rna-KK1_016080

Transcript Overview
Namerna-KK1_016080
Unique Namerna-KK1_016080_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length582
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_8-CM003610.1supercontigChr_8-CM003610.1:2803284..2803865 +Cajanus cajan Asha genome v1.0n/a
Chr_8-CM003610.1supercontigChr_8-CM003610.1:2803284..2803865 +Cajanus cajan Asha genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cccrR0091Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cccrR0107Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccpsR042Pisum sativum Cameor genome v1aPisum sativum
ccpsR055Pisum sativum Cameor genome v1aPisum sativum
ccpsR080Pisum sativum Cameor genome v1aPisum sativum
ccpsR084Pisum sativum Cameor genome v1aPisum sativum
ccccR037Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvR0068Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0086Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0116Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caiccL0008Cicer arietinum ICC 4958 genome v2Cicer arietinum
ccvuR0061Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0087Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caiccL0682Cicer arietinum ICC 4958 genome v2Cicer arietinum
caiccL0685Cicer arietinum ICC 4958 genome v2Cicer arietinum
caiccL0688Cicer arietinum ICC 4958 genome v2Cicer arietinum
caccL0387Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL0734Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL1062Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL1066Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccL0119Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0649Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0917Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1183Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1187Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1374Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asccL0395Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asccL0485Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asccL0534Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cctifR0069Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0082Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0103Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR0072Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0105Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0074Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvrvR0101Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvrvR0111Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvssR0066Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvssR0073Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvuaR0064Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvuaR0081Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvssR0099Vicia sativa cv. Studenica genome v1.0Vicia sativa
canccL0376Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL0740Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL1062Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL1065Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjccL0005Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL0338Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL0558Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carccL0405Cicer arietinum
carccL0789Cicer arietinum
carccL0798Cicer arietinum
carccL1140Cicer arietinum
ccccaR0072Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0096Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0113Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR0055Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0077Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0081Vigna umbellata FF25 genome v1.0Vigna umbellata

Orthologs
Gene/TranscriptAssemblySpecies
Ca_05484Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Psat1g038160.1Pisum sativum Cameor genome v1aPisum sativum
Vigun03g018000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Va02G070480.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_004512804.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_014657916.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Phvul.007G026700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_004497042.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
LR48_mrnaVigan10g020500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-TanjilR_04544Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Hedin2.R1.6g190480.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
LR48_mrnaVigan02g248000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vum_01G00194.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vfaba.Tiffany.R1.1g123200.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Phvul.004G158400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Va10G002710.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Tiffany.R1.6g146920.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-TanjilR_18686Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Va01G002190.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-TanjilR_22305Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Cr_14551.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigun04g021100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Ca_22734Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
jg40665.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
evm.model.Chr03.849Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Ca_15553.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Phvul.002G315700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-NM_001364798.1Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Cr_21369.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_00043.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-XM_014651897.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-TanjilR_32789Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vum_08G00245.1Vigna umbellata FF25 genome v1.0Vigna umbellata
jg27382.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Tiffany.R1.3g133920.1Vicia faba cv. Tiffany genome v1.0Vicia faba
LR48_mrnaVigan11g079800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
jg47113.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vum_11G01568.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-TanjilR_18318Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
evm.model.Chr04.169Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Ca_13002Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_014649832.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vfaba.Hedin2.R1.1g161880.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Cc_v2.0_17639.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Cc_v2.0_22960.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Cc_v2.0_05137.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_016080gene-KK1_016080_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_016080rna-KK1_016080_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_016080_Cc_Asha_v1.0rna-KK1_016080_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_016080_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:2803284..2803865rna-KK1_016080_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:2803284..2803865Cajanus cajanexon
rna-KK1_016080_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:2803284..2803865rna-KK1_016080_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:2803284..2803865Cajanus cajanexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_016080_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:2803284..2803865rna-KK1_016080_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:2803284..2803865Cajanus cajanCDS
rna-KK1_016080_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:2803284..2803865rna-KK1_016080_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:2803284..2803865Cajanus cajanCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-KK1_016080 vs.
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_016080_Cc_Asha_v1.0 ID=rna-KK1_016080_Cc_Asha_v1.0; Name=rna-KK1_016080; organism=Cajanus cajan; type=mRNA; length=582bp
ATGGAGACCCACACCGACACCACCAAACGACTTCGCCACCACTCTCACTC
CGACTTAGACTCGCCCGAGTCCTCCAAGCGCCTCCGAGTTCACCCCAACT
CATCCGAGTTCGACCAACTCGCCCGAGTCAACCCGGACCTTCTCGACATG
CTCAACGACGCCGACAATGTCACGGAGCGTGACCCCACCGTGCTTGACTC
TGTCATAAAGAGCTTCGAGGAGGAAATACTCGCTCCGCCTCCCAACCTGT
CACCCGAGCCCCAGCTTTTCAAGCCCAACCTAGGCTATTTATTGGAAGCC
TCCGACGACGAGCTAGGCTTGCCGCCCACGGTGGCGCCGCCCGCCGATGA
GGTTGCCGAGCCCCACCCTGTCGGTTCGGGTCGGGTCGGACCCGAGGGCG
TGGATCTGACGGGGTTTTTAGGGTTTGAGGATGATATTGGGAGCTACGAA
GGTTTGGGGTTTGTTGGGTACGATGATGTTGAAAATAACGGTGGCGGTTA
CGTGACGATAGATGGGTTGTTCGACTATGCGGATGTTGGCGCCGATATTT
TGTGGCGGTCGGAATCGTTACAGGCGATGTAG
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protein sequence of rna-KK1_016080_Cc_Asha_v1.0

>rna-KK1_016080_Cc_Asha_v1.0 ID=rna-KK1_016080_Cc_Asha_v1.0; Name=rna-KK1_016080_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=193bp
METHTDTTKRLRHHSHSDLDSPESSKRLRVHPNSSEFDQLARVNPDLLDM
LNDADNVTERDPTVLDSVIKSFEEEILAPPPNLSPEPQLFKPNLGYLLEA
SDDELGLPPTVAPPADEVAEPHPVGSGRVGPEGVDLTGFLGFEDDIGSYE
GLGFVGYDDVENNGGGYVTIDGLFDYADVGADILWRSESLQAM
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mRNA from alignment at Chr_8-CM003610.1:2803284..2803865+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_016080_Cc_Asha_v1.0 ID=rna-KK1_016080_Cc_Asha_v1.0; Name=rna-KK1_016080; organism=Cajanus cajan; type=mRNA; length=582bp; location=Sequence derived from: Chr_8-CM003610.1:2803284..2803865+ (Cajanus cajan
ATGGAGACCCACACCGACACCACCAAACGACTTCGCCACCACTCTCACTC
CGACTTAGACTCGCCCGAGTCCTCCAAGCGCCTCCGAGTTCACCCCAACT
CATCCGAGTTCGACCAACTCGCCCGAGTCAACCCGGACCTTCTCGACATG
CTCAACGACGCCGACAATGTCACGGAGCGTGACCCCACCGTGCTTGACTC
TGTCATAAAGAGCTTCGAGGAGGAAATACTCGCTCCGCCTCCCAACCTGT
CACCCGAGCCCCAGCTTTTCAAGCCCAACCTAGGCTATTTATTGGAAGCC
TCCGACGACGAGCTAGGCTTGCCGCCCACGGTGGCGCCGCCCGCCGATGA
GGTTGCCGAGCCCCACCCTGTCGGTTCGGGTCGGGTCGGACCCGAGGGCG
TGGATCTGACGGGGTTTTTAGGGTTTGAGGATGATATTGGGAGCTACGAA
GGTTTGGGGTTTGTTGGGTACGATGATGTTGAAAATAACGGTGGCGGTTA
CGTGACGATAGATGGGTTGTTCGACTATGCGGATGTTGGCGCCGATATTT
TGTGGCGGTCGGAATCGTTACAGGCGATGTAG
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Coding sequence (CDS) from alignment at Chr_8-CM003610.1:2803284..2803865+

>rna-KK1_016080_Cc_Asha_v1.0 ID=rna-KK1_016080_Cc_Asha_v1.0; Name=rna-KK1_016080; organism=Cajanus cajan; type=CDS; length=1164bp; location=Sequence derived from: Chr_8-CM003610.1:2803284..2803865+ (Cajanus cajan
ATGGAGACCCACACCGACACCACCAAACGACTTCGCCACCACTCTCACTC
CGACTTAGACTCGCCCGAGTCCTCCAAGCGCCTCCGAGTTCACCCCAACT
CATCCGAGTTCGACCAACTCGCCCGAGTCAACCCGGACCTTCTCGACATG
CTCAACGACGCCGACAATGTCACGGAGCGTGACCCCACCGTGCTTGACTC
TGTCATAAAGAGCTTCGAGGAGGAAATACTCGCTCCGCCTCCCAACCTGT
CACCCGAGCCCCAGCTTTTCAAGCCCAACCTAGGCTATTTATTGGAAGCC
TCCGACGACGAGCTAGGCTTGCCGCCCACGGTGGCGCCGCCCGCCGATGA
GGTTGCCGAGCCCCACCCTGTCGGTTCGGGTCGGGTCGGACCCGAGGGCG
TGGATCTGACGGGGTTTTTAGGGTTTGAGGATGATATTGGGAGCTACGAA
GGTTTGGGGTTTGTTGGGTACGATGATGTTGAAAATAACGGTGGCGGTTA
CGTGACGATAGATGGGTTGTTCGACTATGCGGATGTTGGCGCCGATATTT
TGTGGCGGTCGGAATCGTTACAGGCGATGTAGATGGAGACCCACACCGAC
ACCACCAAACGACTTCGCCACCACTCTCACTCCGACTTAGACTCGCCCGA
GTCCTCCAAGCGCCTCCGAGTTCACCCCAACTCATCCGAGTTCGACCAAC
TCGCCCGAGTCAACCCGGACCTTCTCGACATGCTCAACGACGCCGACAAT
GTCACGGAGCGTGACCCCACCGTGCTTGACTCTGTCATAAAGAGCTTCGA
GGAGGAAATACTCGCTCCGCCTCCCAACCTGTCACCCGAGCCCCAGCTTT
TCAAGCCCAACCTAGGCTATTTATTGGAAGCCTCCGACGACGAGCTAGGC
TTGCCGCCCACGGTGGCGCCGCCCGCCGATGAGGTTGCCGAGCCCCACCC
TGTCGGTTCGGGTCGGGTCGGACCCGAGGGCGTGGATCTGACGGGGTTTT
TAGGGTTTGAGGATGATATTGGGAGCTACGAAGGTTTGGGGTTTGTTGGG
TACGATGATGTTGAAAATAACGGTGGCGGTTACGTGACGATAGATGGGTT
GTTCGACTATGCGGATGTTGGCGCCGATATTTTGTGGCGGTCGGAATCGT
TACAGGCGATGTAG
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