rna-KK1_024732
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_024732 vs. DB:Swiss
Match: GLK1_ARATH (Transcription activator GLK1 OS=Arabidopsis thaliana OX=3702 GN=GLK1 PE=1 SV=2) HSP 1 Score: 268.085 bits (684), Expect = 1.738e-84 Identity = 215/470 (45.74%), Postives = 264/470 (56.17%), Query Frame = 1
Query: 1 MLALSPLRSTRDESQGAME------SFSI----GTDDFADLSEGNLLESINFDDLFMGINDEEDALPDLEMDPEMLA-EFSLSEESEIASSPLSVSVPNKNKSDSNTNGKNIVTTKKQEEDNKAANXXXXXXXXQEIVSKSD----ESVVVDPSPKESEKGRKLSTHQSR-----NNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAARWSQRKQLAGVGIGG--GKREVNPWL--APTMGF---------PPMTPMHHFRPLHVWGHHTMDQSFM-HIWPKHLSYXXXXXXXXXXXXXXXXXXXXLYWHQHQRAPNAPTPGTPCFPQPLTTTRFGSQTVPGI----PPHHAMYQIVDXXXXXXXXXXXXXXLFDFHPSKESIDAAISDVXXXXXXXXXXXXXXXXXDGVMGELQRQGIPKIPP--SCA 1290
MLALSP +TRD GA E F+I ++F D ++ L I D G+ D LPDLE+DPE+L+ +FS ++ N + +TT + D++ + SG +E+VSK D E+V D +S++ RK S+ S +N +GKRKVKVDWTPELHRRFV+AVEQLGVDKAVPSRILE+MG+ CLTRHN+ASHLQKYRSHRKHLLAREAEAA W++++ + GV G R N WL APT+GF PP HHFRPLHVWGH T+DQS M H+WPKHL P P D YWH N TP P TRF + V GI PPHH MY+ P D HPSKES+DAAI DVL++PWLPLPLGL PA+DGVM EL R G+ ++PP SCA
Sbjct: 1 MLALSP--ATRDGCDGASEFLDTSCGFTIINPEEEEEFPDFADHGDLLDIIDFDDIFGV--AGDVLPDLEIDPEILSGDFS-----------------------NHMNASSTITTTSDKTDSQGETTKGSSGKGEEVVSKRDDVAAETVTYD---GDSDRKRKYSSSASSKNNRISNNEGKRKVKVDWTPELHRRFVEAVEQLGVDKAVPSRILELMGVHCLTRHNVASHLQKYRSHRKHLLAREAEAANWTRKRHIYGVDTGANLNGRTKNGWLAPAPTLGFPPPPPVAVAPPPVHHHHFRPLHVWGHPTVDQSIMPHVWPKHLP-----PPSTAMPNPPFWVSDSPYWHPMH---NGTTPYLPTV-----ATRFRAPPVAGIPHALPPHHTMYK-------PNLGFGGARPPVDLHPSKESVDAAIGDVLTRPWLPLPLGLNPPAVDGVMTELHRHGVSEVPPTASCA 420
BLAST of rna-KK1_024732 vs. DB:Swiss
Match: GLK1_ORYSJ (Probable transcription factor GLK1 OS=Oryza sativa subsp. japonica OX=39947 GN=GLK1 PE=2 SV=1) HSP 1 Score: 235.728 bits (600), Expect = 1.473e-71 Identity = 206/470 (43.83%), Postives = 258/470 (54.89%), Query Frame = 1
Query: 1 MLALSPLRSTRDESQGA------MESFSIGTDDFADLSEGNLLESINFDDLFMGINDEEDALPDLEMDP-EMLAEF-----SLSEESEIASSP-LSVSVPNKNKSDSNTNGKNIVTTKK--------------QEEDNKAANXXXXXXXXQEIVSKSDESVVVDPSPKESEKGRKLSTHQSRNNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAARWSQRKQLAGVGIGG-GKR-EVNPWLAPTMGF-------PPMTPMHHF-RPLHVWGHHTMDQSFMHIW-PKHLSYXXXXXXXXXXXXXXXXXXXXLYWHQ-HQRAP-NAPTPGTPCFPQPLTTTRFGSQTVPGIPPHHAMYQIVDXXXXXXXXXXXXXXLFDFHPSKESIDAAISDVXXXXXXXXXXXXXXXXXDGVMGELQRQGIPKIPPSCA 1290
MLA+SP E + A ME + +DD ++ I+F D F+ + D D LPDLE+DP E+ +F S E + P + + P + + G +V + Q++D AN + + + +KS S +E+E K S+ S K+K KVDWTPELHRRFVQAVEQLG+DKAVPSRILEIMGID LTRHNIASHLQKYRSHRKH++AREAEAA W+QR+Q+ G G KR E N W PT+GF P P+ HF RPLHVWGH TMD S + +W P+HL P P P PPP DP +WH + R P + PT GTPC P+ RF + V MY+ + P Q PS ESIDAAI DVLSKPWLPLPLGLK P++D VMGELQRQG+ +PP+C
Sbjct: 1 MLAVSPAMCPDIEDRAAVAGDAGMEVVGMSSDDMDQFDFS--VDDIDFGDFFLRLEDG-DVLPDLEVDPAEIFTDFEAIATSGGEGVQDQEVPTVELLAPADDVGVLDPCGDVVVGEENAAFAGAGEEKGGCNQDDDAGEANVDDGAAAVE---AKSSSPSSTTSSSQEAESRHKSSSKSSHG----KKKAKVDWTPELHRRFVQAVEQLGIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSHRKHMIAREAEAASWTQRRQIYAAGGGAVAKRPESNAWTVPTIGFPPPPPPPPSPAPIQHFARPLHVWGHPTMDPSRVPVWPPRHL----VPRGPAPPWVPPPPPSDPAFWHHPYMRGPAHVPTQGTPCMAMPMPAARFPAPPV-PGVVPCPMYRPLTPPALASKNQQDAQLQLQVQPSSESIDAAIGDVLSKPWLPLPLGLKPPSVDSVMGELQRQGVANVPPACG 455
BLAST of rna-KK1_024732 vs. DB:Swiss
Match: GLK2_ARATH (Transcription activator GLK2 OS=Arabidopsis thaliana OX=3702 GN=GLK2 PE=1 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 1.419e-65 Identity = 182/448 (40.62%), Postives = 232/448 (51.79%), Query Frame = 1
Query: 1 MLALSP----LRSTRDESQGAMESFSIGTDDFADLS-----EGNLLESINF-DDLFMGINDEEDALPDLEMDPEMLAEFSLS---EESEIASSPLSVSVPNKNKSDSNTNGKNIVTTKKQEEDNKAANXXXXXXXXQEIVSKSDESVVVDPSPKESEKGRKLSTHQSRNNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAARWSQRKQLAGVGIGGGKREVNPWLAPTMGFPP-MTPMH--HFRPLHVWGHHTMDQSFMHIWPKH-----LSYXXXXXXXXXXXXXXXXXXXXLYWHQHQRAPNAPTPGTPCFPQPLTTTRFGSQTVPGIPPHHAMYQIVDXXXXXXXXXXXXXXLFDFHPSKESIDAAISDVXXXXXXXXXXXXXXXXXDGVMGELQRQGIPKIPP 1281
ML +SP + + ++ A + T+D D + +LL+ I++ DDLF+G D +D LPDLE+D E+L E+S S EE E+ + + S T+ +++ K++ + + K + + D + K+K KVDWTPELHR+FVQAVEQLGVDKAVPSRILEIM + LTRHN+ASHLQKYRSHRKHLLAREAEAA W+ R+ G G PW AP +G+PP + PMH HFRPLHVWGH T WPKH S P AP+ P P YWHQ P +PQ ++ G+P P P D HPS ESIDAAI DV+SKPWLPLPLGLK P++DGVM ELQRQG+ +PP
Sbjct: 1 MLTVSPAPVLIGNNSKDTYMAADFADFTTEDLPDFTTVGDFSDDLLDGIDYYDDLFIGF-DGDDVLPDLEIDSEILGEYSGSGRDEEQEMEGN---------TSTASETSERDVGVCKQEGGGGGDGGFRDKTVRRGKRKGKKSKDCLSDEN-------------------DIKKKPKVDWTPELHRKFVQAVEQLGVDKAVPSRILEIMNVKSLTRHNVASHLQKYRSHRKHLLAREAEAASWNLRRHATVAVPGVGGGGKKPWTAPALGYPPHVAPMHHGHFRPLHVWGHPT--------WPKHKPNTPASAHRTYPMPAIAAAPASWPGHPPYWHQQ-----------PLYPQGYGMASSNHSSI-GVP---------------TRQLGPTNPPIDIHPSNESIDAAIGDVISKPWLPLPLGLKPPSVDGVMTELQRQGVSNVPP 384
BLAST of rna-KK1_024732 vs. DB:Swiss
Match: GLK2_ORYSJ (Probable transcription factor GLK2 OS=Oryza sativa subsp. japonica OX=39947 GN=GLK2 PE=2 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 2.104e-55 Identity = 160/329 (48.63%), Postives = 182/329 (55.32%), Query Frame = 1
Query: 466 NNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAARWSQRKQLAGV---------------GIGGGKREVNPWLAPTMGF-----------PPMTPMHHFRPLHVWGHHTMD-----------------QSFMHIWPKHLSYXXXXXXXX-XXXXXXXXXXXXLYWHQHQRA-----PNAPTPGTPCFPQPLTTT----RFGSQTVPGIPPHHAMYQIVDXXXXXXXXXXXXXXL-FDFHPSKESIDAAISDVXXXXXXXXXXXXXXXXXDGVMGELQRQGIPKIPPSCA 1290
N GKRKVKVDWTPELHRRFVQAVEQLG+DKAVPSRILE+MGI+CLTRHNIASHLQKYRSHRKHL+AREAEAA W+Q++Q+ V PW+ PT+GF PP P PLHVWGH T + +WP+HL+ PPPP P YW Q A P A TPGTPC P PL RF V H MY+ + P + L D HPSKESIDAAI DVL KPWLPLPLGLK P+LD VM EL +QGIPK+PP+ +
Sbjct: 208 KNSHGKRKVKVDWTPELHRRFVQAVEQLGIDKAVPSRILELMGIECLTRHNIASHLQKYRSHRKHLMAREAEAASWTQKRQMYTAAAAAAAVAAGGGPRKDAAAATAAVAPWVMPTIGFPPPHAAAMVPPPPHPPPFCRPPLHVWGHPTAGVEPTTAAAPPPPSPHAQPPLLPVWPRHLAPPPPPLPAAWAHGHQPAPVDPAAYWQQQYNAARKWGPQAVTPGTPCMPPPLPPAAMLQRFPVPPV-PGMVPHPMYRPIPPPSPPQGNKLAALQLQLDAHPSKESIDAAIGDVLVKPWLPLPLGLKPPSLDSVMSELHKQGIPKVPPAAS 535
BLAST of rna-KK1_024732 vs. DB:Swiss
Match: APRR2_ARATH (Two-component response regulator-like APRR2 OS=Arabidopsis thaliana OX=3702 GN=APRR2 PE=2 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 2.475e-26 Identity = 73/202 (36.14%), Postives = 114/202 (56.44%), Query Frame = 1
Query: 130 DLFMGINDEEDALPDLEMDPEMLAEFSLSEESEIASSPLSVSVPNKNKSDSNTNG--KNIVTTKKQEEDNKAANXXXXXXXXQE-------IVSKSDESVVVDPSPKESEKGRKLSTHQSRNNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAARWSQRKQ 708
D+ + D + P L+ D +L + E + ++ S N D G K++ TT ++ +D+K S +E ++S+ +SV + E++ K S ++ + + RK KVDWTPELH++FVQAVEQLGVD+A+PSRILE+M + LTRHN+ASHLQK+R HRK++L ++ RW Q ++
Sbjct: 170 DMTIEEKDPAPSTPQLKQDSRLL-DGDCQENINFSMENVNSSTEKDNMEDHQDIGESKSVDTTNRKLDDDKVVVKEERGDSEKEEEGETGDLISEKTDSVDIHKKEDETKPINKSSGIKNVSGNKTSRK-KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVGTLTRHNVASHLQKFRQHRKNILPKDDHNHRWIQSRE 369
BLAST of rna-KK1_024732 vs. DB:Swiss
Match: ORR22_ORYSJ (Two-component response regulator ORR22 OS=Oryza sativa subsp. japonica OX=39947 GN=RR22 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 4.054e-19 Identity = 50/118 (42.37%), Postives = 69/118 (58.47%), Query Frame = 1
Query: 454 HQSRNNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAE-----AARWSQRKQLAGVGIGGGKREVNPWLAPTMGFPPMTP 792
+Q + P +K +V W+ ELHR+FV AV QLG+DKAVP RILE+M ++ LTR N+ASHLQKYR + K L A ++ AA + +G G + P+ AP+ P P
Sbjct: 206 YQENDEPSAAKKPRVVWSVELHRKFVAAVNQLGIDKAVPKRILELMNVEKLTRENVASHLQKYRLYLKRLGAVASQQASIVAAFGGRDPSFLHIGAFEGLQSYQPF-APSAALPSFNP 322
BLAST of rna-KK1_024732 vs. DB:Swiss
Match: ORR22_ORYSI (Two-component response regulator ORR22 OS=Oryza sativa subsp. indica OX=39946 GN=RR22 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 4.091e-19 Identity = 50/118 (42.37%), Postives = 69/118 (58.47%), Query Frame = 1
Query: 454 HQSRNNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAE-----AARWSQRKQLAGVGIGGGKREVNPWLAPTMGFPPMTP 792
+Q + P +K +V W+ ELHR+FV AV QLG+DKAVP RILE+M ++ LTR N+ASHLQKYR + K L A ++ AA + +G G + P+ AP+ P P
Sbjct: 206 YQENDEPSAAKKPRVVWSVELHRKFVAAVNQLGIDKAVPKRILELMNVEKLTRENVASHLQKYRLYLKRLGAVASQQASIVAAFGGRDPSFLHIGAFEGLQSYQPF-APSAALPSFNP 322
BLAST of rna-KK1_024732 vs. DB:Swiss
Match: ORR23_ORYSI (Two-component response regulator ORR23 OS=Oryza sativa subsp. indica OX=39946 GN=RR23 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.348e-17 Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 1
Query: 457 QSRNNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLA 669
Q ++P +K +V W+ ELHR+FV AV QLG+DKAVP RILE+M ++ LTR N+ASHLQKYR + K L A
Sbjct: 204 QDIDDPSAPKKPRVVWSVELHRKFVAAVNQLGIDKAVPKRILELMNVEKLTRENVASHLQKYRLYLKRLSA 274
BLAST of rna-KK1_024732 vs. DB:Swiss
Match: ORR23_ORYSJ (Two-component response regulator ORR23 OS=Oryza sativa subsp. japonica OX=39947 GN=RR23 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.423e-17 Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 1
Query: 457 QSRNNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLA 669
Q ++P +K +V W+ ELHR+FV AV QLG+DKAVP RILE+M ++ LTR N+ASHLQKYR + K L A
Sbjct: 204 QDIDDPSAPKKPRVVWSVELHRKFVAAVNQLGIDKAVPKRILELMNVEKLTRENVASHLQKYRLYLKRLSA 274
BLAST of rna-KK1_024732 vs. DB:Swiss
Match: ORR25_ORYSJ (Two-component response regulator ORR25 OS=Oryza sativa subsp. japonica OX=39947 GN=RR25 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.358e-15 Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query: 484 RKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHL 663
++ +V WTPELHR FV AV +LGVD+AVP +IL +M +D +TR NIASHLQKYR + K +
Sbjct: 185 KRQRVVWTPELHRDFVIAVHELGVDRAVPRKILRMMKVDYMTRENIASHLQKYRLYLKRI 244 The following BLAST results are available for this feature:
BLAST of rna-KK1_024732 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_024732_Cc_Asha_v1.0 ID=rna-KK1_024732_Cc_Asha_v1.0; Name=rna-KK1_024732; organism=Cajanus cajan; type=mRNA; length=1293bpback to top protein sequence of rna-KK1_024732_Cc_Asha_v1.0 >rna-KK1_024732_Cc_Asha_v1.0 ID=rna-KK1_024732_Cc_Asha_v1.0; Name=rna-KK1_024732_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=430bpback to top mRNA from alignment at Scaffold000330-KQ483414.1:677453..681203+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_024732_Cc_Asha_v1.0 ID=rna-KK1_024732_Cc_Asha_v1.0; Name=rna-KK1_024732; organism=Cajanus cajan; type=mRNA; length=3751bp; location=Sequence derived from: Scaffold000330-KQ483414.1:677453..681203+ (Cajanus cajanback to top Coding sequence (CDS) from alignment at Scaffold000330-KQ483414.1:677453..681203+ >rna-KK1_024732_Cc_Asha_v1.0 ID=rna-KK1_024732_Cc_Asha_v1.0; Name=rna-KK1_024732; organism=Cajanus cajan; type=CDS; length=2586bp; location=Sequence derived from: Scaffold000330-KQ483414.1:677453..681203+ (Cajanus cajanback to top |