rna-KK1_016041

Transcript Overview
Namerna-KK1_016041
Unique Namerna-KK1_016041_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length441
ProductUncharacterized protein At1g14870 family
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_8-CM003610.1supercontigChr_8-CM003610.1:2464673..2465385 -Cajanus cajan Asha genome v1.0n/a
Chr_8-CM003610.1supercontigChr_8-CM003610.1:2464673..2465385 -Cajanus cajan Asha genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cccrR0084Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cccrR0094Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccpsR080Pisum sativum Cameor genome v1aPisum sativum
ccpsR084Pisum sativum Cameor genome v1aPisum sativum
ccpvR0068Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0074Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuR0059Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0061Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caiccL0682Cicer arietinum ICC 4958 genome v2Cicer arietinum
caiccL0688Cicer arietinum ICC 4958 genome v2Cicer arietinum
caiccL0694Cicer arietinum ICC 4958 genome v2Cicer arietinum
caccL0734Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccL0587Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0917Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1183Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asccL1011Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cctifR0103Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR0105Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0066Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvrvR0101Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvuaR0054Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvuaR0064Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvssR0099Vicia sativa cv. Studenica genome v1.0Vicia sativa
canccL0740Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjccL0338Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL1111Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carccL0789Cicer arietinum
carccL0799Cicer arietinum
ccccaR0076Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0113Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR0055Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0078Vigna umbellata FF25 genome v1.0Vigna umbellata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_016041gene-KK1_016041_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_016041rna-KK1_016041_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_016041_Cc_Asha_v1.0rna-KK1_016041_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_016041_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:2465304..2465385rna-KK1_016041_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:2465304..2465385Cajanus cajanCDS
rna-KK1_016041_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:2465154..2465225rna-KK1_016041_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:2465154..2465225Cajanus cajanCDS
rna-KK1_016041_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:2464838..2465050rna-KK1_016041_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:2464838..2465050Cajanus cajanCDS
rna-KK1_016041_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:2464673..2464746rna-KK1_016041_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:2464673..2464746Cajanus cajanCDS
rna-KK1_016041_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:2465304..2465385rna-KK1_016041_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:2465304..2465385Cajanus cajanCDS
rna-KK1_016041_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:2465154..2465225rna-KK1_016041_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:2465154..2465225Cajanus cajanCDS
rna-KK1_016041_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:2464838..2465050rna-KK1_016041_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:2464838..2465050Cajanus cajanCDS
rna-KK1_016041_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:2464673..2464746rna-KK1_016041_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:2464673..2464746Cajanus cajanCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_016041_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:2465304..2465385rna-KK1_016041_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:2465304..2465385Cajanus cajanexon
rna-KK1_016041_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:2465154..2465225rna-KK1_016041_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:2465154..2465225Cajanus cajanexon
rna-KK1_016041_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:2464838..2465050rna-KK1_016041_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:2464838..2465050Cajanus cajanexon
rna-KK1_016041_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:2464673..2464746rna-KK1_016041_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:2464673..2464746Cajanus cajanexon
rna-KK1_016041_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:2465304..2465385rna-KK1_016041_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:2465304..2465385Cajanus cajanexon
rna-KK1_016041_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:2465154..2465225rna-KK1_016041_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:2465154..2465225Cajanus cajanexon
rna-KK1_016041_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:2464838..2465050rna-KK1_016041_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:2464838..2465050Cajanus cajanexon
rna-KK1_016041_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:2464673..2464746rna-KK1_016041_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:2464673..2464746Cajanus cajanexon


Homology
BLAST of rna-KK1_016041 vs. DB:Swiss
Match: PCR2_ARATH (Protein PLANT CADMIUM RESISTANCE 2 OS=Arabidopsis thaliana OX=3702 GN=PCR2 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.247e-52
Identity = 79/146 (54.11%), Postives = 104/146 (71.23%), Query Frame = 1
Query:   13 KPKAQAQVDWSTGLCDCFSNFGNCCLTLWCPCVTFGRIANVVDKGSTTCGGSGTLYTVVCCLLGCGWIYSCLYRSKMRREYMLKDSPCCDCLVHCCCEPCALCQEFRELENRGFDMAIGWHGNVEK--GNGGVPK-APAVQ-PMTR 438
              K  A+ +WSTG CDCFS+  NCC+T WCPC+TFG++A +VD+GST+CG +G LY ++  + GC  IYSC YR KMR +Y +K   C DCL H CCE C+L Q++REL++RG+DM++GW GNVE+    GGV   AP  Q  MTR
Sbjct:    7 HAKPHAEGEWSTGFCDCFSDCKNCCITFWCPCITFGQVAEIVDRGSTSCGTAGALYALIAVVTGCACIYSCFYRGKMRAQYNIKGDDCTDCLKHFCCELCSLTQQYRELKHRGYDMSLGWAGNVERQQNQGGVAMGAPVFQGGMTR 152          
BLAST of rna-KK1_016041 vs. DB:Swiss
Match: PCR3_ARATH (Protein PLANT CADMIUM RESISTANCE 3 OS=Arabidopsis thaliana OX=3702 GN=PCR3 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 8.306e-51
Identity = 76/141 (53.90%), Postives = 104/141 (73.76%), Query Frame = 1
Query:   13 KPKAQAQVDWSTGLCDCFSNFGNCCLTLWCPCVTFGRIANVVDKGSTTCGGSGTLYTVVCCLLGCGWIYSCLYRSKMRREYMLKDSPCCDCLVHCCCEPCALCQEFRELENRGFDMAIGWHGNVEK--GNGGVPK-APAVQ 426
            +    A+ +WSTG CDCFS+  NCC+T  CPC+TFG++A++VD+G+T+CG +G LY ++  + GCG +YSC+YR K+R +Y ++   C DCL H CCE CAL QE+REL++RGFDM++GW GNVEK    GGV   APA Q
Sbjct:    7 QANPHAEGEWSTGFCDCFSDCQNCCITWLCPCITFGQVADIVDRGNTSCGTAGALYVLLAAITGCGCLYSCIYRGKIRAQYNIRGDGCTDCLKHFCCELCALTQEYRELKHRGFDMSLGWAGNVEKQQNQGGVAMGAPAFQ 147          
BLAST of rna-KK1_016041 vs. DB:Swiss
Match: CNR10_MAIZE (Cell number regulator 10 OS=Zea mays OX=4577 GN=CNR10 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.449e-50
Identity = 73/123 (59.35%), Postives = 93/123 (75.61%), Query Frame = 1
Query:   16 PKAQAQVDWSTGLCDCFSNFGNCCLTLWCPCVTFGRIANVVDKGSTTCGGSGTLYTVVCCLLGCGWIYSCLYRSKMRREYMLKDSPCCDCLVHCCCEPCALCQEFRELENRGFDMAIGWHGNV 384
            P A +Q  WS+GL DCF + G CCLT WCPC+TFGR+A +VD+G+T+CG +G LY V+    GC WIYSC YR+KMR +  L ++PCCDCLVH CCEPCALCQ+++EL+ RGFD  +GW  N 
Sbjct:   25 PAASSQ--WSSGLLDCFDDCGLCCLTCWCPCITFGRVAEIVDRGATSCGTAGALYAVLAYFTGCQWIYSCTYRAKMRAQLGLPETPCCDCLVHFCCEPCALCQQYKELKARGFDPVLGWDRNA 145          
BLAST of rna-KK1_016041 vs. DB:Swiss
Match: PCR1_ARATH (Protein PLANT CADMIUM RESISTANCE 1 OS=Arabidopsis thaliana OX=3702 GN=PCR1 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 7.141e-48
Identity = 77/146 (52.74%), Postives = 100/146 (68.49%), Query Frame = 1
Query:   13 KPKAQAQVDWSTGLCDCFSNFGNCCLTLWCPCVTFGRIANVVDKGSTTCGGSGTLYTVVCCLLGCGWIYSCLYRSKMRREYMLKDSPCCDCLVHCCCEPCALCQEFRELENRGFDMAIGWHGNVEK--GNGGVPK-APAVQ-PMTR 438
              K  AQ +WSTG CDCFS+  NCC+TL CPC+TFG++A +VD+GS +C  +G LY ++  +  CG +Y+C Y  KMR +Y +K   C DCL H CC  CAL Q++REL++RGFDM++GW GN EK    GGV   APA Q  MTR
Sbjct:    6 HAKPHAQGEWSTGFCDCFSDCRNCCITLCCPCITFGQVAEIVDRGSKSCCAAGALYMLIDLITSCGRMYACFYSGKMRAQYNIKGDGCTDCLKHFCCNLCALTQQYRELKHRGFDMSLGWAGNAEKQQNQGGVAMGAPAFQGGMTR 151          
BLAST of rna-KK1_016041 vs. DB:Swiss
Match: PCR11_ARATH (Protein PLANT CADMIUM RESISTANCE 11 OS=Arabidopsis thaliana OX=3702 GN=PCR11 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.119e-45
Identity = 81/141 (57.45%), Postives = 103/141 (73.05%), Query Frame = 1
Query:   37 DWSTGLCDCFSNFGNCCLTLWCPCVTFGRIANVVDKGSTTCGGSGTLYTVVCCLLGCG--WIYSCLYRSKMRREYMLKDSPCCDCLVHCCCEPCALCQEFRELE-NRGFDMAIGWHGNVEKG---NGGVPKAPAVQ-PMTR 438
            DWST LC+C+ +  +CCLT WCPCV FGRIA VVD+GST+CG SG +Y ++  L G G   +YSC YR+K+R +Y LK+ PCCDC VH CCEPCALCQE+R+L+ NR  D+ IGWHGN+E+        P AP +Q PM+R
Sbjct:   18 DWSTDLCECWMDINSCCLTCWCPCVAFGRIAEVVDRGSTSCGVSGAMYMIIFMLTGYGGSSLYSCFYRTKLRAQYNLKERPCCDCCVHFCCEPCALCQEYRQLQHNRDLDLVIGWHGNMERHARLAASTPSAPPLQAPMSR 158          
BLAST of rna-KK1_016041 vs. DB:Swiss
Match: CNR3_MAIZE (Cell number regulator 3 OS=Zea mays OX=4577 GN=CNR3 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.059e-43
Identity = 68/144 (47.22%), Postives = 93/144 (64.58%), Query Frame = 1
Query:   16 PKAQAQVDWSTGLCDCFSNFGNCCLTLWCPCVTFGRIANVVDKGSTTCGGSGTLYTVVCCLLG--CGWIYSCLYRSKMRREYMLKDSPCCDCLVHCCCEPCALCQEFRELENRGFDMAIGWHGNVEKGNGGVPK-APAVQPMTR 438
            P A    +WS+ L DCF +F  CC+T WCPC+TFGR A +VD G T+CG S  L+ ++  L G  C W +SC YR+++R ++ L ++PC D LVH CC  CALCQE+REL+ RG++  +GW  N ++   GV    PA Q M R
Sbjct:   24 PVAGEAREWSSRLLDCFDDFDICCMTFWCPCITFGRTAEIVDHGMTSCGTSAALFALIQWLSGSQCTWAFSCTYRTRLRAQHGLPEAPCADFLVHLCCLHCALCQEYRELKARGYEPVLGWEFNAQRAAAGVAMCPPASQGMGR 167          
BLAST of rna-KK1_016041 vs. DB:Swiss
Match: CNR1_MAIZE (Cell number regulator 1 OS=Zea mays OX=4577 GN=CNR1 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.140e-43
Identity = 67/117 (57.26%), Postives = 86/117 (73.50%), Query Frame = 1
Query:   40 WSTGLCDCFSNFGNCCLTLWCPCVTFGRIANVVDKGSTTCGGSGTLYTVVCCLLGCGWIYSCLYRSKMRREYMLKDSPCCDCLVHCCCEPCALCQEFRELENRGFDMAIGWHGNVEK 390
            WSTGL  C  + GNC +T  CPCVTFG++A++VDKG+  C  SG +Y ++C   G G +YSCLYRSK+R EY L +  C D LVHCCCE  ALCQE+REL+NRGFD+ IGW  N+++
Sbjct:   51 WSTGLFHCMDDPGNCLITCLCPCVTFGQVADIVDKGTCPCIASGLVYGLICASTGMGCLYSCLYRSKLRAEYDLDEGECPDILVHCCCEHLALCQEYRELKNRGFDLGIGWEANMDR 167          
BLAST of rna-KK1_016041 vs. DB:Swiss
Match: CNR11_MAIZE (Cell number regulator 11 OS=Zea mays OX=4577 GN=CNR11 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.821e-40
Identity = 75/143 (52.45%), Postives = 89/143 (62.24%), Query Frame = 1
Query:    1 MSAPKPKAQAQV--DWSTGLCDCFSNFGNCCLTLWCPCVTFGRIANVVDKGSTTCGGSGTLYTVVCCLLGCGWIYSCLYRSKMRREYMLKDSPCCDCLVHCCCEPCALCQEFRELENRGFDMAIGWHGNVEKGNGGVPKAPAV 423
            M A  P A   +  +WS GLCDCF +   CCLTLWCPCVTFGR A +VD+GST C  SGTLY ++   +G  W+Y C  RS MR +Y L++SPC DC VH  C PCALCQE+ EL+ RGF MA        KG    P  P V
Sbjct:   26 MEALSPLADQSMPGEWSVGLCDCFGDLHTCCLTLWCPCVTFGRTAEIVDRGSTCCM-SGTLYYLLS-TIGWQWLYGCAKRSSMRSQYSLRESPCMDCCVHFWCGPCALCQEYTELQKRGFHMA--------KGISSPPHLPTV 158          
BLAST of rna-KK1_016041 vs. DB:Swiss
Match: CNR7_MAIZE (Cell number regulator 7 OS=Zea mays OX=4577 GN=CNR7 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.096e-40
Identity = 76/126 (60.32%), Postives = 92/126 (73.02%), Query Frame = 1
Query:    1 MSAPKPKAQAQVDWSTGLCDCFSNFGNCCLTLWCPCVTFGRIANVVDKGSTTCGGSGTLYTVVCCLLG--CGWIYSCLYRSKMRREYMLKDSPCCDCLVHCCCEPCALCQEFRELENRGFDMAIGW 372
            +S+P P A A   WS+GLC CF + G CC+T WCPCVTFGRIA VVD+G+T+C  +G +YT++ C  G  C WIYSC YRSKMR +  L D  CCDC VH CCEPCALCQ++REL  RG D A+GW
Sbjct:   28 ISSPGP-AVAASQWSSGLCACFDDCGLCCMTCWCPCVTFGRIAEVVDRGATSCAAAGAIYTLLACFTGFQCHWIYSCTYRSKMRAQLGLPDVGCCDCCVHFCCEPCALCQQYRELRARGLDPALGW 152          
BLAST of rna-KK1_016041 vs. DB:Swiss
Match: PCR6_ARATH (Protein PLANT CADMIUM RESISTANCE 6 OS=Arabidopsis thaliana OX=3702 GN=PCR6 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.805e-40
Identity = 63/132 (47.73%), Postives = 90/132 (68.18%), Query Frame = 1
Query:   37 DWSTGLCDCFSNFGNCCLTLWCPCVTFGRIANVVDKGSTTCGGSGTLYTVVCCLLGCGWIYSCLYRSKMRREYMLKDSPCCDCLVHCCCEPCALCQEFRELENRGFDMAIGWHGNVEKGNGGVPKAPAVQPM 432
            +W++GL DC ++  N  +T   P VTFG+IA V+D+G+T+CG +G LY ++CCL     +Y+C +R+K+R +Y L D+P  D + HC CE CALCQE+REL+NRG D +IGW GNV+K   G  +     PM
Sbjct:   87 NWTSGLFDCMNDGENALITCCFPFVTFGQIAEVIDEGATSCGTAGMLYGLICCLFAIPCVYTCTFRTKLRSKYGLPDAPAPDWITHCFCEYCALCQEYRELKNRGLDPSIGWIGNVQKQRMGQQQEMMAPPM 218          
The following BLAST results are available for this feature:
BLAST of rna-KK1_016041 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
PCR2_ARATH1.247e-5254.11Protein PLANT CADMIUM RESISTANCE 2 OS=Arabidopsis ... [more]
PCR3_ARATH8.306e-5153.90Protein PLANT CADMIUM RESISTANCE 3 OS=Arabidopsis ... [more]
CNR10_MAIZE3.449e-5059.35Cell number regulator 10 OS=Zea mays OX=4577 GN=CN... [more]
PCR1_ARATH7.141e-4852.74Protein PLANT CADMIUM RESISTANCE 1 OS=Arabidopsis ... [more]
PCR11_ARATH8.119e-4557.45Protein PLANT CADMIUM RESISTANCE 11 OS=Arabidopsis... [more]
CNR3_MAIZE1.059e-4347.22Cell number regulator 3 OS=Zea mays OX=4577 GN=CNR... [more]
CNR1_MAIZE4.140e-4357.26Cell number regulator 1 OS=Zea mays OX=4577 GN=CNR... [more]
CNR11_MAIZE2.821e-4052.45Cell number regulator 11 OS=Zea mays OX=4577 GN=CN... [more]
CNR7_MAIZE4.096e-4060.32Cell number regulator 7 OS=Zea mays OX=4577 GN=CNR... [more]
PCR6_ARATH4.805e-4047.73Protein PLANT CADMIUM RESISTANCE 6 OS=Arabidopsis ... [more]
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InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006461PLAC8 motif-containing proteinTIGRFAMTIGR01571TIGR01571coord: 13..115
e-value: 1.2E-31
score: 107.5
IPR006461PLAC8 motif-containing proteinPFAMPF04749PLAC8coord: 14..112
e-value: 4.3E-29
score: 101.4

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_016041_Cc_Asha_v1.0 ID=rna-KK1_016041_Cc_Asha_v1.0; Name=rna-KK1_016041; organism=Cajanus cajan; type=mRNA; length=441bp
ATGTCTGCACCAAAGCCCAAAGCCCAGGCCCAGGTTGATTGGTCCACTGG
CCTCTGTGATTGCTTCTCCAACTTCGGAAACTGTTGCTTGACATTGTGGT
GTCCATGTGTGACGTTTGGGCGAATTGCAAACGTTGTTGACAAGGGATCA
ACGACTTGTGGTGGTAGTGGGACACTTTATACGGTGGTTTGTTGTTTACT
AGGTTGTGGTTGGATATACTCATGTTTGTATCGGTCCAAGATGAGACGAG
AGTACATGTTGAAGGACAGTCCTTGCTGCGATTGCTTGGTTCATTGCTGT
TGTGAACCATGCGCCTTGTGCCAAGAATTTCGTGAGCTTGAAAACCGTGG
TTTTGACATGGCCATTGGGTGGCATGGAAATGTTGAAAAAGGGAATGGAG
GAGTGCCCAAGGCTCCCGCAGTTCAACCCATGACTCGTTGA
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protein sequence of rna-KK1_016041_Cc_Asha_v1.0

>rna-KK1_016041_Cc_Asha_v1.0 ID=rna-KK1_016041_Cc_Asha_v1.0; Name=rna-KK1_016041_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=146bp
MSAPKPKAQAQVDWSTGLCDCFSNFGNCCLTLWCPCVTFGRIANVVDKGS
TTCGGSGTLYTVVCCLLGCGWIYSCLYRSKMRREYMLKDSPCCDCLVHCC
CEPCALCQEFRELENRGFDMAIGWHGNVEKGNGGVPKAPAVQPMTR
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mRNA from alignment at Chr_8-CM003610.1:2464673..2465385-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_016041_Cc_Asha_v1.0 ID=rna-KK1_016041_Cc_Asha_v1.0; Name=rna-KK1_016041; organism=Cajanus cajan; type=mRNA; length=713bp; location=Sequence derived from: Chr_8-CM003610.1:2464673..2465385- (Cajanus cajan
ATGTCTGCACCAAAGCCCAAAGCCCAGGCCCAGGTTGATTGGTCCACTGG CCTCTGTGATTGCTTCTCCAACTTCGGAAACTGTAAGCTAGGCAGCCCCC CATTTTCACACAATAATGTTGATTATTGTTTACATAGATATATCATGCAT TTTGTTTCAGGTTGCTTGACATTGTGGTGTCCATGTGTGACGTTTGGGCG AATTGCAAACGTTGTTGACAAGGGATCAACGAGTAAGAAACTAACCAAGT TTAATATATATATATATATGATTTGATGAAAATGAAAGTAGTAATTAAGT AATCGATGCAAATTGGGGTTTGTTTTGTTTTGCAGCTTGTGGTGGTAGTG GGACACTTTATACGGTGGTTTGTTGTTTACTAGGTTGTGGTTGGATATAC TCATGTTTGTATCGGTCCAAGATGAGACGAGAGTACATGTTGAAGGACAG TCCTTGCTGCGATTGCTTGGTTCATTGCTGTTGTGAACCATGCGCCTTGT GCCAAGAATTTCGTGAGCTTGAAAACCGTGGTTTTGACATGGCCATTGGT AAGTTTACGAGATATTTAATTCAATACTTATGGAGATGATCCACTTCCTT CCTTCCTTCTGTTGAATATATCTATGACTGTTTAATTAGGGTGGCATGGA AATGTTGAAAAAGGGAATGGAGGAGTGCCCAAGGCTCCCGCAGTTCAACC CATGACTCGTTGA
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Coding sequence (CDS) from alignment at Chr_8-CM003610.1:2464673..2465385-

>rna-KK1_016041_Cc_Asha_v1.0 ID=rna-KK1_016041_Cc_Asha_v1.0; Name=rna-KK1_016041; organism=Cajanus cajan; type=CDS; length=882bp; location=Sequence derived from: Chr_8-CM003610.1:2464673..2465385- (Cajanus cajan
ATGTCTGCACCAAAGCCCAAAGCCCAGGCCCAGGTTGATTGGTCCACTGG
CCTCTGTGATTGCTTCTCCAACTTCGGAAACTATGTCTGCACCAAAGCCC
AAAGCCCAGGCCCAGGTTGATTGGTCCACTGGCCTCTGTGATTGCTTCTC
CAACTTCGGAAACTGTTGCTTGACATTGTGGTGTCCATGTGTGACGTTTG
GGCGAATTGCAAACGTTGTTGACAAGGGATCAACGAGTTGCTTGACATTG
TGGTGTCCATGTGTGACGTTTGGGCGAATTGCAAACGTTGTTGACAAGGG
ATCAACGACTTGTGGTGGTAGTGGGACACTTTATACGGTGGTTTGTTGTT
TACTAGGTTGTGGTTGGATATACTCATGTTTGTATCGGTCCAAGATGAGA
CGAGAGTACATGTTGAAGGACAGTCCTTGCTGCGATTGCTTGGTTCATTG
CTGTTGTGAACCATGCGCCTTGTGCCAAGAATTTCGTGAGCTTGAAAACC
GTGGTTTTGACATGGCCATTGCTTGTGGTGGTAGTGGGACACTTTATACG
GTGGTTTGTTGTTTACTAGGTTGTGGTTGGATATACTCATGTTTGTATCG
GTCCAAGATGAGACGAGAGTACATGTTGAAGGACAGTCCTTGCTGCGATT
GCTTGGTTCATTGCTGTTGTGAACCATGCGCCTTGTGCCAAGAATTTCGT
GAGCTTGAAAACCGTGGTTTTGACATGGCCATTGGGTGGCATGGAAATGT
TGAAAAAGGGAATGGAGGAGTGCCCAAGGCTCCCGCAGTTCAACCCATGA
CTCGTTGAGGTGGCATGGAAATGTTGAAAAAGGGAATGGAGGAGTGCCCA
AGGCTCCCGCAGTTCAACCCATGACTCGTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR006461PLAC_motif_containing