rna-KK1_018693

Transcript Overview
Namerna-KK1_018693
Unique Namerna-KK1_018693_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length660
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_7-CM003609.1supercontigChr_7-CM003609.1:9000043..9000702 +Cajanus cajan Asha genome v1.0n/a
Chr_7-CM003609.1supercontigChr_7-CM003609.1:9000043..9000702 +Cajanus cajan Asha genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cccrR1028Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
caiccL0340Cicer arietinum ICC 4958 genome v2Cicer arietinum
caiccL0344Cicer arietinum ICC 4958 genome v2Cicer arietinum
ccpvR1264Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccL0354Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL0365Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuR1258Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR1261Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anccL0175Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1303Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asccL0477Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asccL0757Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ccvrvR1052Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvuaR1137Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvssR1235Vicia sativa cv. Studenica genome v1.0Vicia sativa
canccL0348Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL0359Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjccL0835Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carccL0374Cicer arietinum
carccL0385Cicer arietinum
ccccaR1383Cajanus cajan cv. Asha genome v2.0Cajanus cajan

Orthologs
Gene/TranscriptAssemblySpecies
Ca_08116Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Ca_06860.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-TanjilR_13024Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_004493299.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Cc_v2.0_15369.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_018693gene-KK1_018693_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_018693rna-KK1_018693_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_018693_Cc_Asha_v1.0rna-KK1_018693_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_018693_Cc_Asha_v1.0-exon-Chr_7-CM003609.1_Cc_Asha_v1.0-1571082112:9000043..9000702rna-KK1_018693_Cc_Asha_v1.0-exon-Chr_7-CM003609.1_Cc_Asha_v1.0-1571082112:9000043..9000702Cajanus cajanexon
rna-KK1_018693_Cc_Asha_v1.0-exon-Chr_7-CM003609.1_Cc_Asha_v1.0-1571847872:9000043..9000702rna-KK1_018693_Cc_Asha_v1.0-exon-Chr_7-CM003609.1_Cc_Asha_v1.0-1571847872:9000043..9000702Cajanus cajanexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_018693_Cc_Asha_v1.0-CDS-Chr_7-CM003609.1_Cc_Asha_v1.0-1571082112:9000043..9000702rna-KK1_018693_Cc_Asha_v1.0-CDS-Chr_7-CM003609.1_Cc_Asha_v1.0-1571082112:9000043..9000702Cajanus cajanCDS
rna-KK1_018693_Cc_Asha_v1.0-CDS-Chr_7-CM003609.1_Cc_Asha_v1.0-1571847872:9000043..9000702rna-KK1_018693_Cc_Asha_v1.0-CDS-Chr_7-CM003609.1_Cc_Asha_v1.0-1571847872:9000043..9000702Cajanus cajanCDS


Homology
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BLAST of rna-KK1_018693 vs. DB:Swiss
Match: GIS2_ARATH (Zinc finger protein GIS2 OS=Arabidopsis thaliana OX=3702 GN=GIS2 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 5.293e-9
Identity = 37/93 (39.78%), Postives = 48/93 (51.61%), Query Frame = 1 
Query:    4 FPPLKQQKILLG-DSGSSNPVEPSKDHVKEENLPIS---------CKFCSKKFPTYQALGGHQNAHKNERFVLKMKNLENNAFRFGPNKNMHL 252
            F P ++   L G + G+S+    SKD+  E N  I          C +C + FPT QALGGHQNAHK ER   K  NL +NA  F   +  H+
Sbjct:   12 FSPKERPIRLFGFEFGASHEESESKDNYNENNESIKDDNKEKRFKCHYCFRNFPTSQALGGHQNAHKRERQQTKRFNLHSNAAAFFHRQQNHI 104
The following BLAST results are available for this feature:
BLAST of rna-KK1_018693 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
GIS2_ARATH5.293e-939.78Zinc finger protein GIS2 OS=Arabidopsis thaliana O... [more]
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InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13912zf-C2H2_6coord: 37..58
e-value: 1.2E-6
score: 28.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 189..219
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 37..57
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 35..62
score: 10.284
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 34..62

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_018693_Cc_Asha_v1.0 ID=rna-KK1_018693_Cc_Asha_v1.0; Name=rna-KK1_018693; organism=Cajanus cajan; type=mRNA; length=660bp
ATGTTCCCACCTTTGAAACAACAAAAAATACTCTTGGGGGATTCAGGTTC
TTCAAACCCTGTTGAGCCCTCAAAGGACCATGTGAAAGAAGAGAATCTAC
CAATCTCTTGCAAGTTTTGCAGTAAGAAGTTTCCCACGTATCAAGCCCTA
GGGGGACATCAAAATGCTCACAAGAATGAGCGGTTCGTTCTGAAAATGAA
AAATTTAGAGAATAACGCTTTTAGGTTTGGACCTAATAAAAATATGCACC
TCTATCCCTATTCTCTTTCAACCATGCCAAACATTCCTTTACAACTCCCA
CCATTATTTTATCATGGTGCACACATGCTCCCCAATCCCATGGTTCACAT
GCCTAACATGTATGGCACTCTTGCAACTCCTAGCTATGGCACTAACCAAG
GATTTTCCCATGCACCACGCAATTTCGGGATGACGAGTTCTTGGGGTGGA
GGGGCTGCAAGGTCTCCATGGAGATTGAACACACAAAGTGTAGGGCGATG
GCTGCAAAATCCTTCACTTGCTCAGGGTGCATTTAAAAGTTCCCTTGGTG
GTTCTTCTTCTCGGGTTGGTGCTGATTTTGGTGGTCTTCAAGGAAATCCA
ACTATGTCAACTAAAGATAATTCGCCTTCAGAAGATGCGGATTTGTCTCT
CAAACTTTGA
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protein sequence of rna-KK1_018693_Cc_Asha_v1.0

>rna-KK1_018693_Cc_Asha_v1.0 ID=rna-KK1_018693_Cc_Asha_v1.0; Name=rna-KK1_018693_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=219bp
MFPPLKQQKILLGDSGSSNPVEPSKDHVKEENLPISCKFCSKKFPTYQAL
GGHQNAHKNERFVLKMKNLENNAFRFGPNKNMHLYPYSLSTMPNIPLQLP
PLFYHGAHMLPNPMVHMPNMYGTLATPSYGTNQGFSHAPRNFGMTSSWGG
GAARSPWRLNTQSVGRWLQNPSLAQGAFKSSLGGSSSRVGADFGGLQGNP
TMSTKDNSPSEDADLSLKL
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mRNA from alignment at Chr_7-CM003609.1:9000043..9000702+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_018693_Cc_Asha_v1.0 ID=rna-KK1_018693_Cc_Asha_v1.0; Name=rna-KK1_018693; organism=Cajanus cajan; type=mRNA; length=660bp; location=Sequence derived from: Chr_7-CM003609.1:9000043..9000702+ (Cajanus cajan
ATGTTCCCACCTttgaaacaacaaaaaatactcTTGGGGGATTCAGGTTC
TTCAAACCCTGTTGAGCCCTCAAAGGACCATGTGAAAGAAGAGAATCTAC
CAATCTCTTGCAAGTTTTGCAGTAAGAAGTTTCCCACGTATCAAGCCCTA
GGGGGACATCAAAATGCTCACAAGAATGAGCGGTTCGttctgaaaatgaa
aaatttagagaataaCGCTTTTAGGTTTGGACCTAATAAAAATATGCACC
TCTATCCCTATTCTCTTTCAACCATGCCAAACATTCCTTTACAACTCCCA
CCATTATTTTATCATGGTGCACACATGCTCCCCAATCCCATGGTTCACAT
GCCTAACATGTATGGCACTCTTGCAACTCCTAGCTATGGCACTAACCAAG
GATTTTCCCATGCACCACGCAATTTCGGGATGACGAGTTCTTGGGGTGGA
GGGGCTGCAAGGTCTCCATGGAGATTGAACACACAAAGTGTAGGGCGATG
GCTGCAAAATCCTTCACTTGCTCAGGGTGCATTTAAAAGTTCCCTTGGTG
GTTCTTCTTCTCGGGTTGGTGCTGATTTTGGTGGTCTTCAAGGAAATCCA
ACTATGTCAACTAAAGATAATTCGCCTTCAGAAGATGCGGATTTGTCTCT
caaactttga
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Coding sequence (CDS) from alignment at Chr_7-CM003609.1:9000043..9000702+

>rna-KK1_018693_Cc_Asha_v1.0 ID=rna-KK1_018693_Cc_Asha_v1.0; Name=rna-KK1_018693; organism=Cajanus cajan; type=CDS; length=1320bp; location=Sequence derived from: Chr_7-CM003609.1:9000043..9000702+ (Cajanus cajan
ATGTTCCCACCTttgaaacaacaaaaaatactcTTGGGGGATTCAGGTTC
TTCAAACCCTGTTGAGCCCTCAAAGGACCATGTGAAAGAAGAGAATCTAC
CAATCTCTTGCAAGTTTTGCAGTAAGAAGTTTCCCACGTATCAAGCCCTA
GGGGGACATCAAAATGCTCACAAGAATGAGCGGTTCGttctgaaaatgaa
aaatttagagaataaCGCTTTTAGGTTTGGACCTAATAAAAATATGCACC
TCTATCCCTATTCTCTTTCAACCATGCCAAACATTCCTTTACAACTCCCA
CCATTATTTTATCATGGTGCACACATGCTCCCCAATCCCATGGTTCACAT
GCCTAACATGTATGGCACTCTTGCAACTCCTAGCTATGGCACTAACCAAG
GATTTTCCCATGCACCACGCAATTTCGGGATGACGAGTTCTTGGGGTGGA
GGGGCTGCAAGGTCTCCATGGAGATTGAACACACAAAGTGTAGGGCGATG
GCTGCAAAATCCTTCACTTGCTCAGGGTGCATTTAAAAGTTCCCTTGGTG
GTTCTTCTTCTCGGGTTGGTGCTGATTTTGGTGGTCTTCAAGGAAATCCA
ACTATGTCAACTAAAGATAATTCGCCTTCAGAAGATGCGGATTTGTCTCT
caaactttgaATGTTCCCACCTttgaaacaacaaaaaatactcTTGGGGG
ATTCAGGTTCTTCAAACCCTGTTGAGCCCTCAAAGGACCATGTGAAAGAA
GAGAATCTACCAATCTCTTGCAAGTTTTGCAGTAAGAAGTTTCCCACGTA
TCAAGCCCTAGGGGGACATCAAAATGCTCACAAGAATGAGCGGTTCGttc
tgaaaatgaaaaatttagagaataaCGCTTTTAGGTTTGGACCTAATAAA
AATATGCACCTCTATCCCTATTCTCTTTCAACCATGCCAAACATTCCTTT
ACAACTCCCACCATTATTTTATCATGGTGCACACATGCTCCCCAATCCCA
TGGTTCACATGCCTAACATGTATGGCACTCTTGCAACTCCTAGCTATGGC
ACTAACCAAGGATTTTCCCATGCACCACGCAATTTCGGGATGACGAGTTC
TTGGGGTGGAGGGGCTGCAAGGTCTCCATGGAGATTGAACACACAAAGTG
TAGGGCGATGGCTGCAAAATCCTTCACTTGCTCAGGGTGCATTTAAAAGT
TCCCTTGGTGGTTCTTCTTCTCGGGTTGGTGCTGATTTTGGTGGTCTTCA
AGGAAATCCAACTATGTCAACTAAAGATAATTCGCCTTCAGAAGATGCGG
ATTTGTCTCTcaaactttga
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding