rna-KK1_036683
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_036683 vs. DB:Swiss
Match: CP29B_ARATH (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1) HSP 1 Score: 259.61 bits (662), Expect = 4.005e-85 Identity = 162/256 (63.28%), Postives = 190/256 (74.22%), Query Frame = 1 Query: 88 LSLAPNSKPISISAVFLKPTTLSLSSRFVPRVAVSSELEQEEDTXXXXXXXXXXXXXXXXLKLFVGNLPFSVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRALRVNAXXXXXXXXX-------XXXXXXXXXXXXXXXXXXXXXNRVHVGNLAWGVDNLALESLFREQGKVLEARVIYDRESGRSRGFGFVTYSSPDEVNSAIQSLDGVDLNGRAIRVSMADSKPKR 834
L +S SI+A + P +SRF VA++SE E EED F+D + + LKLFVGNLPF+VDSAQLA+LFESAGNVE+VEVIYDK TGRSRGFGFVTMSSV EVEAAAQQFNGYEL+GR LRVNAGPPP + E S SG GGGG + S NRV+VGNL+WGVD++ALESLF EQGKV+EARVIYDR+SGRS+GFGFVTY S EV +AI+SLDG DL+GR IRVS A+++P R
Sbjct: 37 FKLNSDSVSFSIAAKWNSP-----ASRFARNVAITSEFEVEEDGFADVAPPKEQSFSAD-LKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPR 286
BLAST of rna-KK1_036683 vs. DB:Swiss
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1) HSP 1 Score: 255.758 bits (652), Expect = 7.147e-84 Identity = 153/223 (68.61%), Postives = 178/223 (79.82%), Query Frame = 1 Query: 166 RFVPRVAVSSELEQEEDTXXXXXXXXXXXXXXXXLKLFVGNLPFSVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRALRVNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVHVGNLAWGVDNLALESLFREQGKVLEARVIYDRESGRSRGFGFVTYSSPDEVNSAIQSLDGVDLNGRAIRVSMADSKPKR 834
RFV +V +S + +Q ED DG + +FSPDLK+FVGNLPFS DSA LAELFE AGNVE+VEVIYDK TGRSRGFGFVTMSS EEVEAA QQFNGYEL+GRALRVN+GPPP + E+S GS G NRV+VGNLAWGVD ALE+LF EQGKV++A+V+YDR+SGRSRGFGFVTYSS +EVN+AI+SLDGVDLNGRAIRVS A+++P R
Sbjct: 54 RFVRKVTLS-DFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSS-----NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPR 270
BLAST of rna-KK1_036683 vs. DB:Swiss
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1) HSP 1 Score: 247.669 bits (631), Expect = 1.220e-80 Identity = 142/190 (74.74%), Postives = 161/190 (84.74%), Query Frame = 1 Query: 268 LKLFVGNLPFSVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRALRVNAXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXNRVHVGNLAWGVDNLALESLFREQGKVLEARVIYDRESGRSRGFGFVTYSSPDEVNSAIQSLDGVDLNGRAIRVSMADSKPKR 834
LK+FVGNL FS DSA LAELFE AGNVE+VEVIYDK TGRSRGFGFVTMSS EEVEAA QQFNGYEL+GRALRVN+GPPP + E+S R S GGG DS NRV+VGNLAWGVD ALE+LF EQGKV++A+V+YDR+SGRSRGFGFVTYSS +EVN+AI+SLDGVDLNGRAIRVS A+++P R
Sbjct: 87 LKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPR 276
BLAST of rna-KK1_036683 vs. DB:Swiss
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 1.067e-76 Identity = 146/247 (59.11%), Postives = 173/247 (70.04%), Query Frame = 1 Query: 136 LKPTTLSLSSRFVPRVAVSSELEQEEDTXXXXXXXXXXXXXXXXLKLFVGNLPFSVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRALRVNAXXXXXXXXXXX--------------XXXXXXXXXXXXXXXXXXXNRVHVGNLAWGVDNLALESLFREQGKVLEARVIYDRESGRSRGFGFVTYSSPDEVNSAIQSLDGVDLNGRAIRVSMADSKPKR 834
+KP S F RVA+S + E+D LKLFVGNLPFSVDSA LA LFE AGNVE+VEVIYDK TGRSRGFGFVTMS+ EEVEAA QQFNGYE++GRA+RVNAGP P++ E+S R SS GG DS NRV+VGNL+WGVD+LAL+ LF EQG V++A+V+YDR+SGRSRGFGFVTYSS EVN AI SL+GVDL+GR+IRVS A+ +P+R
Sbjct: 52 IKP----FESSFSTRVALSGFDQLEDDVEVAEQPRFSED-----LKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERPRR 289
BLAST of rna-KK1_036683 vs. DB:Swiss
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 1.445e-76 Identity = 146/247 (59.11%), Postives = 176/247 (71.26%), Query Frame = 1 Query: 136 LKPTTLSLSSRFVPRVAVSSELEQEEDTXXXXXXXXXXXXXXXXLKLFVGNLPFSVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRALRVNAXXXXXXXXXXX--------------XXXXXXXXXXXXXXXXXXXNRVHVGNLAWGVDNLALESLFREQGKVLEARVIYDRESGRSRGFGFVTYSSPDEVNSAIQSLDGVDLNGRAIRVSMADSKPKR 834
+KP S F RVA+S + +Q ED + S LKLFVGNLPFSVDSA LA LFE AGNVE+VEVIYDK +GRSRGFGFVTMS+ EEVEAA QQFNGYE++GRA+RVNAGP P++ E+S R SS GG DS NRV+VGNL+WGVD+LAL+ LF EQG V++A+V+YDR+SGRSRGFGFVTYSS EVN AI SL+G+DL+GR+IRVS A+ +P+R
Sbjct: 53 IKP----FESSFSTRVALS-DFDQLEDDVEVAEQPRFSED----LKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERPRR 290
BLAST of rna-KK1_036683 vs. DB:Swiss
Match: CP31A_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A PE=1 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 2.043e-58 Identity = 103/188 (54.79%), Postives = 124/188 (65.96%), Query Frame = 1 Query: 271 KLFVGNLPFSVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRALRVNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVHVGNLAWGVDNLALESLFREQGKVLEARVIYDRESGRSRGFGFVTYSSPDEVNSAIQSLDGVDLNGRAIRVSMADSKPKR 834
KLFVGNL + V+S LA LFE AG VE+ EVIY++ T +SRGFGFVTMSSV+E E A ++FN Y+L GR L VN P RV+VGNL W VDN LE LF E GKV+EARV+YDRE+GRSRGFGFVT S DE+N AI +LDG +L GRAIRV++A+ +P R
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAF------------RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326
BLAST of rna-KK1_036683 vs. DB:Swiss
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 3.403e-58 Identity = 103/188 (54.79%), Postives = 129/188 (68.62%), Query Frame = 1 Query: 271 KLFVGNLPFSVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRALRVNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVHVGNLAWGVDNLALESLFREQGKVLEARVIYDRESGRSRGFGFVTYSSPDEVNSAIQSLDGVDLNGRAIRVSMADSKPKR 834
KLFVGNLP+ VDS +LA +F++AG VE+ EVIY++ T RSRGFGFVTMS+VEE E A + NGY+++GR L VN P E +PR RV+VGNL W VD LE LF E GKV+ ARV+ DRE+GRSRGFGFVT SS EVN AI +LDG L+GRA+RV++A+ +P+R
Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSC------------RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRR 231
BLAST of rna-KK1_036683 vs. DB:Swiss
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 1.638e-55 Identity = 95/188 (50.53%), Postives = 123/188 (65.43%), Query Frame = 1 Query: 271 KLFVGNLPFSVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRALRVNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVHVGNLAWGVDNLALESLFREQGKVLEARVIYDRESGRSRGFGFVTYSSPDEVNSAIQSLDGVDLNGRAIRVSMADSKPKR 834
KLFVGNLP+ VDS LA LFE AG VE+ EVIY++ T +SRGFGFVTMS+VEE E A + +N Y++ GR L VN P R++VGN+ WG+D+ LE LF E GKV+ ARV+YDRE+GRSRGFGFVT +S E++ AI +LDG L+GR IRV++A+ + +R
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSY------------RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRR 312
BLAST of rna-KK1_036683 vs. DB:Swiss
Match: CP31B_ARATH (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31B PE=1 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 3.480e-55 Identity = 97/188 (51.60%), Postives = 125/188 (66.49%), Query Frame = 1 Query: 271 KLFVGNLPFSVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRALRVNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVHVGNLAWGVDNLALESLFREQGKVLEARVIYDRESGRSRGFGFVTYSSPDEVNSAIQSLDGVDLNGRAIRVSMADSKPKR 834
KLFVGNLP+ VDS LA LFE AG VE+ EVIY++ T +SRGFGFVTMS+VEE E A ++FN +E+ GR L VN P + R++VGNL W VD+ LE LF E GKV++ARV+ DRE+GRSRGFGFV S+ +EVN AI +LDG +L GRAI+V++A+ + +R
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAF------------RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
BLAST of rna-KK1_036683 vs. DB:Swiss
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 1.186e-54 Identity = 93/188 (49.47%), Postives = 123/188 (65.43%), Query Frame = 1 Query: 271 KLFVGNLPFSVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRALRVNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVHVGNLAWGVDNLALESLFREQGKVLEARVIYDRESGRSRGFGFVTYSSPDEVNSAIQSLDGVDLNGRAIRVSMADSKPKR 834
KLFVGNLP+ +DS LA+LF+ AG VE+ EVIY++ T RSRGFGFVTMS+VEE + A + ++ Y+L GR L VN P R++VGN+ W +D+ LE +F E GKV+ ARV++DRESGRSRGFGFVT SS E++ AI +LDG L+GR IRV+ A+ +P+R
Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTY------------RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRR 273 The following BLAST results are available for this feature:
BLAST of rna-KK1_036683 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_036683_Cc_Asha_v1.0 ID=rna-KK1_036683_Cc_Asha_v1.0; Name=rna-KK1_036683; organism=Cajanus cajan; type=mRNA; length=840bpback to top protein sequence of rna-KK1_036683_Cc_Asha_v1.0 >rna-KK1_036683_Cc_Asha_v1.0 ID=rna-KK1_036683_Cc_Asha_v1.0; Name=rna-KK1_036683_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=279bpback to top mRNA from alignment at Scaffold128880-KQ483745.1:17107..19137+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_036683_Cc_Asha_v1.0 ID=rna-KK1_036683_Cc_Asha_v1.0; Name=rna-KK1_036683; organism=Cajanus cajan; type=mRNA; length=2031bp; location=Sequence derived from: Scaffold128880-KQ483745.1:17107..19137+ (Cajanus cajanback to top Coding sequence (CDS) from alignment at Scaffold128880-KQ483745.1:17107..19137+ >rna-KK1_036683_Cc_Asha_v1.0 ID=rna-KK1_036683_Cc_Asha_v1.0; Name=rna-KK1_036683; organism=Cajanus cajan; type=CDS; length=1680bp; location=Sequence derived from: Scaffold128880-KQ483745.1:17107..19137+ (Cajanus cajanback to top |