rna-KK1_016107
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_016107 vs. DB:Swiss
Match: RHN1_NICPL (Ras-related protein RHN1 OS=Nicotiana plumbaginifolia OX=4092 GN=RHN1 PE=2 SV=1) HSP 1 Score: 276.174 bits (705), Expect = 3.594e-94 Identity = 134/200 (67.00%), Postives = 159/200 (79.50%), Query Frame = 1 Query: 1 MARTGNKSLQAKLVLLGDMGAGKTSLVLRFVKGQFSEYQESTIGAAFFTQVLSLNEATVKFDIWDTAGQERYHSLAPMYYRGAAAAIVVYDITSMDSFVRAKKWVREVQRQANASLTMFLVANKADLEADRKVSNEEGEEYAKEHGLSFLETSAKTAQNVNELFYEIAKRLAKANPLRQ-TGIKLHTRPRETRRGFFCCS 597 MA + + +L AKLVLLGDMGAGK+SLV+RFVKGQF E+QESTIGAAFF+ L++N ATVKF+IWDTAGQERYHSLAPMYYRGAAAAI+VYDITS DSF RAKKWV+E+Q+Q N ++ M L NKADLE RKV+ EE YA+E+GL F+ETSAKTA NVN +FYEIAKRL +A P + G+ L R E R CC+ Sbjct: 1 MASSSHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPRAQPAQNPAGMVLVDRAAEGTRATSCCT 200
BLAST of rna-KK1_016107 vs. DB:Swiss
Match: RAB5_TOBAC (Ras-related protein Rab5 OS=Nicotiana tabacum OX=4097 GN=RAB5 PE=2 SV=1) HSP 1 Score: 272.707 bits (696), Expect = 7.464e-93 Identity = 130/200 (65.00%), Postives = 159/200 (79.50%), Query Frame = 1 Query: 1 MARTGNKSLQAKLVLLGDMGAGKTSLVLRFVKGQFSEYQESTIGAAFFTQVLSLNEATVKFDIWDTAGQERYHSLAPMYYRGAAAAIVVYDITSMDSFVRAKKWVREVQRQANASLTMFLVANKADLEADRKVSNEEGEEYAKEHGLSFLETSAKTAQNVNELFYEIAKRLAKANPLRQT-GIKLHTRPRETRRGFFCCS 597 MA + +L AKLVLLGDMGAGK+SLV+RFVKGQF E+QESTIGAAFF+ +S+N ATVKF+IWDTAGQERYHSLAPMYYRGAAAAI+VYDITS +S RAKKWV+E+Q+Q N ++ M L NKADLE RKV+ EE YA+E+GL F+ETSAKTA NVN++FYEIAKRL +A P + G+ L +P + + CC+ Sbjct: 1 MASRRHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNKADLEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRLPRAQPAQNPAGMVLEDKPAQGSQAASCCT 200
BLAST of rna-KK1_016107 vs. DB:Swiss
Match: RAF2A_ARATH (Ras-related protein RABF2a OS=Arabidopsis thaliana OX=3702 GN=RABF2A PE=1 SV=1) HSP 1 Score: 268.47 bits (685), Expect = 3.446e-91 Identity = 131/200 (65.50%), Postives = 157/200 (78.50%), Query Frame = 1 Query: 1 MARTGNKSLQAKLVLLGDMGAGKTSLVLRFVKGQFSEYQESTIGAAFFTQVLSLNEATVKFDIWDTAGQERYHSLAPMYYRGAAAAIVVYDITSMDSFVRAKKWVREVQRQANASLTMFLVANKADLEADRKVSNEEGEEYAKEHGLSFLETSAKTAQNVNELFYEIAKRLAKANPLRQ-TGIKLHTRPRETRRGFFCCS 597 MA +GNK++ AKLVLLGD+GAGK+SLVLRFVK QF E+QESTIGAAFF+Q L++N+ATVKF+IWDTAGQERYHSLAPMYYRGAAAAI+V+DIT+ SF RAKKWV+E+Q Q N ++ M L NKADL RKVS EE E YA+E+ L F+ETSAKTA NV ++FYEIAKRL + P TG+ L P T CC+ Sbjct: 1 MASSGNKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPRVQPAENPTGMVLPNGPGATAVSSSCCA 200
BLAST of rna-KK1_016107 vs. DB:Swiss
Match: RAF2B_ARATH (Ras-related protein RABF2b OS=Arabidopsis thaliana OX=3702 GN=RABF2B PE=1 SV=1) HSP 1 Score: 264.233 bits (674), Expect = 1.680e-89 Identity = 127/200 (63.50%), Postives = 157/200 (78.50%), Query Frame = 1 Query: 1 MARTGNKSLQAKLVLLGDMGAGKTSLVLRFVKGQFSEYQESTIGAAFFTQVLSLNEATVKFDIWDTAGQERYHSLAPMYYRGAAAAIVVYDITSMDSFVRAKKWVREVQRQANASLTMFLVANKADLEADRKVSNEEGEEYAKEHGLSFLETSAKTAQNVNELFYEIAKRLAKANPLRQ-TGIKLHTRPRETRRGFFCCS 597 MA GNKS+ AKLVLLGD+GAGK+SLVLRFVK QF E+QESTIGAAFF+Q L++N+ATVKF+IWDTAGQERYHSLAPMYYRGAAAAI+V+D+T+ SF RAKKWV+E+Q Q N ++ M L NK+DL RKV+ E+ + YA+E+GL F+ETSAKTA NV E+FYEIA+RL + P TG+ L R + CC+ Sbjct: 1 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTENPTGMVLPDRAMDRAVSSSCCA 200
BLAST of rna-KK1_016107 vs. DB:Swiss
Match: RAB5A_ORYSJ (Ras-related protein Rab5A OS=Oryza sativa subsp. japonica OX=39947 GN=RAB5A PE=1 SV=1) HSP 1 Score: 256.914 bits (655), Expect = 1.524e-86 Identity = 129/201 (64.18%), Postives = 154/201 (76.62%), Query Frame = 1 Query: 4 ARTGNKSLQAKLVLLGDMGAGKTSLVLRFVKGQFSEYQESTIGAAFFTQVLSLNEATVKFDIWDTAGQERYHSLAPMYYRGAAAAIVVYDITSMDSFVRAKKWVREVQRQANASLTMFLVANKADLEADRKVSNEEGEEYAKEHGLSFLETSAKTAQNVNELFYEIAKRLAKANPLRQT--GIKLHTRPRETR-RGFFCCS 597 A GNK AKLVLLGD+G GK+SLVLRFVKGQF E+QESTIGAAFF+Q L++N+ TVKF+IWDTAGQERYHSLAPMYYRGAAAAIVVYDIT+ SF RAKKWV+E+Q Q N + M L NKAD+ R+V EE + YA+E+GL F+ETSAKTA NVN++F+EIAKRL + + T G+ L+ RP E CCS Sbjct: 3 ANPGNKIRNAKLVLLGDVGTGKSSLVLRFVKGQFVEFQESTIGAAFFSQTLAVNDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNAASFTRAKKWVQELQAQGNPNTIMALAGNKADMVEARQVPAEEAKTYAQENGLFFMETSAKTAINVNDVFHEIAKRLLQGQQAQDTPAGMVLNQRPAERMVSSSSCCS 203
BLAST of rna-KK1_016107 vs. DB:Swiss
Match: RAB5C_CANLF (Ras-related protein Rab-5C OS=Canis lupus familiaris OX=9615 GN=RAB5C PE=2 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 1.511e-81 Identity = 121/202 (59.90%), Postives = 145/202 (71.78%), Query Frame = 1 Query: 13 GNKSLQAKLVLLGDMGAGKTSLVLRFVKGQFSEYQESTIGAAFFTQVLSLNEATVKFDIWDTAGQERYHSLAPMYYRGAAAAIVVYDITSMDSFVRAKKWVREVQRQANASLTMFLVANKADLEADRKVSNEEGEEYAKEHGLSFLETSAKTAQNVNELFYEIAKRLAK-------ANPLRQTGIKLHTRPRETRRGFFCCS 597 GNK Q KLVLLG+ GK+SLVLRFVKGQF EYQESTIGAAF TQ + L++ TVKF+IWDTAGQERYHSLAPMYYRGA AAIVVYDIT+ D+F RAK WV+E+QRQA+ ++ + L NKADL + R V +E + YA ++ L F+ETSAKTA NVNE+F IAK+L K P R G+ L +R CCS Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPSRNRGVDLQENSPASRSQ--CCS 215
BLAST of rna-KK1_016107 vs. DB:Swiss
Match: RAB5C_MOUSE (Ras-related protein Rab-5C OS=Mus musculus OX=10090 GN=Rab5c PE=1 SV=2) HSP 1 Score: 243.817 bits (621), Expect = 2.640e-81 Identity = 117/183 (63.93%), Postives = 139/183 (75.96%), Query Frame = 1 Query: 13 GNKSLQAKLVLLGDMGAGKTSLVLRFVKGQFSEYQESTIGAAFFTQVLSLNEATVKFDIWDTAGQERYHSLAPMYYRGAAAAIVVYDITSMDSFVRAKKWVREVQRQANASLTMFLVANKADLEADRKVSNEEGEEYAKEHGLSFLETSAKTAQNVNELFYEIAKRLAKANPLRQTGIKLHTR 561 GNK Q KLVLLG+ GK+SLVLRFVKGQF EYQESTIGAAF TQ + L++ TVKF+IWDTAGQERYHSLAPMYYRGA AAIVVYDIT+ D+F RAK WV+E+QRQA+ ++ + L NKADL + R V +E + YA ++ L F+ETSAKTA NVNE+F IAK+L K P G TR Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRTR 198
BLAST of rna-KK1_016107 vs. DB:Swiss
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus OX=9913 GN=RAB5C PE=2 SV=1) HSP 1 Score: 243.817 bits (621), Expect = 2.850e-81 Identity = 121/202 (59.90%), Postives = 146/202 (72.28%), Query Frame = 1 Query: 13 GNKSLQAKLVLLGDMGAGKTSLVLRFVKGQFSEYQESTIGAAFFTQVLSLNEATVKFDIWDTAGQERYHSLAPMYYRGAAAAIVVYDITSMDSFVRAKKWVREVQRQANASLTMFLVANKADLEADRKVSNEEGEEYAKEHGLSFLETSAKTAQNVNELFYEIAKRLAKANPL-------RQTGIKLHTRPRETRRGFFCCS 597 GNK Q KLVLLG+ GK+SLVLRFVKGQF EYQESTIGAAF TQ + L++ TVKF+IWDTAGQERYHSLAPMYYRGA AAIVVYDIT+ D+F RAK WV+E+QRQA+ ++ + L NKADL + R V +E + YA+++ L F+ETSAKTA NVNE+F IAK+L K P R G+ L +R CCS Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRNRGVDLQENNPASRSQ--CCS 215
BLAST of rna-KK1_016107 vs. DB:Swiss
Match: RAB5C_PONAB (Ras-related protein Rab-5C OS=Pongo abelii OX=9601 GN=RAB5C PE=2 SV=1) HSP 1 Score: 243.817 bits (621), Expect = 2.945e-81 Identity = 117/183 (63.93%), Postives = 139/183 (75.96%), Query Frame = 1 Query: 13 GNKSLQAKLVLLGDMGAGKTSLVLRFVKGQFSEYQESTIGAAFFTQVLSLNEATVKFDIWDTAGQERYHSLAPMYYRGAAAAIVVYDITSMDSFVRAKKWVREVQRQANASLTMFLVANKADLEADRKVSNEEGEEYAKEHGLSFLETSAKTAQNVNELFYEIAKRLAKANPLRQTGIKLHTR 561 GNK Q KLVLLG+ GK+SLVLRFVKGQF EYQESTIGAAF TQ + L++ TVKF+IWDTAGQERYHSLAPMYYRGA AAIVVYDIT+ D+F RAK WV+E+QRQA+ ++ + L NKADL + R V +E + YA ++ L F+ETSAKTA NVNE+F IAK+L K P TG R Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNR 198
BLAST of rna-KK1_016107 vs. DB:Swiss
Match: RAB5C_HUMAN (Ras-related protein Rab-5C OS=Homo sapiens OX=9606 GN=RAB5C PE=1 SV=2) HSP 1 Score: 243.817 bits (621), Expect = 2.945e-81 Identity = 117/183 (63.93%), Postives = 139/183 (75.96%), Query Frame = 1 Query: 13 GNKSLQAKLVLLGDMGAGKTSLVLRFVKGQFSEYQESTIGAAFFTQVLSLNEATVKFDIWDTAGQERYHSLAPMYYRGAAAAIVVYDITSMDSFVRAKKWVREVQRQANASLTMFLVANKADLEADRKVSNEEGEEYAKEHGLSFLETSAKTAQNVNELFYEIAKRLAKANPLRQTGIKLHTR 561 GNK Q KLVLLG+ GK+SLVLRFVKGQF EYQESTIGAAF TQ + L++ TVKF+IWDTAGQERYHSLAPMYYRGA AAIVVYDIT+ D+F RAK WV+E+QRQA+ ++ + L NKADL + R V +E + YA ++ L F+ETSAKTA NVNE+F IAK+L K P TG R Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNR 198 The following BLAST results are available for this feature:
BLAST of rna-KK1_016107 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_016107_Cc_Asha_v1.0 ID=rna-KK1_016107_Cc_Asha_v1.0; Name=rna-KK1_016107; organism=Cajanus cajan; type=mRNA; length=600bpback to top protein sequence of rna-KK1_016107_Cc_Asha_v1.0 >rna-KK1_016107_Cc_Asha_v1.0 ID=rna-KK1_016107_Cc_Asha_v1.0; Name=rna-KK1_016107_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=199bpback to top mRNA from alignment at Chr_8-CM003610.1:3087704..3090389+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_016107_Cc_Asha_v1.0 ID=rna-KK1_016107_Cc_Asha_v1.0; Name=rna-KK1_016107; organism=Cajanus cajan; type=mRNA; length=2686bp; location=Sequence derived from: Chr_8-CM003610.1:3087704..3090389+ (Cajanus cajanback to top Coding sequence (CDS) from alignment at Chr_8-CM003610.1:3087704..3090389+ >rna-KK1_016107_Cc_Asha_v1.0 ID=rna-KK1_016107_Cc_Asha_v1.0; Name=rna-KK1_016107; organism=Cajanus cajan; type=CDS; length=1200bp; location=Sequence derived from: Chr_8-CM003610.1:3087704..3090389+ (Cajanus cajanback to top |