rna-KK1_010194
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_010194 vs. DB:Swiss
Match: P2A15_ARATH (F-box protein PP2-A15 OS=Arabidopsis thaliana OX=3702 GN=PP2A15 PE=2 SV=1) HSP 1 Score: 429.483 bits (1103), Expect = 1.397e-151 Identity = 199/268 (74.25%), Postives = 236/268 (88.06%), Query Frame = 1 Query: 43 VAPGLGDIPEGCVARVFLHLTPPEICNLARLNRSFRGAASADSVWEAKLPPNYHDLLLLMPPERHQHLSKKNIFALLSRPVPFDHGYKEVWLDRVTGRVCISISAKAMSITGIDDRRYWTWLPTEESRFNTVAYLQQIWWFEVDGEVNFPLPADIYTLSFRLHLGRFSKRLGRRVCNYEHTHGWDIKPVRFQLSTMDGQQASFECCLDENEPDDAHGNHKRGHWVDYKVGEFIVSGSEPTTKVRFSMKQIDCTHSKGGLCVDSVFIIP 846 + PGLGDIPE CVA VF++LTPPEICNLA LNRSFRGAAS+DSVWE KLP NY DLL L+PPER+ LSKK+IFA+LSRP+PFD KEVW+DRVTGRVC++ISA+ MSITGI+DRRYW W+PTEESRF+ VAYLQQIWWFEVDG V F LP +Y+LSFR+HLGRF+KRLGRRVC++E THGWD+KPVRF LST DGQ+AS E LD+ E ++A G HKRG+W++Y+VGEFIV+GSEP+T++++SMKQIDCTHSKGGLCVDSVFI P Sbjct: 17 MGPGLGDIPESCVACVFMYLTPPEICNLAGLNRSFRGAASSDSVWEKKLPENYQDLLDLLPPERYHSLSKKDIFAVLSRPIPFDDDNKEVWIDRVTGRVCMAISARGMSITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGTVRFHLPPGVYSLSFRIHLGRFTKRLGRRVCHFELTHGWDLKPVRFSLSTSDGQEASCEYYLDDVERNEALGKHKRGYWIEYRVGEFIVNGSEPSTEIQWSMKQIDCTHSKGGLCVDSVFINP 284
BLAST of rna-KK1_010194 vs. DB:Swiss
Match: P2A12_ARATH (F-box protein PP2-A12 OS=Arabidopsis thaliana OX=3702 GN=P2A12 PE=2 SV=1) HSP 1 Score: 315.849 bits (808), Expect = 6.633e-107 Identity = 151/275 (54.91%), Postives = 198/275 (72.00%), Query Frame = 1 Query: 43 VAPGLGDIPEGCVARVFLHLTPPEICNLARLNRSFRGAASADSVWEAKLPPNYHDLLLLMPPERHQHLSKKNIFALLSRPVPFDHGYKEVWLDRVTGRVCISISAKAMSITGIDDRRYWTWLPTEESRFNTVAYLQQIWWFEVDGEVNFPLPADIYTLSFRLHLGRFSKRLGRRVCNYEHTHGWDIKPVRFQLSTMDGQQASFECCLDENEPDDAHGNHKRGHWVDYKVGEFIVSGSE-PTTKVRFSMKQIDCTHSKGGLCVDSVFIIPSNLRER 864 + PGLGD+PE CVA + +L P EIC ++LNR+FRGA+ AD VWE+KLP NY D+L + ++L K++++A LSR FD K+VW+D+ T VC+SISAK +SITGIDDRRYW+ +PT+ESRF++VAYLQQIWWFEVDGE++FP P Y++ FRL LGR K GRRVCN E HGWDIKPVRFQL T DGQ +S +C L E RG+W+ Y G+ +V S +TK++FSM QIDCTH+KGGL +DSV + PS+ +++ Sbjct: 24 LKPGLGDLPEACVAIIVENLDPVEICRFSKLNRAFRGASWADCVWESKLPQNYRDVLEKILGGFPENLQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAKGLSITGIDDRRYWSHIPTDESRFSSVAYLQQIWWFEVDGEIDFPFPVGTYSIFFRLQLGRSGKWFGRRVCNTEQVHGWDIKPVRFQLWTEDGQYSSSQCMLTE-----------RGNWIHYHAGDVVVRESNRSSTKIKFSMTQIDCTHTKGGLSLDSVVVYPSSCKDQ 287
BLAST of rna-KK1_010194 vs. DB:Swiss
Match: P2A13_ARATH (F-box protein PP2-A13 OS=Arabidopsis thaliana OX=3702 GN=PP2A13 PE=1 SV=1) HSP 1 Score: 309.301 bits (791), Expect = 2.430e-104 Identity = 152/275 (55.27%), Postives = 192/275 (69.82%), Query Frame = 1 Query: 55 LGDIPEGCVARVFLHLTPPEICNLARLNRSFRGAASADSVWEAKLPPNYHDLLLLMPPE-RHQHLSKKNIFALLSRPVPFDHGYKEVWLDRVTGRVCISISAKAMSITGIDDRRYWTWLPTEESRFNTVAYLQQIWWFEVDGEVNFPLPADIYTLSFRLHLGRFSKRLGRRVCNYEHTHGWDIKPVRFQLSTMDGQQASFECCLDENEPDDAHGNHKRGHWVDYKVGEFIVSGSEPTTKVRFSMKQIDCTHSKGGLCVDSVFIIPSN-LRERTGS 873 L D+PE CVA + L PPEIC LARLNR FR A+SAD +WE+KLP NY + + E L KK+++A LS+P FD G KE+W+D+ TGR+C+SIS+KA+ ITGIDDRRYW+ +PT+ESRF + AY+QQIWWFEV GE P+ Y+L FR+ LG+ SKRLGRR+CN EH HGWDIKPVRFQL+T D QQA C L+ N G W Y VG+F V+ + +T ++FSM QIDCTH+KGGLC+DSV I+P +E GS Sbjct: 25 LVDLPENCVALIMTRLDPPEICRLARLNRMFRRASSADFIWESKLPANYRVIAHKVFDEITLTKLIKKDLYAKLSQPNLFDDGTKELWIDKNTGRLCLSISSKALRITGIDDRRYWSHIPTDESRFQSAAYVQQIWWFEVGGEFEIQFPSGTYSLFFRIQLGKTSKRLGRRICNSEHIHGWDIKPVRFQLATSDNQQAVSLCYLNNNP----------GSWSHYHVGDFKVTNPDVSTGIKFSMTQIDCTHTKGGLCIDSVLILPKECAKEVIGS 289
BLAST of rna-KK1_010194 vs. DB:Swiss
Match: P2A11_ARATH (F-box protein PP2-A11 OS=Arabidopsis thaliana OX=3702 GN=PP2A11 PE=1 SV=1) HSP 1 Score: 287.73 bits (735), Expect = 7.001e-96 Identity = 142/275 (51.64%), Postives = 192/275 (69.82%), Query Frame = 1 Query: 43 VAPGLGDIPEGCVARVFLHLTPPEICNLARLNRSFRGAASADSVWEAKLPPNYHDLLLLMPPERHQHLSKKNIFALLSRPVPFDHGYKEVWLDRVTGRVCISISAKAMSITGIDDRRYWTWLPTEESRFNTVAYLQQIWWFEVDGEVNFPLPADIYTLSFRLHLGRFSKRLGRRVCNYEHTHGWDIKPVRFQLSTMDGQQASFECCLDENEPDDAHGNHKRGHWVDYKVGEFIVS-GSEPTTKVRFSMKQIDCTHSKGGLCVDSVFIIPSNLRER 864 + PGLGD+PE CVA + +L P EIC ++LN +F GA+ AD VWE+KLPP+Y +L + +L K++IF LSR FD G K+ W+D+ TG +C+ SAK +SITGIDDRRYW+ +P+++SRF +VAY+QQIWWF+VDGE++FP PA Y++ FRL LG+ KR G +V + E HGW+IKPVRFQLST DGQ +S +C L E G+W Y G+F+V +TK++FSM QIDCTH+KGGLCVDSV + PS+ ++R Sbjct: 22 LQPGLGDLPESCVALILQNLDPVEICRFSKLNTAFHGASWADFVWESKLPPDYKLILEKILGSFPDNLRKRDIFTFLSRVNSFDEGNKKAWVDKRTGGLCLCTSAKGLSITGIDDRRYWSHIPSDDSRFASVAYVQQIWWFQVDGEIDFPFPAGTYSVYFRLQLGKPGKRFGWKVVDTEQVHGWNIKPVRFQLSTEDGQHSSSQCMLTE-----------AGNWSHYHAGDFVVGKSKSSSTKIKFSMTQIDCTHTKGGLCVDSVVVYPSSCKDR 285
BLAST of rna-KK1_010194 vs. DB:Swiss
Match: P2A14_ARATH (F-box protein PP2-A14 OS=Arabidopsis thaliana OX=3702 GN=PP2A14 PE=1 SV=1) HSP 1 Score: 265.388 bits (677), Expect = 3.698e-87 Identity = 131/276 (47.46%), Postives = 176/276 (63.77%), Query Frame = 1 Query: 52 GLGDIPEGCVARVFLHLTPPEICNLARLNRSFRGAASADSVWEAKLPPNYHDLLLLMPPERHQH-------LSKKNIFALLSRPVPFDHGYKEVWLDRVTGRVCISISAKAMSITGIDDRRYWTWLPTEESRFNTVAYLQQIWWFEVDGEVNFPLPADIYTLSFRLHLGRFSKRLGRRVCNYEHTHGWDIKPVRFQLSTMDGQQASFECCLDENEPDDAHGNHKRGHWVDYKVGEFIVSGSEPTTKVRFSMKQIDCTHSKGGLCVDSVFIIPSNLR 858 GL D+PE C+ +F+++ PPEIC LAR+N+SF A+ +D+VWE KLP NY L+ + ++ Q KK I+A L RP FD G KE WLD+ +G+V ++IS KAM ITGIDDRRYW + ++ESRF ++ YL+QIWW E G++ F Y+L F++ LG+ ++ GR+ C+ + HGWDIKPVRFQLST DGQ A E LDE+ G WV + G+F+V V+FSM QIDCTH+KGGLC+D V I P R Sbjct: 20 GLEDVPENCITAMFMYMEPPEICLLARVNKSFHRASRSDAVWEDKLPSNYKFLVRRILEDQQQVGVKDKLIYRKKEIYARLCRPNLFDTGTKEAWLDKRSGKVFLAISPKAMKITGIDDRRYWEHISSDESRFGSITYLRQIWWLEAVGKIRFEFAPGKYSLLFKIQLGKPIRKCGRKTCSLDQVHGWDIKPVRFQLSTSDGQCAMSERHLDES-----------GRWVYHHAGDFVVENQNSPVWVKFSMLQIDCTHTKGGLCLDCVIICPFEYR 284
BLAST of rna-KK1_010194 vs. DB:Swiss
Match: P2B10_ARATH (F-box protein PP2-B10 OS=Arabidopsis thaliana OX=3702 GN=PP2B10 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 1.432e-27 Identity = 72/269 (26.77%), Postives = 122/269 (45.35%), Query Frame = 1 Query: 67 PEGCVARVFLHLTPPEICNLARLNRSFRGAASADSVWEAKLPPNYHDLLLLMPPERHQHLSKKNIFALLSRPVPFDHGYKEVWLDRVTGRVCISISAKAMSITGIDDRRYWTWLPTEESRFNTVAYLQQIWWFEVDGEVNFPLPADIYTLSFRLHLGRFSKRLGRRVCNYEHTHGWDIKPVRFQLSTMDGQQAS-----FECCLDENEPDDAHGNHKRGHWVDYKVGEFIVSGS-EPTTKVRFSMKQIDCTHSKGGLCVDSVFIIPSNL 855 PE C++ + P + C A ++++F +D +WE LP +Y L+ PP R K+ F+L + PV FD K VWL++ +G+ C+ +SA +SI D+ +YW W+P ESRF VA L+ + WFE+ G N LS R + G C +G+ + + + GQ+ S F + + + W++ ++GEF G ++ S + + K GL + + I P+ + Sbjct: 18 PEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLI---PPSRVFSSKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIPESRFEKVAKLRDVCWFEIRGRTN------TRVLSPRTRYSAYIVFKGVDKC-----YGFQNVAIEAAVGVV-GQEPSRRLICFSEAIRRGRRNVVKPKQREDGWMEIELGEFFNDGGIMDNDEIEMSALETKQLNRKCGLIIQGIEIRPAKI 271
BLAST of rna-KK1_010194 vs. DB:Swiss
Match: PP2B8_ARATH (Putative F-box protein PP2-B8 OS=Arabidopsis thaliana OX=3702 GN=PP2B8 PE=4 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.971e-26 Identity = 80/281 (28.47%), Postives = 133/281 (47.33%), Query Frame = 1 Query: 55 LGDIPEGCVARVFLHLTPPEICNLARLNRSFRGAASADSVWEAKLPPNYHDLLLLMPPERHQHLSKKNI-FALLSRPVPFDHGYKEVWLDRVTGRVCISISAKAMSITGIDDRRYWTWLPTEESRFNTVAYLQQIWWFEVDGEVNFPLPADIYTLSFRLHLGRFSKRLGRRVC-NYEHTHGWDIKPVRFQ-LSTMDGQQASFECCLDENEPDDAHGNH------KRGHWVDYKVGEFIVSG----SEPTTKVRFSMKQIDCTHSKGGLCVDSVFIIPSNLR 858 L D+PE CV+ + +P + C LA ++++F A +D VWE +PP Y L+ + LSKK + FAL + V D G K +W+++ + CI ISA ++I + + W W+P ++RF TVA L ++ FE+ G +N + + + R K+L +C +E+ + V Q L + F+ +DE G + ++ W++ K+GEF G + V KQ H K GL + + I P+N+R Sbjct: 36 LDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLI--SQSRAFKFLSKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPDPQARFETVAELLEVCLFEIRGRIN----SRVISPKTRYSAYIVYKKLN--ICYGFENVAVEVVVGVVGQDLEESCRRYICFDETMDEQFRRRDRGKNLVKPERRKDGWMEIKIGEFFNEGGLLNDDEIEMVALEAKQ---RHWKRGLIIQGIEIRPTNIR 305
BLAST of rna-KK1_010194 vs. DB:Swiss
Match: PP2B1_ARATH (F-box protein PP2-B1 OS=Arabidopsis thaliana OX=3702 GN=PP2B1 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.202e-26 Identity = 52/142 (36.62%), Postives = 84/142 (59.15%), Query Frame = 1 Query: 64 IPEGCVARVFLHLTPPEICNLARLNRSFRGAASADSVWEAKLPPNYHDLLLLMPPERHQHLSKKNIF-ALLSRPVPFDHGYKEVWLDRVTGRVCISISAKAMSITGIDDRRYWTWLPTEESRFNTVAYLQQIWWFEVDGEVN 486 +PE C+++V H +P + C +A +++S + AA +D VWE LP Y L+L + HLSKK IF +L V ++G K W+++ +G+ C +SA ++I D YW W+ ES+F VA L+ + WFEV G+++ Sbjct: 35 LPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVL----QSANHLSKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWITVPESKFEKVAELRNVCWFEVRGKIS 172
BLAST of rna-KK1_010194 vs. DB:Swiss
Match: FB95_ARATH (F-box protein At2g02240 OS=Arabidopsis thaliana OX=3702 GN=At2g02240 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.857e-25 Identity = 77/283 (27.21%), Postives = 127/283 (44.88%), Query Frame = 1 Query: 43 VAPGLGD---IPEGCVARVFLHLTPPEICNLARLNRSFRGAASADSVWEAKLPPNYHDLLLLMPPERHQHLSKKNI-FALLSRPVPFDHGYKEVWLDRVTGRVCISISAKAMSITGIDDRRYWTWLPTEESRFNTVAYLQQIWWFEVDGEVNFPL--PADIYT--LSFRLH-----LGRFSKRLGRRVCNYEHTHGWDIKPVRFQLSTMDGQQASFECCLDENEPDDAHGNHKRGHWVDYKVGEFIVSGSEPTTKVRFSMKQIDCTHSKGGLCVDSVFIIPSN 852 V+PG +PE C++ + +P + C A ++++F A S+D VW+ LPP Y L+ SKK + FAL PV + G K WL++ +G+ CI +S+K + IT YW W+ ESRFN +A L + WFE+ G+ + + P Y+ + F+ LG +G + E + RF + D +PD + W++ ++GEF E ++ FS+ +I K GL + + P+ Sbjct: 54 VSPGTSPFDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLV----SRSRVFASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIPESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGLGLVGQESSK-------RFIYFIGPRDRRGRRETRDVTKPD-----QREDGWMEAELGEFF--NEERCDEIEFSVIEIKSPSWKSGLIIQGIEFRPTK 318
BLAST of rna-KK1_010194 vs. DB:Swiss
Match: P2B15_ARATH (F-box protein PP2-B15 OS=Arabidopsis thaliana OX=3702 GN=PP2B15 PE=2 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 9.446e-24 Identity = 73/297 (24.58%), Postives = 134/297 (45.12%), Query Frame = 1 Query: 64 IPEGCVARVFLHLTPPEICNLARLNRSFRGAASADSVWEAKLPPNYHDLLLLMPPERHQHLSKKNIFALLSRPVPFDHGYKEVWLDRVTGRVCISISAKAMSITGIDDRRYWTWLPTEESRFNTVAYLQQIWWFEVDGEVNFPLPADIYTLSFRLHLGRFSKRLGRRVCNYEHTHGWDIKPVRFQLSTMDGQ---QASFECCLDENEP----------DDAHGNHK--RGH----------WVDYKVGEFIVSGSE--PTTKVRFSMKQIDCTHSKGGLCVDSVFIIPSNLRERTGS 873 +PE CVA + TP + + A ++ FR A +D VWE LP +Y ++ SKK ++ L + D+G K +++++G++ +S++ +SIT D R YW+W P +SRF+ L W E+ G++ LS + G + L +V + +G D+ P + +G+ ++++ CLD + + H+ R H W++ ++GEF E +V S+ ++ KGG+ +D + + P L+ R G+ Sbjct: 3 LPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISRSTDPHRIFSSKKELYRCLCESILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPRSDSRFSEGVQLIMTDWLEIIGKIQTG------ALSPNTNYGAY---LIMKVTS--RAYGLDLVPAETSIKVGNGEKKIKSTYLSCLDNKKQQMERVFYGQREQRMATHEVVRSHRREPEVRDDGWMEIELGEFETGSGEGDDDKEVVMSLTEVKGYQLKGGIAIDGIEVRPKPLKVRAGT 288 The following BLAST results are available for this feature:
BLAST of rna-KK1_010194 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_010194_Cc_Asha_v1.0 ID=rna-KK1_010194_Cc_Asha_v1.0; Name=rna-KK1_010194; organism=Cajanus cajan; type=mRNA; length=891bpback to top protein sequence of rna-KK1_010194_Cc_Asha_v1.0 >rna-KK1_010194_Cc_Asha_v1.0 ID=rna-KK1_010194_Cc_Asha_v1.0; Name=rna-KK1_010194_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=296bpback to top mRNA from alignment at Chr_3-CM003605.1:19326477..19330437+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_010194_Cc_Asha_v1.0 ID=rna-KK1_010194_Cc_Asha_v1.0; Name=rna-KK1_010194; organism=Cajanus cajan; type=mRNA; length=3961bp; location=Sequence derived from: Chr_3-CM003605.1:19326477..19330437+ (Cajanus cajanback to top Coding sequence (CDS) from alignment at Chr_3-CM003605.1:19326477..19330437+ >rna-KK1_010194_Cc_Asha_v1.0 ID=rna-KK1_010194_Cc_Asha_v1.0; Name=rna-KK1_010194; organism=Cajanus cajan; type=CDS; length=1782bp; location=Sequence derived from: Chr_3-CM003605.1:19326477..19330437+ (Cajanus cajanback to top |