rna-KK1_016041
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_016041 vs. DB:Swiss
Match: PCR2_ARATH (Protein PLANT CADMIUM RESISTANCE 2 OS=Arabidopsis thaliana OX=3702 GN=PCR2 PE=1 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 1.247e-52 Identity = 79/146 (54.11%), Postives = 104/146 (71.23%), Query Frame = 1 Query: 13 KPKAQAQVDWSTGLCDCFSNFGNCCLTLWCPCVTFGRIANVVDKGSTTCGGSGTLYTVVCCLLGCGWIYSCLYRSKMRREYMLKDSPCCDCLVHCCCEPCALCQEFRELENRGFDMAIGWHGNVEK--GNGGVPK-APAVQ-PMTR 438 K A+ +WSTG CDCFS+ NCC+T WCPC+TFG++A +VD+GST+CG +G LY ++ + GC IYSC YR KMR +Y +K C DCL H CCE C+L Q++REL++RG+DM++GW GNVE+ GGV AP Q MTR Sbjct: 7 HAKPHAEGEWSTGFCDCFSDCKNCCITFWCPCITFGQVAEIVDRGSTSCGTAGALYALIAVVTGCACIYSCFYRGKMRAQYNIKGDDCTDCLKHFCCELCSLTQQYRELKHRGYDMSLGWAGNVERQQNQGGVAMGAPVFQGGMTR 152
BLAST of rna-KK1_016041 vs. DB:Swiss
Match: PCR3_ARATH (Protein PLANT CADMIUM RESISTANCE 3 OS=Arabidopsis thaliana OX=3702 GN=PCR3 PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 8.306e-51 Identity = 76/141 (53.90%), Postives = 104/141 (73.76%), Query Frame = 1 Query: 13 KPKAQAQVDWSTGLCDCFSNFGNCCLTLWCPCVTFGRIANVVDKGSTTCGGSGTLYTVVCCLLGCGWIYSCLYRSKMRREYMLKDSPCCDCLVHCCCEPCALCQEFRELENRGFDMAIGWHGNVEK--GNGGVPK-APAVQ 426 + A+ +WSTG CDCFS+ NCC+T CPC+TFG++A++VD+G+T+CG +G LY ++ + GCG +YSC+YR K+R +Y ++ C DCL H CCE CAL QE+REL++RGFDM++GW GNVEK GGV APA Q Sbjct: 7 QANPHAEGEWSTGFCDCFSDCQNCCITWLCPCITFGQVADIVDRGNTSCGTAGALYVLLAAITGCGCLYSCIYRGKIRAQYNIRGDGCTDCLKHFCCELCALTQEYRELKHRGFDMSLGWAGNVEKQQNQGGVAMGAPAFQ 147
BLAST of rna-KK1_016041 vs. DB:Swiss
Match: CNR10_MAIZE (Cell number regulator 10 OS=Zea mays OX=4577 GN=CNR10 PE=2 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 3.449e-50 Identity = 73/123 (59.35%), Postives = 93/123 (75.61%), Query Frame = 1 Query: 16 PKAQAQVDWSTGLCDCFSNFGNCCLTLWCPCVTFGRIANVVDKGSTTCGGSGTLYTVVCCLLGCGWIYSCLYRSKMRREYMLKDSPCCDCLVHCCCEPCALCQEFRELENRGFDMAIGWHGNV 384 P A +Q WS+GL DCF + G CCLT WCPC+TFGR+A +VD+G+T+CG +G LY V+ GC WIYSC YR+KMR + L ++PCCDCLVH CCEPCALCQ+++EL+ RGFD +GW N Sbjct: 25 PAASSQ--WSSGLLDCFDDCGLCCLTCWCPCITFGRVAEIVDRGATSCGTAGALYAVLAYFTGCQWIYSCTYRAKMRAQLGLPETPCCDCLVHFCCEPCALCQQYKELKARGFDPVLGWDRNA 145
BLAST of rna-KK1_016041 vs. DB:Swiss
Match: PCR1_ARATH (Protein PLANT CADMIUM RESISTANCE 1 OS=Arabidopsis thaliana OX=3702 GN=PCR1 PE=1 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 7.141e-48 Identity = 77/146 (52.74%), Postives = 100/146 (68.49%), Query Frame = 1 Query: 13 KPKAQAQVDWSTGLCDCFSNFGNCCLTLWCPCVTFGRIANVVDKGSTTCGGSGTLYTVVCCLLGCGWIYSCLYRSKMRREYMLKDSPCCDCLVHCCCEPCALCQEFRELENRGFDMAIGWHGNVEK--GNGGVPK-APAVQ-PMTR 438 K AQ +WSTG CDCFS+ NCC+TL CPC+TFG++A +VD+GS +C +G LY ++ + CG +Y+C Y KMR +Y +K C DCL H CC CAL Q++REL++RGFDM++GW GN EK GGV APA Q MTR Sbjct: 6 HAKPHAQGEWSTGFCDCFSDCRNCCITLCCPCITFGQVAEIVDRGSKSCCAAGALYMLIDLITSCGRMYACFYSGKMRAQYNIKGDGCTDCLKHFCCNLCALTQQYRELKHRGFDMSLGWAGNAEKQQNQGGVAMGAPAFQGGMTR 151
BLAST of rna-KK1_016041 vs. DB:Swiss
Match: PCR11_ARATH (Protein PLANT CADMIUM RESISTANCE 11 OS=Arabidopsis thaliana OX=3702 GN=PCR11 PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 8.119e-45 Identity = 81/141 (57.45%), Postives = 103/141 (73.05%), Query Frame = 1 Query: 37 DWSTGLCDCFSNFGNCCLTLWCPCVTFGRIANVVDKGSTTCGGSGTLYTVVCCLLGCG--WIYSCLYRSKMRREYMLKDSPCCDCLVHCCCEPCALCQEFRELE-NRGFDMAIGWHGNVEKG---NGGVPKAPAVQ-PMTR 438 DWST LC+C+ + +CCLT WCPCV FGRIA VVD+GST+CG SG +Y ++ L G G +YSC YR+K+R +Y LK+ PCCDC VH CCEPCALCQE+R+L+ NR D+ IGWHGN+E+ P AP +Q PM+R Sbjct: 18 DWSTDLCECWMDINSCCLTCWCPCVAFGRIAEVVDRGSTSCGVSGAMYMIIFMLTGYGGSSLYSCFYRTKLRAQYNLKERPCCDCCVHFCCEPCALCQEYRQLQHNRDLDLVIGWHGNMERHARLAASTPSAPPLQAPMSR 158
BLAST of rna-KK1_016041 vs. DB:Swiss
Match: CNR3_MAIZE (Cell number regulator 3 OS=Zea mays OX=4577 GN=CNR3 PE=2 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 1.059e-43 Identity = 68/144 (47.22%), Postives = 93/144 (64.58%), Query Frame = 1 Query: 16 PKAQAQVDWSTGLCDCFSNFGNCCLTLWCPCVTFGRIANVVDKGSTTCGGSGTLYTVVCCLLG--CGWIYSCLYRSKMRREYMLKDSPCCDCLVHCCCEPCALCQEFRELENRGFDMAIGWHGNVEKGNGGVPK-APAVQPMTR 438 P A +WS+ L DCF +F CC+T WCPC+TFGR A +VD G T+CG S L+ ++ L G C W +SC YR+++R ++ L ++PC D LVH CC CALCQE+REL+ RG++ +GW N ++ GV PA Q M R Sbjct: 24 PVAGEAREWSSRLLDCFDDFDICCMTFWCPCITFGRTAEIVDHGMTSCGTSAALFALIQWLSGSQCTWAFSCTYRTRLRAQHGLPEAPCADFLVHLCCLHCALCQEYRELKARGYEPVLGWEFNAQRAAAGVAMCPPASQGMGR 167
BLAST of rna-KK1_016041 vs. DB:Swiss
Match: CNR1_MAIZE (Cell number regulator 1 OS=Zea mays OX=4577 GN=CNR1 PE=2 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 4.140e-43 Identity = 67/117 (57.26%), Postives = 86/117 (73.50%), Query Frame = 1 Query: 40 WSTGLCDCFSNFGNCCLTLWCPCVTFGRIANVVDKGSTTCGGSGTLYTVVCCLLGCGWIYSCLYRSKMRREYMLKDSPCCDCLVHCCCEPCALCQEFRELENRGFDMAIGWHGNVEK 390 WSTGL C + GNC +T CPCVTFG++A++VDKG+ C SG +Y ++C G G +YSCLYRSK+R EY L + C D LVHCCCE ALCQE+REL+NRGFD+ IGW N+++ Sbjct: 51 WSTGLFHCMDDPGNCLITCLCPCVTFGQVADIVDKGTCPCIASGLVYGLICASTGMGCLYSCLYRSKLRAEYDLDEGECPDILVHCCCEHLALCQEYRELKNRGFDLGIGWEANMDR 167
BLAST of rna-KK1_016041 vs. DB:Swiss
Match: CNR11_MAIZE (Cell number regulator 11 OS=Zea mays OX=4577 GN=CNR11 PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.821e-40 Identity = 75/143 (52.45%), Postives = 89/143 (62.24%), Query Frame = 1 Query: 1 MSAPKPKAQAQV--DWSTGLCDCFSNFGNCCLTLWCPCVTFGRIANVVDKGSTTCGGSGTLYTVVCCLLGCGWIYSCLYRSKMRREYMLKDSPCCDCLVHCCCEPCALCQEFRELENRGFDMAIGWHGNVEKGNGGVPKAPAV 423 M A P A + +WS GLCDCF + CCLTLWCPCVTFGR A +VD+GST C SGTLY ++ +G W+Y C RS MR +Y L++SPC DC VH C PCALCQE+ EL+ RGF MA KG P P V Sbjct: 26 MEALSPLADQSMPGEWSVGLCDCFGDLHTCCLTLWCPCVTFGRTAEIVDRGSTCCM-SGTLYYLLS-TIGWQWLYGCAKRSSMRSQYSLRESPCMDCCVHFWCGPCALCQEYTELQKRGFHMA--------KGISSPPHLPTV 158
BLAST of rna-KK1_016041 vs. DB:Swiss
Match: CNR7_MAIZE (Cell number regulator 7 OS=Zea mays OX=4577 GN=CNR7 PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 4.096e-40 Identity = 76/126 (60.32%), Postives = 92/126 (73.02%), Query Frame = 1 Query: 1 MSAPKPKAQAQVDWSTGLCDCFSNFGNCCLTLWCPCVTFGRIANVVDKGSTTCGGSGTLYTVVCCLLG--CGWIYSCLYRSKMRREYMLKDSPCCDCLVHCCCEPCALCQEFRELENRGFDMAIGW 372 +S+P P A A WS+GLC CF + G CC+T WCPCVTFGRIA VVD+G+T+C +G +YT++ C G C WIYSC YRSKMR + L D CCDC VH CCEPCALCQ++REL RG D A+GW Sbjct: 28 ISSPGP-AVAASQWSSGLCACFDDCGLCCMTCWCPCVTFGRIAEVVDRGATSCAAAGAIYTLLACFTGFQCHWIYSCTYRSKMRAQLGLPDVGCCDCCVHFCCEPCALCQQYRELRARGLDPALGW 152
BLAST of rna-KK1_016041 vs. DB:Swiss
Match: PCR6_ARATH (Protein PLANT CADMIUM RESISTANCE 6 OS=Arabidopsis thaliana OX=3702 GN=PCR6 PE=2 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 4.805e-40 Identity = 63/132 (47.73%), Postives = 90/132 (68.18%), Query Frame = 1 Query: 37 DWSTGLCDCFSNFGNCCLTLWCPCVTFGRIANVVDKGSTTCGGSGTLYTVVCCLLGCGWIYSCLYRSKMRREYMLKDSPCCDCLVHCCCEPCALCQEFRELENRGFDMAIGWHGNVEKGNGGVPKAPAVQPM 432 +W++GL DC ++ N +T P VTFG+IA V+D+G+T+CG +G LY ++CCL +Y+C +R+K+R +Y L D+P D + HC CE CALCQE+REL+NRG D +IGW GNV+K G + PM Sbjct: 87 NWTSGLFDCMNDGENALITCCFPFVTFGQIAEVIDEGATSCGTAGMLYGLICCLFAIPCVYTCTFRTKLRSKYGLPDAPAPDWITHCFCEYCALCQEYRELKNRGLDPSIGWIGNVQKQRMGQQQEMMAPPM 218 The following BLAST results are available for this feature:
BLAST of rna-KK1_016041 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_016041_Cc_Asha_v1.0 ID=rna-KK1_016041_Cc_Asha_v1.0; Name=rna-KK1_016041; organism=Cajanus cajan; type=mRNA; length=441bpback to top protein sequence of rna-KK1_016041_Cc_Asha_v1.0 >rna-KK1_016041_Cc_Asha_v1.0 ID=rna-KK1_016041_Cc_Asha_v1.0; Name=rna-KK1_016041_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=146bpback to top mRNA from alignment at Chr_8-CM003610.1:2464673..2465385- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_016041_Cc_Asha_v1.0 ID=rna-KK1_016041_Cc_Asha_v1.0; Name=rna-KK1_016041; organism=Cajanus cajan; type=mRNA; length=713bp; location=Sequence derived from: Chr_8-CM003610.1:2464673..2465385- (Cajanus cajanback to top Coding sequence (CDS) from alignment at Chr_8-CM003610.1:2464673..2465385- >rna-KK1_016041_Cc_Asha_v1.0 ID=rna-KK1_016041_Cc_Asha_v1.0; Name=rna-KK1_016041; organism=Cajanus cajan; type=CDS; length=882bp; location=Sequence derived from: Chr_8-CM003610.1:2464673..2465385- (Cajanus cajanback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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