rna-KK1_017221
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_017221 vs. DB:Swiss
Match: CYT5_ARATH (Cysteine proteinase inhibitor 5 OS=Arabidopsis thaliana OX=3702 GN=CYS5 PE=2 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 1.235e-28 Identity = 53/88 (60.23%), Postives = 67/88 (76.14%), Query Frame = 1 Query: 70 AVVGGWSPIKDLKEPHVAEIANYAVGEYDKRSGAXXXXXXXXXGETQVVAGTNYRLVLAAKDGSATA-NYEAVVYEKPWLRFRNLTSF 330 A VGGWSPI ++ +P V EI +AV EY+KRS + LK VV GETQVV+GTNYRL +AA DG + NY A+V++KPW++FRNLTSF Sbjct: 26 ARVGGWSPISNVTDPQVVEIGEFAVSEYNKRSESGLKFETVVSGETQVVSGTNYRLKVAANDGDGVSKNYLAIVWDKPWMKFRNLTSF 113
BLAST of rna-KK1_017221 vs. DB:Swiss
Match: CYT1_ACTDE (Cysteine proteinase inhibitor 1 OS=Actinidia deliciosa OX=3627 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.738e-27 Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 1 Query: 79 GGWSPIKDLKEPHVAEIANYAVGEYDKRSGAXXXXXXXXXGETQVVAGTNYRLVLAAKDGSATANYEAVVYEKPWLRFRNLTSF 330 GGW PI+ L V ++A +AV E++K++ +L+ VV+G TQVVAGTNYRLV+AAKDG+ NYEAVV++KPW+ FRNLTSF Sbjct: 30 GGWRPIESLNSAEVQDVAQFAVSEHNKQANDELQYQSVVRGYTQVVAGTNYRLVIAAKDGAVVGNYEAVVWDKPWMHFRNLTSF 113
BLAST of rna-KK1_017221 vs. DB:Swiss
Match: CYT8_ORYSJ (Cysteine proteinase inhibitor 8 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0429000 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.118e-20 Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 1 Query: 73 VVGGWSPIKDLKEPHVAEIANYAVGEYDKRSGAXXXXXXXXXGETQVVAGTNYRLVLAAKD-GSATANYEAVVYEKPWLRFRNLTSF 330 +VGGWSPI D+ +PH+ E+ +AV + S L+ +V GE QVV+G NYRLV++A D ATA+Y AVVYE+ W R LTSF Sbjct: 31 LVGGWSPITDVGDPHIQELGGWAVERHASLSSDGLRFRRVTSGEQQVVSGMNYRLVVSASDPAGATASYVAVVYEQSWTNTRQLTSF 117
BLAST of rna-KK1_017221 vs. DB:Swiss
Match: CYT4_ARATH (Cysteine proteinase inhibitor 4 OS=Arabidopsis thaliana OX=3702 GN=CYS4 PE=3 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 2.137e-16 Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 1 Query: 91 PIKDLKEPHVAEIANYAVGEYDKRSGAXXXXXXXXXGETQVVAGTNYRLVLAAKDGSA-TANYEAVVYEKPWLRFRNLTSF 330 PIK++ +P V +A YA+ E++K S KL VKVV+G TQVV+GT Y L +AAKDG NYEAVV EK WL ++L SF Sbjct: 34 PIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVEGTTQVVSGTKYDLKIAAKDGGGKIKNYEAVVVEKLWLHSKSLESF 114
BLAST of rna-KK1_017221 vs. DB:Swiss
Match: CYT6_ORYSJ (Cysteine proteinase inhibitor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0210200 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 2.738e-14 Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1 Query: 82 GWSPIKDLKEPHVAEIANYAVGEYDKRSGAXXXXXXXXX-GETQVVAGTNYRLVL--AAKDGSATANYEAVVYEKPWLRFRNLTSF 330 GWSPIK++ +PH+ E+ +A+ E ++ S + V GE QVV+G NYRL + A+ G T +Y AVV+E+ W R L SF Sbjct: 22 GWSPIKNIDDPHIQELGRWAITENNRVSPSDELTFHRVTGGEQQVVSGMNYRLEIEAASGGGDVTGSYGAVVFEQEWSNTRKLISF 107
BLAST of rna-KK1_017221 vs. DB:Swiss
Match: CYT1_ORYSJ (Cysteine proteinase inhibitor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0803200 PE=1 SV=2) HSP 1 Score: 65.855 bits (159), Expect = 1.462e-13 Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = 1 Query: 73 VVGGWSPIKDLKEPHVAEIANYAVGEYDKRSGAXXXXXXXXXGETQVVAGTNYRLVLAAKDGSATANYEAVVYEKPWLRFRNLTSF 330 V+GG P+ + + H+ ++A +AV E++K++ + L+ K+V + QVVAGT Y + K+G A YEA V+EKPW+ F+ L F Sbjct: 46 VLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLYEAKVWEKPWMDFKELQEF 131
BLAST of rna-KK1_017221 vs. DB:Swiss
Match: CYT7_ORYSJ (Putative cysteine proteinase inhibitor 7 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0210100 PE=3 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 6.434e-13 Identity = 42/88 (47.73%), Postives = 52/88 (59.09%), Query Frame = 1 Query: 76 VGGWSPIKDLKEPHVAEIANYAVGEYDKRSGAX-XXXXXXXXGETQVVAGTNYRLVL-AAKDGSATANYEAVVYEK-PWLRFRNLTSF 330 VG W P+ D+ +PHV E+ +AV E D+ A L +V GE QVVAG NYRL L A+ G+ YEAVVYE+ P R L SF Sbjct: 27 VGSWEPV-DINDPHVQELGRWAVAEEDRGVAAGGLTFERVTDGEKQVVAGVNYRLTLEASSSGAKDGRYEAVVYEQDPRSNARKLVSF 113
BLAST of rna-KK1_017221 vs. DB:Swiss
Match: CYTI_VIGUN (Cysteine proteinase inhibitor OS=Vigna unguiculata OX=3917 PE=1 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 2.248e-12 Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 1 Query: 115 HVAEIANYAVGEYDKRSGAXXXXXXXXXGETQVVAGTNYRLVLAAKDGSATANYEAVVYEKPWLRFRNLTSFVVVG 342 + +A +AV E++K+ A L+ +VV + QVV+GT Y + L AKDG YEA V+EKPWL F+ L F VG Sbjct: 18 EIDSLARFAVEEHNKKQNALLEFGRVVSAQQQVVSGTLYTITLEAKDGGQKKVYEAKVWEKPWLNFKELQEFKHVG 93
BLAST of rna-KK1_017221 vs. DB:Swiss
Match: CYT3_ARATH (Cysteine proteinase inhibitor 3 OS=Arabidopsis thaliana OX=3702 GN=CYS3 PE=2 SV=2) HSP 1 Score: 60.8474 bits (146), Expect = 6.824e-12 Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 1 Query: 118 VAEIANYAVGEYDKRSGAXXXXXXXXXGETQVVAGTNYRLVLAAKDGSATANYEAVVYEKPWLRFRNLTSF 330 + +A +A+ E++K+ L+ K+VK QVVAGT Y L L AK+G T N+EA V+ KPW+ F+ L F Sbjct: 50 IESLARFAIQEHNKQQNKILEFKKIVKAREQVVAGTMYHLTLEAKEGDQTKNFEAKVWVKPWMNFKQLQEF 120
BLAST of rna-KK1_017221 vs. DB:Swiss
Match: CYT1_MAIZE (Cystatin-1 OS=Zea mays OX=4577 GN=RAMDAZC7 PE=2 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 8.452e-12 Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 1 Query: 94 IKDL----KEPHVAEIANYAVGEYDKRSGAXXXXXXXXXGETQVVAGTNYRLVLAAKDGSATANYEAVVYEKPWLRFRNLTSF 330 IKD+ + + E+A +AV E+++++ A L K+VK +TQVVAGT Y L + KDG YEA V+EKPW F+ L F Sbjct: 44 IKDVPANENDLQLQELARFAVNEHNQKANALLGFEKLVKAKTQVVAGTMYYLTIEVKDGEVKKLYEAKVWEKPWENFKQLQEF 126 The following BLAST results are available for this feature:
BLAST of rna-KK1_017221 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_017221_Cc_Asha_v1.0 ID=rna-KK1_017221_Cc_Asha_v1.0; Name=rna-KK1_017221; organism=Cajanus cajan; type=mRNA; length=354bpback to top protein sequence of rna-KK1_017221_Cc_Asha_v1.0 >rna-KK1_017221_Cc_Asha_v1.0 ID=rna-KK1_017221_Cc_Asha_v1.0; Name=rna-KK1_017221_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=117bpback to top mRNA from alignment at Chr_8-CM003610.1:15205013..15205621- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_017221_Cc_Asha_v1.0 ID=rna-KK1_017221_Cc_Asha_v1.0; Name=rna-KK1_017221; organism=Cajanus cajan; type=mRNA; length=609bp; location=Sequence derived from: Chr_8-CM003610.1:15205013..15205621- (Cajanus cajanback to top Coding sequence (CDS) from alignment at Chr_8-CM003610.1:15205013..15205621- >rna-KK1_017221_Cc_Asha_v1.0 ID=rna-KK1_017221_Cc_Asha_v1.0; Name=rna-KK1_017221; organism=Cajanus cajan; type=CDS; length=708bp; location=Sequence derived from: Chr_8-CM003610.1:15205013..15205621- (Cajanus cajanback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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