLQEGE 264
BLAST of rna-KK1_008713 vs. DB:Swiss
Match: SPL19_ORYSJ (Putative squamosa promoter-binding-like protein 19 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL19 PE=3 SV=2) HSP 1 Score: 146.747 bits (369), Expect = 2.209e-39 Identity = 70/112 (62.50%), Postives = 82/112 (73.21%), Query Frame = 1
Query: 301 SCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLTRPGSFLSNYQGTQLLPFSSPHVYPSTAMVS 636
+C VDGC SDLS CRDYHRRHKVCE H+KTP V + G +QRFCQQCSRFH+L +FD+ K+SCRKRLDGHNRRRRKPQ + L P SFL +Q Q VYP T ++
Sbjct: 92 ACSVDGCRSDLSRCRDYHRRHKVCEAHAKTPVVVVAGQEQRFCQQCSRFHNLAEFDDGKKSCRKRLDGHNRRRRKPQHDALN-PRSFLPYHQANQF------SVYPQTFPIA 196
BLAST of rna-KK1_008713 vs. DB:Swiss
Match: SPL12_ARATH (Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=SPL12 PE=1 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.462e-31 Identity = 61/109 (55.96%), Postives = 72/109 (66.06%), Query Frame = 1
Query: 289 SLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLTRPGSF----LSNYQGTQLLPFSS 603
S + C VD C +DLS +DYHRRHKVCE+HSK +GG+ QRFCQQCSRFH LE+FDE KRSCR+RL GHN+RRRK P+ + S SNY LL S
Sbjct: 122 SRAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKANPDTIGNGTSMSDDQTSNYMLITLLKILS 230
BLAST of rna-KK1_008713 vs. DB:Swiss
Match: SPL1_ARATH (Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=SPL1 PE=1 SV=2) HSP 1 Score: 129.798 bits (325), Expect = 1.596e-31 Identity = 54/79 (68.35%), Postives = 64/79 (81.01%), Query Frame = 1
Query: 304 CLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEP 540
C V+ C +DLS +DYHRRHKVCE+HSK T+GG+ QRFCQQCSRFH L++FDE KRSCR+RL GHN+RRRK PEP
Sbjct: 106 CQVENCEADLSKVKDYHRRHKVCEMHSKATSATVGGILQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNPEP 184 The following BLAST results are available for this feature:
BLAST of rna-KK1_008713 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_008713_Cc_Asha_v1.0 ID=rna-KK1_008713_Cc_Asha_v1.0; Name=rna-KK1_008713; organism=Cajanus cajan; type=mRNA; length=1122bpback to top protein sequence of rna-KK1_008713_Cc_Asha_v1.0 >rna-KK1_008713_Cc_Asha_v1.0 ID=rna-KK1_008713_Cc_Asha_v1.0; Name=rna-KK1_008713_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=373bpback to top mRNA from alignment at Chr_3-CM003605.1:4334692..4338432+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_008713_Cc_Asha_v1.0 ID=rna-KK1_008713_Cc_Asha_v1.0; Name=rna-KK1_008713; organism=Cajanus cajan; type=mRNA; length=3741bp; location=Sequence derived from: Chr_3-CM003605.1:4334692..4338432+ (Cajanus cajanback to top Coding sequence (CDS) from alignment at Chr_3-CM003605.1:4334692..4338432+ >rna-KK1_008713_Cc_Asha_v1.0 ID=rna-KK1_008713_Cc_Asha_v1.0; Name=rna-KK1_008713; organism=Cajanus cajan; type=CDS; length=2244bp; location=Sequence derived from: Chr_3-CM003605.1:4334692..4338432+ (Cajanus cajanback to top |