rna-KK1_032180
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_032180 vs. DB:Swiss
Match: XAF1_HUMAN (XIAP-associated factor 1 OS=Homo sapiens OX=9606 GN=XAF1 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.073e-14 Identity = 37/111 (33.33%), Postives = 56/111 (50.45%), Query Frame = 1
Query: 4 VPKLRAEEHYLNTHAPVSCSLCSETMERDILDIHRGENCIRRMVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCNKYVRLRERYNHEDSCNRIQDNSAGSSRYVRPAERD 336
VPK EEH H V C++C ++M++ L+ H+ C R V C+FC+ + L H+ CG+RTELC C +++ R H D C R + G + ER+
Sbjct: 41 VPKETMEEHCKLEHQQVGCTMCQQSMQKSSLEFHKANECQERPVECKFCKLDMQLSKLELHESYCGSRTELCQGCGQFIMHRMLAQHRDVC-RSEQAQLGKGERISAPERE 150
BLAST of rna-KK1_032180 vs. DB:Swiss
Match: XAF1_BOVIN (XIAP-associated factor 1 OS=Bos taurus OX=9913 GN=XAF1 PE=2 SV=2) HSP 1 Score: 64.6994 bits (156), Expect = 1.149e-11 Identity = 35/91 (38.46%), Postives = 49/91 (53.85%), Query Frame = 1
Query: 22 EEHYLNTHAPVSCSLCSETMERDILDIHRGENCIRRMVTCEFCEFP--LPAIDLAEHQEVCGNRTELCHLCNKYVRLRERYNHEDSCNRIQ 288
EEH H V C++C +++ + LD H + C R V C+FC+ L +DL EH CG +TELC C ++V LR H + C R Q
Sbjct: 47 EEHCQGGHQQVGCAMCQQSVPKHSLDSHEAQECQERPVECQFCQLAVRLNKVDLHEHH--CGQQTELCPDCGQHVMLRVLARHREECQREQ 135
BLAST of rna-KK1_032180 vs. DB:Swiss
Match: TRAD1_MOUSE (TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus OX=10090 GN=Trafd1 PE=1 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 1.251e-10 Identity = 31/96 (32.29%), Postives = 50/96 (52.08%), Query Frame = 1
Query: 4 VPKLRAEEHYLNTHAPVSCSLCSETMERDILDIHRGENCIRRMVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCNKYVRLRERYNHEDSCNRIQD 291
PK + H H V+C C++ +E+ L H C R+ C+ C+ L + L EH++ CG RTELC C + V ++E H + C R+++
Sbjct: 46 FPKSDMDIHMAAEHCQVTCK-CNKKLEKRQLKQHAETECPLRLAVCQHCDLELSVVKLKEHEDYCGARTELCGSCGRNVLVKELKTHPEVCGRVEE 140
BLAST of rna-KK1_032180 vs. DB:Swiss
Match: TRAD1_RAT (TRAF-type zinc finger domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Trafd1 PE=1 SV=2) HSP 1 Score: 61.2326 bits (147), Expect = 2.744e-10 Identity = 31/95 (32.63%), Postives = 49/95 (51.58%), Query Frame = 1
Query: 7 PKLRAEEHYLNTHAPVSCSLCSETMERDILDIHRGENCIRRMVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCNKYVRLRERYNHEDSCNRIQD 291
PK + H H V+C C++ +E+ L H C R+ C+ C+ L + L EH++ CG RTELC C + V ++E H C R+++
Sbjct: 47 PKSDMDIHVATEHCQVTCK-CNKKLEKRQLKQHVETECPLRLAVCQHCDLELSVVKLKEHEDYCGARTELCGSCGRNVLVKELQTHPAVCGRVEE 140
BLAST of rna-KK1_032180 vs. DB:Swiss
Match: TRAD1_BOVIN (TRAF-type zinc finger domain-containing protein 1 OS=Bos taurus OX=9913 GN=TRAFD1 PE=2 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 1.180e-9 Identity = 30/93 (32.26%), Postives = 47/93 (50.54%), Query Frame = 1
Query: 4 VPKLRAEEHYLNTHAPVSCSLCSETMERDILDIHRGENCIRRMVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCNKYVRLRERYNHEDSCNR 282
PK E H H V+C C++ +E+ L H C R+ C+ C+ L + L +H++ CG RTELC C + V +++ H + C R
Sbjct: 46 FPKCDMETHMATEHCQVTCK-CNKKLEKRQLKKHEETECPLRLALCQHCDLELSVLKLKDHEDYCGARTELCGTCGRNVLVKDLKTHPEVCGR 137
BLAST of rna-KK1_032180 vs. DB:Swiss
Match: TRAD1_MACFA (TRAF-type zinc finger domain-containing protein 1 OS=Macaca fascicularis OX=9541 GN=TRAFD1 PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 1.187e-7 Identity = 31/93 (33.33%), Postives = 48/93 (51.61%), Query Frame = 1
Query: 4 VPKLRAEEHYLNTHAPVSCSLCSETMERDILDIHRGENCIRRMVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCNKYVRLRERYNHEDSCNR 282
PK E H H V+C C++ +E+ +L H C R+ C+ C+ L + L EH++ CG RTELC C + V +++ H + C R
Sbjct: 46 FPKSDMETHMAAEHCQVTCK-CNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDLKTHPEVCGR 137
BLAST of rna-KK1_032180 vs. DB:Swiss
Match: TRAD1_HUMAN (TRAF-type zinc finger domain-containing protein 1 OS=Homo sapiens OX=9606 GN=TRAFD1 PE=1 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 1.245e-7 Identity = 31/93 (33.33%), Postives = 48/93 (51.61%), Query Frame = 1
Query: 4 VPKLRAEEHYLNTHAPVSCSLCSETMERDILDIHRGENCIRRMVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCNKYVRLRERYNHEDSCNR 282
PK E H H V+C C++ +E+ +L H C R+ C+ C+ L + L EH++ CG RTELC C + V +++ H + C R
Sbjct: 46 FPKSDMETHMAAEHCQVTCK-CNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDLKTHPEVCGR 137 The following BLAST results are available for this feature:
BLAST of rna-KK1_032180 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 7
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_032180_Cc_Asha_v1.0 ID=rna-KK1_032180_Cc_Asha_v1.0; Name=rna-KK1_032180; organism=Cajanus cajan; type=mRNA; length=489bpback to top protein sequence of rna-KK1_032180_Cc_Asha_v1.0 >rna-KK1_032180_Cc_Asha_v1.0 ID=rna-KK1_032180_Cc_Asha_v1.0; Name=rna-KK1_032180_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=162bpback to top mRNA from alignment at Scaffold000248-KQ483564.1:211173..213567- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_032180_Cc_Asha_v1.0 ID=rna-KK1_032180_Cc_Asha_v1.0; Name=rna-KK1_032180; organism=Cajanus cajan; type=mRNA; length=2395bp; location=Sequence derived from: Scaffold000248-KQ483564.1:211173..213567- (Cajanus cajanback to top Coding sequence (CDS) from alignment at Scaffold000248-KQ483564.1:211173..213567- >rna-KK1_032180_Cc_Asha_v1.0 ID=rna-KK1_032180_Cc_Asha_v1.0; Name=rna-KK1_032180; organism=Cajanus cajan; type=CDS; length=978bp; location=Sequence derived from: Scaffold000248-KQ483564.1:211173..213567- (Cajanus cajanback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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