rna-KK1_009344

Transcript Overview
Namerna-KK1_009344
Unique Namerna-KK1_009344_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length390
ProductErgosterol biosynthetic protein 28
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_3-CM003605.1supercontigChr_3-CM003605.1:10971808..10974457 +Cajanus cajan Asha genome v1.0n/a
Chr_3-CM003605.1supercontigChr_3-CM003605.1:10971808..10974457 +Cajanus cajan Asha genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ccpsR640Pisum sativum Cameor genome v1aPisum sativum
ccpsR643Pisum sativum Cameor genome v1aPisum sativum
ccpvR0956Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuR0930Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anccL0408Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0477Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0974Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asccL0865Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cctifR0721Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR0737Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0773Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvssR0837Vicia sativa cv. Studenica genome v1.0Vicia sativa
canccL0661Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjccL0942Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carccL0719Cicer arietinum
ccccaR0971Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR0938Vigna umbellata FF25 genome v1.0Vigna umbellata

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_014644776.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vfaba.Hedin2.R1.2g198760.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigun09g188800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
jg55709.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Phvul.009G113300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Va04G060140.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
LR48_mrnaVigan04g205000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-TanjilR_12577Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Tiffany.R1.2g161560.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-XM_004501027.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vum_02G00865.1Vigna umbellata FF25 genome v1.0Vigna umbellata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Cc_v2.0_06760.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_009344gene-KK1_009344_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_009344rna-KK1_009344_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_009344_Cc_Asha_v1.0rna-KK1_009344_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_009344_Cc_Asha_v1.0-exon-Chr_3-CM003605.1_Cc_Asha_v1.0-1571082112:10971808..10971922rna-KK1_009344_Cc_Asha_v1.0-exon-Chr_3-CM003605.1_Cc_Asha_v1.0-1571082112:10971808..10971922Cajanus cajanexon
rna-KK1_009344_Cc_Asha_v1.0-exon-Chr_3-CM003605.1_Cc_Asha_v1.0-1571847872:10971808..10971922rna-KK1_009344_Cc_Asha_v1.0-exon-Chr_3-CM003605.1_Cc_Asha_v1.0-1571847872:10971808..10971922Cajanus cajanexon
rna-KK1_009344_Cc_Asha_v1.0-exon-Chr_3-CM003605.1_Cc_Asha_v1.0-1571082112:10973743..10973949rna-KK1_009344_Cc_Asha_v1.0-exon-Chr_3-CM003605.1_Cc_Asha_v1.0-1571082112:10973743..10973949Cajanus cajanexon
rna-KK1_009344_Cc_Asha_v1.0-exon-Chr_3-CM003605.1_Cc_Asha_v1.0-1571847872:10973743..10973949rna-KK1_009344_Cc_Asha_v1.0-exon-Chr_3-CM003605.1_Cc_Asha_v1.0-1571847872:10973743..10973949Cajanus cajanexon
rna-KK1_009344_Cc_Asha_v1.0-exon-Chr_3-CM003605.1_Cc_Asha_v1.0-1571082112:10974390..10974457rna-KK1_009344_Cc_Asha_v1.0-exon-Chr_3-CM003605.1_Cc_Asha_v1.0-1571082112:10974390..10974457Cajanus cajanexon
rna-KK1_009344_Cc_Asha_v1.0-exon-Chr_3-CM003605.1_Cc_Asha_v1.0-1571847872:10974390..10974457rna-KK1_009344_Cc_Asha_v1.0-exon-Chr_3-CM003605.1_Cc_Asha_v1.0-1571847872:10974390..10974457Cajanus cajanexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_009344_Cc_Asha_v1.0-CDS-Chr_3-CM003605.1_Cc_Asha_v1.0-1571082112:10971808..10971922rna-KK1_009344_Cc_Asha_v1.0-CDS-Chr_3-CM003605.1_Cc_Asha_v1.0-1571082112:10971808..10971922Cajanus cajanCDS
rna-KK1_009344_Cc_Asha_v1.0-CDS-Chr_3-CM003605.1_Cc_Asha_v1.0-1571847872:10971808..10971922rna-KK1_009344_Cc_Asha_v1.0-CDS-Chr_3-CM003605.1_Cc_Asha_v1.0-1571847872:10971808..10971922Cajanus cajanCDS
rna-KK1_009344_Cc_Asha_v1.0-CDS-Chr_3-CM003605.1_Cc_Asha_v1.0-1571082112:10973743..10973949rna-KK1_009344_Cc_Asha_v1.0-CDS-Chr_3-CM003605.1_Cc_Asha_v1.0-1571082112:10973743..10973949Cajanus cajanCDS
rna-KK1_009344_Cc_Asha_v1.0-CDS-Chr_3-CM003605.1_Cc_Asha_v1.0-1571847872:10973743..10973949rna-KK1_009344_Cc_Asha_v1.0-CDS-Chr_3-CM003605.1_Cc_Asha_v1.0-1571847872:10973743..10973949Cajanus cajanCDS
rna-KK1_009344_Cc_Asha_v1.0-CDS-Chr_3-CM003605.1_Cc_Asha_v1.0-1571082112:10974390..10974457rna-KK1_009344_Cc_Asha_v1.0-CDS-Chr_3-CM003605.1_Cc_Asha_v1.0-1571082112:10974390..10974457Cajanus cajanCDS
rna-KK1_009344_Cc_Asha_v1.0-CDS-Chr_3-CM003605.1_Cc_Asha_v1.0-1571847872:10974390..10974457rna-KK1_009344_Cc_Asha_v1.0-CDS-Chr_3-CM003605.1_Cc_Asha_v1.0-1571847872:10974390..10974457Cajanus cajanCDS


Homology
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BLAST of rna-KK1_009344 vs. DB:Swiss
Match: ERG28_ARATH (Ergosterol biosynthetic protein 28 OS=Arabidopsis thaliana OX=3702 GN=At1g10030 PE=2 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 1.321e-73
Identity = 105/129 (81.40%), Postives = 117/129 (90.70%), Query Frame = 1 
Query:    1 MKALGWWLIAVGTLRLASVWFGFFDIWALRLAVFSKTTMTEVHGRTFGTWTLLTCTLCYICAFNLENKPLYLATFLSFIYAFGHFLTEYLIYHTMEISNLTTVGIFAGTSIVWMLLQWNSHSKVHLKHS 387
            MKALG+WL+ VG+LRLASVWFGFF+IWALRLAVFS+TTM+EVHGRTFG WTLLTCTLC++CAFNLENKPLYLATFLSFIYA GHFLTEYL Y TM I+NL+TVG FAGTSIVWMLL+WNS  + H K S
Sbjct:    1 MKALGYWLMVVGSLRLASVWFGFFNIWALRLAVFSQTTMSEVHGRTFGVWTLLTCTLCFLCAFNLENKPLYLATFLSFIYALGHFLTEYLFYQTMTIANLSTVGFFAGTSIVWMLLEWNSLEQPHSKLS 129
[Close]
BLAST of rna-KK1_009344 vs. DB:Swiss
Match: ERG28_PONAB (Probable ergosterol biosynthetic protein 28 OS=Pongo abelii OX=9601 GN=ERG28 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 9.151e-10
Identity = 35/109 (32.11%), Postives = 54/109 (49.54%), Query Frame = 1 
Query:    1 MKALGWWLIAVGTLRLASVWFGFFDIWAL--RLAVFSKTTMTEVHGRTFGTWTLLTCTLCYICAFNLENKPLYLATFLSFIYAFGHFLTEYLIYHTMEISNLTTVGIFA 321
            +  L  WL+ V  + + +    F D   L  +L       +  +  RTFG WTLL+  +  +CA ++ NK LY  T  +F+ A GHFL+E  +Y T       T+G+ A
Sbjct:    5 LNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPNLVNGLQARTFGIWTLLSSVIRCLCAIDIHNKTLYHITLWTFLLALGHFLSELFVYGTAA----PTIGVLA 109
[Close]
BLAST of rna-KK1_009344 vs. DB:Swiss
Match: ERG28_HUMAN (Probable ergosterol biosynthetic protein 28 OS=Homo sapiens OX=9606 GN=ERG28 PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 9.151e-10
Identity = 35/109 (32.11%), Postives = 54/109 (49.54%), Query Frame = 1 
Query:    1 MKALGWWLIAVGTLRLASVWFGFFDIWAL--RLAVFSKTTMTEVHGRTFGTWTLLTCTLCYICAFNLENKPLYLATFLSFIYAFGHFLTEYLIYHTMEISNLTTVGIFA 321
            +  L  WL+ V  + + +    F D   L  +L       +  +  RTFG WTLL+  +  +CA ++ NK LY  T  +F+ A GHFL+E  +Y T       T+G+ A
Sbjct:    5 LNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPNLVNGLQARTFGIWTLLSSVIRCLCAIDIHNKTLYHITLWTFLLALGHFLSELFVYGTAA----PTIGVLA 109
[Close]
BLAST of rna-KK1_009344 vs. DB:Swiss
Match: ERG28_MOUSE (Probable ergosterol biosynthetic protein 28 OS=Mus musculus OX=10090 GN=Erg28 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 2.418e-9
Identity = 35/109 (32.11%), Postives = 54/109 (49.54%), Query Frame = 1 
Query:    1 MKALGWWLIAVGTLRLASVWFGFFDIWAL--RLAVFSKTTMTEVHGRTFGTWTLLTCTLCYICAFNLENKPLYLATFLSFIYAFGHFLTEYLIYHTMEISNLTTVGIFA 321
            +  L  WL+ V  + + +    F D   L  +L       +  +  RTFG WTLL+  +  +CA ++ NK LY  T  +F+ A GHFL+E  ++ T       TVG+ A
Sbjct:    5 LNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPNLVNGLQARTFGIWTLLSSVIRCLCAIDIHNKTLYHITLWTFLLALGHFLSELFVFGTAA----PTVGVLA 109
The following BLAST results are available for this feature:
BLAST of rna-KK1_009344 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 4
Match NameE-valueIdentityDescription
ERG28_ARATH1.321e-7381.40Ergosterol biosynthetic protein 28 OS=Arabidopsis ... [more]
ERG28_PONAB9.151e-1032.11Probable ergosterol biosynthetic protein 28 OS=Pon... [more]
ERG28_HUMAN9.151e-1032.11Probable ergosterol biosynthetic protein 28 OS=Hom... [more]
ERG28_MOUSE2.418e-932.11Probable ergosterol biosynthetic protein 28 OS=Mus... [more]
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InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005352Erg28PFAMPF03694Erg28coord: 3..100
e-value: 4.7E-25
score: 88.1

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_009344_Cc_Asha_v1.0 ID=rna-KK1_009344_Cc_Asha_v1.0; Name=rna-KK1_009344; organism=Cajanus cajan; type=mRNA; length=390bp
ATGAAGGCGTTGGGATGGTGGCTGATAGCGGTAGGCACGCTTCGATTGGC
TTCCGTATGGTTCGGTTTCTTCGACATTTGGGCTCTTCGCCTCGCCGTCT
TCTCCAAAACCACAATGACTGAAGTTCATGGGCGCACATTTGGAACTTGG
ACATTGTTGACCTGCACCCTTTGCTATATCTGTGCATTCAACCTTGAAAA
CAAACCTCTCTACCTGGCTACTTTCCTGTCATTCATCTATGCATTTGGTC
ATTTCCTGACCGAATACCTAATTTATCATACAATGGAGATTTCTAATCTC
ACTACTGTTGGCATATTTGCAGGAACATCGATAGTATGGATGCTATTGCA
ATGGAATTCGCATTCGAAAGTCCACTTGAAGCACTCTTAG
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protein sequence of rna-KK1_009344_Cc_Asha_v1.0

>rna-KK1_009344_Cc_Asha_v1.0 ID=rna-KK1_009344_Cc_Asha_v1.0; Name=rna-KK1_009344_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=129bp
MKALGWWLIAVGTLRLASVWFGFFDIWALRLAVFSKTTMTEVHGRTFGTW
TLLTCTLCYICAFNLENKPLYLATFLSFIYAFGHFLTEYLIYHTMEISNL
TTVGIFAGTSIVWMLLQWNSHSKVHLKHS
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mRNA from alignment at Chr_3-CM003605.1:10971808..10974457+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_009344_Cc_Asha_v1.0 ID=rna-KK1_009344_Cc_Asha_v1.0; Name=rna-KK1_009344; organism=Cajanus cajan; type=mRNA; length=2650bp; location=Sequence derived from: Chr_3-CM003605.1:10971808..10974457+ (Cajanus cajan
ATGAAGGCGTTGGGATGGTGGCTGATAGCGGTAGGCACGCTTCGATTGGC
TTCCGTATGGTTCGGTTTCTTCGACATTTGGGCTCTTCGCCTCGCCGTCT
TCTCCAAAACCACAAGTAACTCTCTTTCCTCTTTTTACTCCAACCTCCTT
GCATCAATCTAGATAGATCCTCGCTCCTTTCAATGCAAGATATTGTCGGT
TAGGTTAGGTTAGGTTACGGTACTCCACTTGCTTCTTGCTTCCTCTCTGT
TGGGGCTTCTGTCATTCACAATTCATCAGTTTTCTCCCATCTGTCACTAT
CAGATCTTCTAGATCCCAATGCACTCGATACTGTTAGCTTTCACAACGAT
ACGTCCTTGTTCCCCCTTCGCTTTTCACAAGCTATCAGAATGTTTCCACA
ATACTTTCTACATCGATTGCATTCTCAATTCCCAAATTCCCCTTTCTCGT
GTTAACTTAACTACTACCAGTATGTAATGTATGCATCACGCAACCGCttc
tggatttttttttttttaatgttcaaaAATAAATGTAGGAGACGGTATtc
atttgtatattatatattgctTCAACTAAATGGAGGCAGCCATTCaactt
tttagtttaatttctgttttagtcacctttttttttttttttttttttaa
ttatggtaTCGACAGAAGTATTTAATGATTAAAGAAAGACCTTGACTTCA
ACACTGAGACTATGGCTTGTGTTACatcttatactttttatttttgaaaa
tattttatattttttttcccctttttttttttttttttttttaattatgg
taTCGACAGAAGTATTTAATGATTAAAGAAAGACCTTGACTTCAACACTG
AGACTATGGCTTGTGTTACatcttatactttttatttttgaaaatatttt
atacattgttcTTTTGCCAATTTAATCAAATGAATGATATGTTACCCCTC
TGTTAACTATTGGATGAAATCTTGGGACGACAGACTTGATTTGATTAATT
GAAAAACTATGGAAATTATGtgtgaataatttaaattagtaggACTAAAT
TGCGCACAAAATATGGAGAGAAGAAATGTAATTAAGCCTACGTATTGTTT
CTAGATGCCAACATGTATTATATCGATAGAAATCTGGTTTGGCTAAGTGG
TTAATCCAATGACAACTAAATCTCTTTGAGGGAGTGTGAATGAGAAAGTA
TAGAGTGAGTTGTCTCATCACAACAAGTATGCAAGTTCGGTTTTGATTGC
ACAGATAGGGAAATTTAGCCTGTCAGGAAAAAAACTGAAAATCTGTTTTG
AGTCTTCTGAGTAATTTATTGCTGATTGTCTTTTAGGGTAAAGGATGGTT
TTAGAACTTGGAAAGAGTTGAAGGATGCAAGTTAACAAgtattttgattg
ttttttaaATTCTGAAGTATTTCATGTGTAGAGGTTTAATATTCTTTGAC
AAATTAAATACTGTTATTACCCTTGTCAACTGTATCTTTTTTGCTTGCCT
AGCCTTTTTGAGGCTGGGTTTAACCTTAAGTCAGCTTTGAACATCACGGA
TATTGACGATGTAATGTTGCAAATTGTTCACAATTTCGCATAATATCCTT
TCGTAAATCATCTCGAAAGTTGTTCCCAGTGTATGCAGTCAAAGTAATTG
GATATTTTGAATCCGAATCCTTTTATCTATCGTAAAACTCTTGCTAGGAG
CGGCACATGCTTAATGAAGCGAGGATCCAATTAATCAAAACAAAGCAAAC
ACTCTTCTTTTGAGTCTTTACTATTAGTAATGGCTACGACTGGCAGAGCA
GGCTTTATTTTCACAATGAATTAGAAATGTTGTTCTGCTAAGCTTGTTTA
agctttatattaattatagtttcAAAAAATATCCTAATGTGGATTTCAGA
ATTATCAGAATTGATGAGTTTATTATTTGTTGCAGTGACTGAAGTTCATG
GGCGCACATTTGGAACTTGGACATTGTTGACCTGCACCCTTTGCTATATC
TGTGCATTCAACCTTGAAAACAAACCTCTCTACCTGGCTACTTTCCTGTC
ATTCATCTATGCATTTGGTCATTTCCTGACCGAATACCTAATTTATCATA
CAATGGAGATTTCTAATCTCACTACTGTTGGCATATTTGCAGGTATGAAA
TTTTATTCTCGTGTCCCATCAAATTGGCATGCACTACATTGTTTCCTact
ttcctttaattttaaacCTAAACTTAgtggtttttcttctttttctatat
ctcgccaattatttttctatcaacTGTGGGTTATGTGTTTATTCTTGCGT
GCGAAATTTAATTGTTGGAGACGGTAATTTGTAGGCATGCTCAACCCTTT
CAGTTGTCTTCTTGTTGTATATGAATTatttgctactttctttttGCACT
GCCCTAgtcaaaaaactaaaaagaaagaaaaagaatcttgTACTCCAATA
CATGTCCTCTACTGCATACTTTAGTCACATTATTATTCTGGCATGACCTC
GGTTTGGCTTATTATTGTCCTATTATGTTAGCATTATTAATGGATGAAAC
ACATTTTAACGTCTAAGTTTACTGATATATAGGAACATCGATAGTATGGA
TGCTATTGCAATGGAATTCGCATTCGAAAGTCCACTTGAAGCACTCTTAG
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Coding sequence (CDS) from alignment at Chr_3-CM003605.1:10971808..10974457+

>rna-KK1_009344_Cc_Asha_v1.0 ID=rna-KK1_009344_Cc_Asha_v1.0; Name=rna-KK1_009344; organism=Cajanus cajan; type=CDS; length=780bp; location=Sequence derived from: Chr_3-CM003605.1:10971808..10974457+ (Cajanus cajan
ATGAAGGCGTTGGGATGGTGGCTGATAGCGGTAGGCACGCTTCGATTGGC
TTCCGTATGGTTCGGTTTCTTCGACATTTGGGCTCTTCGCCTCGCCGTCT
TCTCCAAAACCACAAATGAAGGCGTTGGGATGGTGGCTGATAGCGGTAGG
CACGCTTCGATTGGCTTCCGTATGGTTCGGTTTCTTCGACATTTGGGCTC
TTCGCCTCGCCGTCTTCTCCAAAACCACAATGACTGAAGTTCATGGGCGC
ACATTTGGAACTTGGACATTGTTGACCTGCACCCTTTGCTATATCTGTGC
ATTCAACCTTGAAAACAAACCTCTCTACCTGGCTACTTTCCTGTCATTCA
TCTATGCATTTGGTCATTTCCTGACCGAATACCTAATTTATCATACAATG
GAGATTTCTAATCTCACTACTGTTGGCATATTTGCAGTGACTGAAGTTCA
TGGGCGCACATTTGGAACTTGGACATTGTTGACCTGCACCCTTTGCTATA
TCTGTGCATTCAACCTTGAAAACAAACCTCTCTACCTGGCTACTTTCCTG
TCATTCATCTATGCATTTGGTCATTTCCTGACCGAATACCTAATTTATCA
TACAATGGAGATTTCTAATCTCACTACTGTTGGCATATTTGCAGGAACAT
CGATAGTATGGATGCTATTGCAATGGAATTCGCATTCGAAAGTCCACTTG
AAGCACTCTTAGGAACATCGATAGTATGGATGCTATTGCAATGGAATTCG
CATTCGAAAGTCCACTTGAAGCACTCTTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR005352Erg28
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane