rna-KK1_024702

Transcript Overview
Namerna-KK1_024702
Unique Namerna-KK1_024702_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length420
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cccrR0301Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cccrR0302Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccpsR266Pisum sativum Cameor genome v1aPisum sativum
ccpsR267Pisum sativum Cameor genome v1aPisum sativum
ccccR107Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvR0405Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0406Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuR0405Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0406Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0407Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cctifR0327Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0329Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR0333Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0334Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0335Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvuaR0356Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvuaR0357Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvuaR0358Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvssR0371Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvssR0373Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccccaR0434Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0435Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0437Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR0401Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0402Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0403Vigna umbellata FF25 genome v1.0Vigna umbellata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_024702gene-KK1_024702_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_024702rna-KK1_024702_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_024702_Cc_Asha_v1.0rna-KK1_024702_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_024702_Cc_Asha_v1.0-exon-Scaffold000330-KQ483414.1_Cc_Asha_v1.0-1571082112:426105..426524rna-KK1_024702_Cc_Asha_v1.0-exon-Scaffold000330-KQ483414.1_Cc_Asha_v1.0-1571082112:426105..426524Cajanus cajanexon
rna-KK1_024702_Cc_Asha_v1.0-exon-Scaffold000330-KQ483414.1_Cc_Asha_v1.0-1571847872:426105..426524rna-KK1_024702_Cc_Asha_v1.0-exon-Scaffold000330-KQ483414.1_Cc_Asha_v1.0-1571847872:426105..426524Cajanus cajanexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_024702_Cc_Asha_v1.0-CDS-Scaffold000330-KQ483414.1_Cc_Asha_v1.0-1571082112:426105..426524rna-KK1_024702_Cc_Asha_v1.0-CDS-Scaffold000330-KQ483414.1_Cc_Asha_v1.0-1571082112:426105..426524Cajanus cajanCDS
rna-KK1_024702_Cc_Asha_v1.0-CDS-Scaffold000330-KQ483414.1_Cc_Asha_v1.0-1571847872:426105..426524rna-KK1_024702_Cc_Asha_v1.0-CDS-Scaffold000330-KQ483414.1_Cc_Asha_v1.0-1571847872:426105..426524Cajanus cajanCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-KK1_024702 vs.
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_024702_Cc_Asha_v1.0 ID=rna-KK1_024702_Cc_Asha_v1.0; Name=rna-KK1_024702; organism=Cajanus cajan; type=mRNA; length=420bp
ATGGAAATTTTATCTTTTGATATGAAGAATGAGAAATGCACATATATGTC
AATGCCTAGTCATGTTGATACTAAGCCTAATCTTAAGGTTCTAAAGGATT
ATTTGTGTCTTTATTATGATCACATGAAAACCCATTTTGTTGTTTGGCTA
ATGAGGGAATATGGAGTTGATAAATCTTGGACTCAATTGCTGAATATAAT
TTATGAGCATCTTCAAATTCATAAACCTGTTGATGCAAAAGAATTGTGCA
TGCCCTTGTGCATGTCTGAAGATGAAGATGTCCTGTTGCTGAAAAACTGG
GAATTTTACTTTTACATTGTCTATAATAAGAGAGATAATAGAGTAAACCA
TTTTGATGAAGATCATTTATCGTCCTTCCTTGAGTACGTTTCATGTTTGT
TTTTTCCATATTGGAATTAA
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protein sequence of rna-KK1_024702_Cc_Asha_v1.0

>rna-KK1_024702_Cc_Asha_v1.0 ID=rna-KK1_024702_Cc_Asha_v1.0; Name=rna-KK1_024702_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=139bp
MEILSFDMKNEKCTYMSMPSHVDTKPNLKVLKDYLCLYYDHMKTHFVVWL
MREYGVDKSWTQLLNIIYEHLQIHKPVDAKELCMPLCMSEDEDVLLLKNW
EFYFYIVYNKRDNRVNHFDEDHLSSFLEYVSCLFFPYWN
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mRNA from alignment at Scaffold000330-KQ483414.1:426105..426524+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_024702_Cc_Asha_v1.0 ID=rna-KK1_024702_Cc_Asha_v1.0; Name=rna-KK1_024702; organism=Cajanus cajan; type=mRNA; length=420bp; location=Sequence derived from: Scaffold000330-KQ483414.1:426105..426524+ (Cajanus cajan
ATggaaattttatcttttgatatGAAGAATGAGAAATGCACATATATGTC
AATGCCTAGTCATGTTGATACTAAGCCTAATCTTAAGGTTCTAAAGGATT
ATTTGTGTCTTTATTATGATCACATGAAAACCCATTTTGTTGTTTGGCTA
ATGAGGGAATATGGAGTTGATAAATCTTGGACTCAATTGCTGAATATAAT
TTATGAGCATCTTCAAATTCATAAACCTGTTGATGCAAAAGAATTGTGCA
TGCCCTTGTGCATGTCTGAAGATGAAGATGTCCTGTTGCTGAAAAACTGG
GAATTTTACTTTTACATTGTCTATAATAAGAGAGATAATAGAGTAAACCA
TTTTGATGAAGATCATTTATCGTCCTTCCTTGAGTACGTTTCATGTTTGT
TTTTTCCATATTGGAATTAA
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Coding sequence (CDS) from alignment at Scaffold000330-KQ483414.1:426105..426524+

>rna-KK1_024702_Cc_Asha_v1.0 ID=rna-KK1_024702_Cc_Asha_v1.0; Name=rna-KK1_024702; organism=Cajanus cajan; type=CDS; length=840bp; location=Sequence derived from: Scaffold000330-KQ483414.1:426105..426524+ (Cajanus cajan
ATggaaattttatcttttgatatGAAGAATGAGAAATGCACATATATGTC
AATGCCTAGTCATGTTGATACTAAGCCTAATCTTAAGGTTCTAAAGGATT
ATTTGTGTCTTTATTATGATCACATGAAAACCCATTTTGTTGTTTGGCTA
ATGAGGGAATATGGAGTTGATAAATCTTGGACTCAATTGCTGAATATAAT
TTATGAGCATCTTCAAATTCATAAACCTGTTGATGCAAAAGAATTGTGCA
TGCCCTTGTGCATGTCTGAAGATGAAGATGTCCTGTTGCTGAAAAACTGG
GAATTTTACTTTTACATTGTCTATAATAAGAGAGATAATAGAGTAAACCA
TTTTGATGAAGATCATTTATCGTCCTTCCTTGAGTACGTTTCATGTTTGT
TTTTTCCATATTGGAATTAAATggaaattttatcttttgatatGAAGAAT
GAGAAATGCACATATATGTCAATGCCTAGTCATGTTGATACTAAGCCTAA
TCTTAAGGTTCTAAAGGATTATTTGTGTCTTTATTATGATCACATGAAAA
CCCATTTTGTTGTTTGGCTAATGAGGGAATATGGAGTTGATAAATCTTGG
ACTCAATTGCTGAATATAATTTATGAGCATCTTCAAATTCATAAACCTGT
TGATGCAAAAGAATTGTGCATGCCCTTGTGCATGTCTGAAGATGAAGATG
TCCTGTTGCTGAAAAACTGGGAATTTTACTTTTACATTGTCTATAATAAG
AGAGATAATAGAGTAAACCATTTTGATGAAGATCATTTATCGTCCTTCCT
TGAGTACGTTTCATGTTTGTTTTTTCCATATTGGAATTAA
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