rna-KK1_021919

Transcript Overview
Namerna-KK1_021919
Unique Namerna-KK1_021919_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length279
ProductAuxin-induced protein X10A
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_4-CM003606.1supercontigChr_4-CM003606.1:4002779..4003057 -Cajanus cajan Asha genome v1.0n/a
Chr_4-CM003606.1supercontigChr_4-CM003606.1:4002779..4003057 -Cajanus cajan Asha genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cccrR0813Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cccrR0830Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccpsR709Pisum sativum Cameor genome v1aPisum sativum
ccpsR728Pisum sativum Cameor genome v1aPisum sativum
ccpsR735Pisum sativum Cameor genome v1aPisum sativum
ccpsR737Pisum sativum Cameor genome v1aPisum sativum
ccccR216Cajanus cajan Asha genome v1.0Cajanus cajan
caiccL0799Cicer arietinum ICC 4958 genome v2Cicer arietinum
ccpvR1016Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR1038Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuR0992Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR1027Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR1028Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR1029Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anccL0361Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1247Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1354Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1451Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asccL0222Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cctifR0862Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR0883Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0864Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvrvR0879Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvuaR0906Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvssR0977Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvssR0984Vicia sativa cv. Studenica genome v1.0Vicia sativa
avjccL0120Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ccccaR1094Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR1031Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR1037Vigna umbellata FF25 genome v1.0Vigna umbellata

Orthologs
Gene/TranscriptAssemblySpecies
rna-TanjilR_17346Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vum_06G01627.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Cr_14202.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
LR48_mrnaVigan08g179100Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_021919gene-KK1_021919_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_021919rna-KK1_021919_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_021919_Cc_Asha_v1.0rna-KK1_021919_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_021919_Cc_Asha_v1.0-CDS-Chr_4-CM003606.1_Cc_Asha_v1.0-1571847872:4002779..4003057rna-KK1_021919_Cc_Asha_v1.0-CDS-Chr_4-CM003606.1_Cc_Asha_v1.0-1571847872:4002779..4003057Cajanus cajanCDS
rna-KK1_021919_Cc_Asha_v1.0-CDS-Chr_4-CM003606.1_Cc_Asha_v1.0-1571082112:4002779..4003057rna-KK1_021919_Cc_Asha_v1.0-CDS-Chr_4-CM003606.1_Cc_Asha_v1.0-1571082112:4002779..4003057Cajanus cajanCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_021919_Cc_Asha_v1.0-exon-Chr_4-CM003606.1_Cc_Asha_v1.0-1571847872:4002779..4003057rna-KK1_021919_Cc_Asha_v1.0-exon-Chr_4-CM003606.1_Cc_Asha_v1.0-1571847872:4002779..4003057Cajanus cajanexon
rna-KK1_021919_Cc_Asha_v1.0-exon-Chr_4-CM003606.1_Cc_Asha_v1.0-1571082112:4002779..4003057rna-KK1_021919_Cc_Asha_v1.0-exon-Chr_4-CM003606.1_Cc_Asha_v1.0-1571082112:4002779..4003057Cajanus cajanexon


Homology
BLAST of rna-KK1_021919 vs. DB:Swiss
Match: AX6B_SOYBN (Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.555e-48
Identity = 69/90 (76.67%), Postives = 80/90 (88.89%), Query Frame = 1
Query:    1 MGFRFAAIRRASFTARKAASKSVEVPKGYLAVYVGEKQKRFMIPISYLNQPSFQDLLGQAEEEFGYDHPMGGLTIPCSEDIFQHITSHLN 270
            MGFR   IR+ASF+A +A+SK+V+V KGYLAVYVGEK +RF+IP+SYLN+PSFQDLL QAEEEFGY HP GGLTIPCSED+FQHITS LN
Sbjct:    1 MGFRLPGIRKASFSANQASSKAVDVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHITSFLN 90          
BLAST of rna-KK1_021919 vs. DB:Swiss
Match: AX10A_SOYBN (Auxin-induced protein X10A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.725e-48
Identity = 68/90 (75.56%), Postives = 76/90 (84.44%), Query Frame = 1
Query:    1 MGFRFAAIRRASFTARKAASKSVEVPKGYLAVYVGEKQKRFMIPISYLNQPSFQDLLGQAEEEFGYDHPMGGLTIPCSEDIFQHITSHLN 270
            MGFR   IR+ S  A +A+SKSVEVPKGYL VYVG+K +RF+IP+SYLNQPSFQDLL QAEEEFGYDHPMGGLTIPC ED F  +TSHLN
Sbjct:    1 MGFRLPGIRKTSIAANQASSKSVEVPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDEFLTVTSHLN 90          
BLAST of rna-KK1_021919 vs. DB:Swiss
Match: ARG7_VIGRR (Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata OX=3916 GN=ARG7 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.803e-45
Identity = 65/92 (70.65%), Postives = 75/92 (81.52%), Query Frame = 1
Query:    1 MGFRFAAIRRASFTARKAASKSVEVPKGYLAVYVGEKQKRFMIPISYLNQPSFQDLLGQAEEEFGYDHPMGGLTIPCSEDIFQHITSHLNGQ 276
            MGFR   IR+      +A+SK ++ PKGYLAVYVGE  KRF+IP+S+LNQP FQDLL QAEEEFGYDHPMGGLTIPCSED+FQHITS L+ Q
Sbjct:    1 MGFRLPGIRKTLSARNEASSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQHITSCLSAQ 92          
BLAST of rna-KK1_021919 vs. DB:Swiss
Match: A10A5_SOYBN (Auxin-induced protein 10A5 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.250e-44
Identity = 65/91 (71.43%), Postives = 76/91 (83.52%), Query Frame = 1
Query:    1 MGFRFAAI-RRASFTARKAASKSVEVPKGYLAVYVGEKQKRFMIPISYLNQPSFQDLLGQAEEEFGYDHPMGGLTIPCSEDIFQHITSHLN 270
            MGFR A I RR SF   +AASK V+VPKGY AVYVG+K +RF IP+SYLN+PSFQ+LL QAEEEFGYDHPMGGLTIPC E+ F ++T+HLN
Sbjct:    1 MGFRIAGIVRRTSFYTTQAASKRVDVPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEEFLNVTAHLN 91          
BLAST of rna-KK1_021919 vs. DB:Swiss
Match: AX15A_SOYBN (Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.074e-44
Identity = 67/90 (74.44%), Postives = 73/90 (81.11%), Query Frame = 1
Query:    1 MGFRFAAIRRASFTARKAASKSVEVPKGYLAVYVGEKQKRFMIPISYLNQPSFQDLLGQAEEEFGYDHPMGGLTIPCSEDIFQHITSHLN 270
            MGFR   IR+AS        K+ + PKGYLAVYVGEK KRF+IP+SYLNQPSFQDLL QAEEEFGYDHPMGGLTIPCSED+FQ ITS LN
Sbjct:    1 MGFRLPGIRKAS--------KAADAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQCITSCLN 82          
BLAST of rna-KK1_021919 vs. DB:Swiss
Match: AXX15_SOYBN (Auxin-induced protein X15 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.765e-42
Identity = 64/90 (71.11%), Postives = 72/90 (80.00%), Query Frame = 1
Query:    1 MGFRFAAIRRASFTARKAASKSVEVPKGYLAVYVGEKQKRFMIPISYLNQPSFQDLLGQAEEEFGYDHPMGGLTIPCSEDIFQHITSHLN 270
            MGFR   IR+AS         +V+ PKGYLAVYVGEK KRF+IP+SY+NQPSFQDLL QAEEEFGYDHPMGGLTIPCSE++FQ IT  LN
Sbjct:    1 MGFRLPGIRKAS--------NAVDAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQRITCCLN 82          
BLAST of rna-KK1_021919 vs. DB:Swiss
Match: SAU23_ARATH (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana OX=3702 GN=SAUR23 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.023e-33
Identity = 53/89 (59.55%), Postives = 68/89 (76.40%), Query Frame = 1
Query:   19 AIRRASFTARKAASKSVEV----PKGYLAVYVGEKQK-RFMIPISYLNQPSFQDLLGQAEEEFGYDHPMGGLTIPCSEDIFQHITSHLN 270
            A+ R+   A+K  S+S       PKG+LAVYVGE QK R+++P+SYLNQPSFQ LL ++EEEFG+DHPMGGLTIPC ED F ++TS L+
Sbjct:    2 ALVRSLLVAKKILSRSAAAVSAPPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFINVTSRLH 90          
BLAST of rna-KK1_021919 vs. DB:Swiss
Match: SAU24_ARATH (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.470e-32
Identity = 53/88 (60.23%), Postives = 66/88 (75.00%), Query Frame = 1
Query:   19 AIRRASFTARKAASKSV----EVPKGYLAVYVGEKQK-RFMIPISYLNQPSFQDLLGQAEEEFGYDHPMGGLTIPCSEDIFQHITSHL 267
            A  R+   A+K  S+S       PKG+LAVYVGE QK R+++P+SYLNQPSFQ LL ++EEEFG+DHPMGGLTIPC ED F ++TS L
Sbjct:    2 AFVRSLLGAKKILSRSTGAGSAAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFINVTSRL 89          
BLAST of rna-KK1_021919 vs. DB:Swiss
Match: SAU22_ARATH (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana OX=3702 GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.751e-32
Identity = 52/88 (59.09%), Postives = 67/88 (76.14%), Query Frame = 1
Query:   19 AIRRASFTARKAASKSVEV----PKGYLAVYVGEKQK-RFMIPISYLNQPSFQDLLGQAEEEFGYDHPMGGLTIPCSEDIFQHITSHL 267
            A+ R+   A+K  S+S       PKG+LAVYVGE QK R+++P+SYLNQPSFQ LL ++E+EFG+DHPMGGLTIPC ED F ++TS L
Sbjct:    2 ALVRSLLGAKKILSRSTAAVSAAPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEFGFDHPMGGLTIPCHEDTFINVTSRL 89          
BLAST of rna-KK1_021919 vs. DB:Swiss
Match: SAU21_ARATH (Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana OX=3702 GN=SAUR21 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.688e-32
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 1
Query:   19 AIRRASFTARKAASKSVE--VPKGYLAVYVGEKQK-RFMIPISYLNQPSFQDLLGQAEEEFGYDHPMGGLTIPCSEDIFQHITSHLN 270
            A+ R+   A+K  S+S     PKG+LAVYVGE QK R+++P+SYL+QPSFQ LL ++EEEFG+DHPMGGLTIPC ED F ++TS L 
Sbjct:    2 ALVRSLLGAKKILSRSTASAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFINVTSRLQ 88          
The following BLAST results are available for this feature:
BLAST of rna-KK1_021919 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
AX6B_SOYBN1.555e-4876.67Auxin-induced protein 6B OS=Glycine max OX=3847 PE... [more]
AX10A_SOYBN1.725e-4875.56Auxin-induced protein X10A OS=Glycine max OX=3847 ... [more]
ARG7_VIGRR5.803e-4570.65Indole-3-acetic acid-induced protein ARG7 OS=Vigna... [more]
A10A5_SOYBN5.250e-4471.43Auxin-induced protein 10A5 OS=Glycine max OX=3847 ... [more]
AX15A_SOYBN6.074e-4474.44Auxin-induced protein 15A OS=Glycine max OX=3847 P... [more]
AXX15_SOYBN1.765e-4271.11Auxin-induced protein X15 OS=Glycine max OX=3847 P... [more]
SAU23_ARATH9.023e-3359.55Auxin-responsive protein SAUR23 OS=Arabidopsis tha... [more]
SAU24_ARATH4.470e-3260.23Auxin-responsive protein SAUR24 OS=Arabidopsis tha... [more]
SAU22_ARATH5.751e-3259.09Auxin-responsive protein SAUR22 OS=Arabidopsis tha... [more]
SAU21_ARATH6.688e-3259.77Auxin-responsive protein SAUR21 OS=Arabidopsis tha... [more]
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InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003676Small auxin-up RNAPFAMPF02519Auxin_induciblecoord: 10..88
e-value: 4.1E-27
score: 94.2

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_021919_Cc_Asha_v1.0 ID=rna-KK1_021919_Cc_Asha_v1.0; Name=rna-KK1_021919; organism=Cajanus cajan; type=mRNA; length=279bp
ATGGGTTTCCGTTTTGCTGCTATTCGACGGGCATCATTCACAGCCCGCAA
AGCAGCTTCAAAATCAGTAGAAGTCCCAAAGGGCTATCTTGCAGTGTATG
TTGGAGAGAAACAGAAGCGGTTTATGATTCCCATATCATACTTGAATCAA
CCTTCATTCCAAGACTTACTGGGTCAAGCTGAGGAAGAGTTTGGATATGA
TCATCCCATGGGTGGCCTCACAATTCCCTGCAGTGAAGATATCTTCCAAC
ATATAACTTCTCACTTGAATGGACAATAA
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protein sequence of rna-KK1_021919_Cc_Asha_v1.0

>rna-KK1_021919_Cc_Asha_v1.0 ID=rna-KK1_021919_Cc_Asha_v1.0; Name=rna-KK1_021919_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=92bp
MGFRFAAIRRASFTARKAASKSVEVPKGYLAVYVGEKQKRFMIPISYLNQ
PSFQDLLGQAEEEFGYDHPMGGLTIPCSEDIFQHITSHLNGQ
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mRNA from alignment at Chr_4-CM003606.1:4002779..4003057-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_021919_Cc_Asha_v1.0 ID=rna-KK1_021919_Cc_Asha_v1.0; Name=rna-KK1_021919; organism=Cajanus cajan; type=mRNA; length=279bp; location=Sequence derived from: Chr_4-CM003606.1:4002779..4003057- (Cajanus cajan
ATGGGTTTCCGTTTTGCTGCTATTCGACGGGCATCATTCACAGCCCGCAA AGCAGCTTCAAAATCAGTAGAAGTCCCAAAGGGCTATCTTGCAGTGTATG TTGGAGAGAAACAGAAGCGGTTTATGATTCCCATATCATACTTGAATCAA CCTTCATTCCAAGACTTACTGGGTCAAGCTGAGGAAGAGTTTGGATATGA TCATCCCATGGGTGGCCTCACAATTCCCTGCAGTGAAGATATCTTCCAAC ATATAACTTCTCACTTGAATGGACAATAA
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Coding sequence (CDS) from alignment at Chr_4-CM003606.1:4002779..4003057-

>rna-KK1_021919_Cc_Asha_v1.0 ID=rna-KK1_021919_Cc_Asha_v1.0; Name=rna-KK1_021919; organism=Cajanus cajan; type=CDS; length=558bp; location=Sequence derived from: Chr_4-CM003606.1:4002779..4003057- (Cajanus cajan
ATGGGTTTCCGTTTTGCTGCTATTCGACGGGCATCATTCACAGCCCGCAA
AGCAGCTTCAAAATCAGTAGAAGTCCCAAAGGGCTATCTTGCAGTGTATG
TTGGAGAGAAACAGAAGCGGTTTATGATTCCCATATCATACTTGAATCAA
CCTTCATTCCAAGACTTACTGGGTCAAGCTGAGGAAGAGTTTGGATATGA
TCATCCCATGGGTGGCCTCACAATTCCCTGCAGTGAAGATATCTTCCAAC
ATATAACTTCTCACTTGAATGGACAATAAATGGGTTTCCGTTTTGCTGCT
ATTCGACGGGCATCATTCACAGCCCGCAAAGCAGCTTCAAAATCAGTAGA
AGTCCCAAAGGGCTATCTTGCAGTGTATGTTGGAGAGAAACAGAAGCGGT
TTATGATTCCCATATCATACTTGAATCAACCTTCATTCCAAGACTTACTG
GGTCAAGCTGAGGAAGAGTTTGGATATGATCATCCCATGGGTGGCCTCAC
AATTCCCTGCAGTGAAGATATCTTCCAACATATAACTTCTCACTTGAATG
GACAATAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003676SAUR_fam
Vocabulary: Biological Process
TermDefinition
GO:0009733response to auxin