rna-KK1_036684

Transcript Overview


Name	rna-KK1_036684
Unique Name	rna-KK1_036684_Cc_Asha_v1.0
Type	mRNA
Organism	Cajanus cajan (pigeon pea)
Sequence length	1239
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Scaffold128880-KQ483745.1	supercontig	Scaffold128880-KQ483745.1:47195..50406 +	Cajanus cajan Asha genome v1.0	n/a
Scaffold128880-KQ483745.1	supercontig	Scaffold128880-KQ483745.1:47195..50406 +	Cajanus cajan Asha genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cajanus cajan Asha genome v1.0	2019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot	2019-10-17

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cccrR0641	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
ccpvR0833	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
ccpvR0834	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
ccvuR0819	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
ccvuR0820	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
caccL0313	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
asccL0613	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
cctifR0674	Vicia faba cv. Tiffany genome v1.0	Vicia faba
ccvfhR0692	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
ccvrvR0709	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
ccvrvR0710	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
ccvuaR0745	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
ccvuaR0746	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
ccvssR0775	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
canccL0310	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
avjccL0648	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjccL0772	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
carccL0330		Cicer arietinum
ccccaR0890	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccccaR0891	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccvumR0844	Vigna umbellata FF25 genome v1.0	Vigna umbellata
ccvumR0845	Vigna umbellata FF25 genome v1.0	Vigna umbellata

Orthologs


Gene/Transcript	Assembly	Species
Vigun01g163100.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Phvul.007G150800.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Phvul.001G180200.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
rna-XM_014655587.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
rna-XM_004494019.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
evm.model.Chr07.2279.1.6211317b	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Vum_08G01993.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
Vum_04G02406.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
Ca_00710	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
evm.model.Chr01.1561	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Vfaba.Hedin2.R1.5g140840.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
LR48_mrnaVigan02g097300	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
rna-XM_014639315.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Cr_01416.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
Va03G073490.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
jg32056.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Vfaba.Tiffany.R1.5g113880.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Va02G035240.2	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Vigun07g076300.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Cc_v2.0_02917.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
Cc_v2.0_07792.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-KK1_036684	gene-KK1_036684_Cc_Asha_v1.0	Cajanus cajan	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-KK1_036684	rna-KK1_036684_Cc_Asha_v1.0-protein	Cajanus cajan	polypeptide
rna-KK1_036684_Cc_Asha_v1.0	rna-KK1_036684_Cc_Asha_v1.0	Cajanus cajan	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:47195..47348	rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:47195..47348	Cajanus cajan	exon
rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:47195..47348	rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:47195..47348	Cajanus cajan	exon
rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:47451..47669	rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:47451..47669	Cajanus cajan	exon
rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:47451..47669	rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:47451..47669	Cajanus cajan	exon
rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:48292..48397	rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:48292..48397	Cajanus cajan	exon
rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:48292..48397	rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:48292..48397	Cajanus cajan	exon
rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:48872..49208	rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:48872..49208	Cajanus cajan	exon
rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:48872..49208	rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:48872..49208	Cajanus cajan	exon
rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:49500..49784	rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:49500..49784	Cajanus cajan	exon
rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:49500..49784	rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:49500..49784	Cajanus cajan	exon
rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:50269..50406	rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:50269..50406	Cajanus cajan	exon
rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:50269..50406	rna-KK1_036684_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:50269..50406	Cajanus cajan	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:47195..47348	rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:47195..47348	Cajanus cajan	CDS
rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:47195..47348	rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:47195..47348	Cajanus cajan	CDS
rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:47451..47669	rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:47451..47669	Cajanus cajan	CDS
rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:47451..47669	rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:47451..47669	Cajanus cajan	CDS
rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:48292..48397	rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:48292..48397	Cajanus cajan	CDS
rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:48292..48397	rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:48292..48397	Cajanus cajan	CDS
rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:48872..49208	rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:48872..49208	Cajanus cajan	CDS
rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:48872..49208	rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:48872..49208	Cajanus cajan	CDS
rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:49500..49784	rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:49500..49784	Cajanus cajan	CDS
rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:49500..49784	rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:49500..49784	Cajanus cajan	CDS
rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:50269..50406	rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:50269..50406	Cajanus cajan	CDS
rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:50269..50406	rna-KK1_036684_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:50269..50406	Cajanus cajan	CDS

Homology

[Close]

BLAST of rna-KK1_036684 vs. DB:Swiss
Match: ACR10_ARATH (ACT domain-containing protein ACR10 OS=Arabidopsis thaliana OX=3702 GN=ACR10 PE=2 SV=1)

HSP 1 Score: 543.888 bits (1400), Expect = 0.000e+0
Identity = 281/415 (67.71%), Postives = 334/415 (80.48%), Query Frame = 1

Query:    1 MGILYDDVVIIREPEKDGDPTVITVNCPDKTGLGCDLCRIILFFGLNIVRGDVSTDGKWCYIVFWVVGKQRTRWGLLKKRLIEACPSCSSASGISY-YRSDL--QPCNPPDVFLLNFSCHDRKGLLHDVTEVLCELELTIKKVKVSTTPDGKVMDLFFITDTRELLHTKKRKDETIEQLTEILGDAIISIDIELVGPEITACSQASPFLPTAITEDVFNLELPDLARSGTLRSDYVSIAMDNLLSPAHTLVQIMCQDHKGLLFDIMRTLKDYNIKISYGRFTTKPRGKCEIDLFIMQADGKKIVDPNKQNXXXXXXXXXXXXXXXVAIVSRGPDTELLVANPVELSGKGRPLVFHDITLSLKMLGTCIFSAEIGRHLIGDREWEVYKILLGEGEGLSVPRNKIEEGVWKMLMGWE 1236
            MGIL DDVVII + EK+GDP+VIT+NCPDKTGLGCDLCRI+LFFGLNIVRGDVSTDGKWCY+VFWV+GK  TRW LLK RL+EA PS S A GIS  Y SD   QP   PD+FLL  +C DR GLL+DVTEVL +LE+ I+KVK+STTPDGKVMDLFF+TDTRELL T KR++E  E L + +GD++IS DIELVGPEITACS +S     ++ E +F+ ++     SG   S  VSIA+DN LS AHTL+ I CQDHKGLL+DIMRT KD+NI+ISYGRFT K    CEIDLFI+Q+DG+KI+D +K N+L +RLR EL +PLRV +++RGPDTELLV NPVELSGKGRP VFHDI L+LK + TCIFSAEIGRH+ GDREWEVYK+L+ E + L +PR+KIEE VWK LMGWE
Sbjct:    1 MGILSDDVVIISQSEKEGDPSVITINCPDKTGLGCDLCRILLFFGLNIVRGDVSTDGKWCYLVFWVIGKPNTRWNLLKMRLVEASPSFSWAFGISRCYLSDSESQPPKLPDLFLLKLACSDRTGLLYDVTEVLYKLEINIEKVKISTTPDGKVMDLFFVTDTRELLGTVKRRNEVYEYLRDAIGDSMISYDIELVGPEITACSTSS-----SVAETLFSSDVSGEHSSGLHTSSNVSIAVDNSLSSAHTLIHITCQDHKGLLYDIMRTFKDFNIQISYGRFTIKLGKNCEIDLFIVQSDGRKILDSSKLNALITRLRAELQQPLRVVMMNRGPDTELLVTNPVELSGKGRPQVFHDIALALKKIDTCIFSAEIGRHVTGDREWEVYKVLINEEDSLPIPRSKIEEEVWKTLMGWE 410

[Close]

BLAST of rna-KK1_036684 vs. DB:Swiss
Match: ACR9_ARATH (ACT domain-containing protein ACR9 OS=Arabidopsis thaliana OX=3702 GN=ACR9 PE=2 SV=1)

HSP 1 Score: 421.009 bits (1081), Expect = 1.148e-144
Identity = 224/418 (53.59%), Postives = 293/418 (70.10%), Query Frame = 1

Query:    1 MGILYDDVVIIREPEKDGDPTVITVNCPDKTGLGCDLCRIILFFGLNIVRGDVSTDGKWCYIVFWV---VGKQRTRWGLLKKRLIEACPSCSSASGISYYRSDLQPCNPPDVFLLNFSCHDRKGLLHDVTEVLCELELTIKKVKVSTTPDGKVMDLFFITDTRELLHTKKRKDETIEQLTEILGDAIISIDIELVGPEITACSQASPFLPTAITEDVFNLELPDLARSGTLRSDYVSIAMDNLLSPAHTLVQIMCQDHKGLLFDIMRTLKDYNIKISYGRFTTKPRGKCEIDLFIMQADGKKIVDPNKQNXXXXXXXXXXXXXXXVAIVSRGPDTELLVANPVELSGKGRPLVFHDITLSLKMLGTCIFSAEIGRHLIGDREWEVYKILLGEGEGLSV----PRNKIEEGVWKMLMGW 1233
            MGIL DD V+I   +  GDPTV+TVNCPD++GLG  LCRIIL FGL+I R D STDG+WCYIVFWV   +   +  W  LK RL+ ACPSC    G  Y+        PP ++LL F C DRKGLLHDVT+VL ELE TI++VKV TTPDG+V+D+FFITD  +LLHTK+R+ +T + LT +LG+  +S ++EL GPE+ +  + S   P A  +++F  +  D++ S    S+   + +DN LSPAHTL+QI C D KGL +DI+RT KD ++ I+YGRF++K +G   ++LF+   DG KI+DP  Q +  +RL+ E++ PLRV IV+RGPDTELLVANPVELSGKGRP VF+D+TL+LK LG CIFSAEIGRH   DR+WEVY+ LL E     +     RN++ + V K LMGW
Sbjct:    1 MGILNDDAVLIEPGKISGDPTVVTVNCPDESGLGSTLCRIILEFGLSITRADFSTDGRWCYIVFWVTPDISSPKIDWDSLKNRLLSACPSCL---GSFYFCLQSNVSKPPSLYLLKFFCRDRKGLLHDVTKVLTELEFTIQRVKVMTTPDGRVLDMFFITDAMDLLHTKQRQTKTCDHLTAVLGEHGVSCELELAGPELESVQRFSSLPPLA-ADELFGPDGFDISGSS---SNKAVLTVDNQLSPAHTLLQIRCVDQKGLFYDILRTSKDCDVHIAYGRFSSKVKGYRNLELFVRGTDGNKIMDPKHQANFCARLKEEMVCPLRVIIVNRGPDTELLVANPVELSGKGRPRVFYDVTLALKSLGICIFSAEIGRHSTLDRQWEVYRFLLDESREFPLASLRARNQVVDRVTKTLMGW 411

The following BLAST results are available for this feature:

BLAST of rna-KK1_036684 vs. DB:Swiss

BLAST of rna-KK1_036684 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
ACR10_ARATH	0.000e+0	67.71	ACT domain-containing protein ACR10 OS=Arabidopsis...	[more]
ACR9_ARATH	1.148e-144	53.59	ACT domain-containing protein ACR9 OS=Arabidopsis ...	[more]

InterPro

Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.260		coord: 109..192 e-value: 4.6E-7 score: 32.0
None	No IPR available	SUPERFAMILY	55021	ACT-like	coord: 19..81
None	No IPR available	SUPERFAMILY	55021	ACT-like	coord: 107..181
IPR002912	ACT domain	PFAM	PF01842	ACT	coord: 111..167 e-value: 2.1E-7 score: 30.6
IPR002912	ACT domain	PROSITE	PS51671	ACT	coord: 247..328 score: 7.051
IPR002912	ACT domain	PROSITE	PS51671	ACT	coord: 111..194 score: 13.484

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Scaffold128880-KQ483745.1:47195..50406+
coding sequence from alignment at Scaffold128880-KQ483745.1:47195..50406+

mRNA sequence

>rna-KK1_036684_Cc_Asha_v1.0 ID=rna-KK1_036684_Cc_Asha_v1.0; Name=rna-KK1_036684; organism=Cajanus cajan; type=mRNA; length=1239bp
ATGGGTATACTGTACGACGACGTAGTGATCATAAGGGAGCCAGAGAAAGA
CGGTGACCCAACAGTTATCACAGTGAACTGCCCTGACAAAACCGGTTTGG
GCTGCGATTTGTGTCGTATCATACTCTTCTTTGGTCTCAACATAGTCAGA
GGAGATGTGTCAACGGATGGAAAATGGTGCTACATAGTTTTCTGGGTGGT
TGGGAAACAGAGGACGAGGTGGGGTTTGTTGAAGAAGAGACTAATTGAGG
CATGCCCTTCTTGTTCTTCAGCTTCTGGAATCTCCTATTACCGCTCTGAT
TTGCAGCCATGTAACCCTCCTGATGTCTTTCTTCTGAACTTTTCTTGTCA
CGATCGGAAAGGCCTTTTGCATGATGTTACTGAGGTTCTTTGTGAGCTAG
AACTTACTATAAAGAAAGTGAAGGTATCTACTACACCTGATGGCAAAGTG
ATGGATCTATTTTTCATCACAGATACTAGGGAACTTCTACATACAAAGAA
GAGAAAGGACGAAACAATTGAACAGCTAACAGAGATTTTGGGGGATGCTA
TCATTTCTATTGACATCGAATTGGTTGGCCCGGAAATTACTGCTTGTTCC
CAGGCATCTCCATTCCTTCCAACTGCAATCACAGAAGATGTTTTTAATTT
GGAATTGCCTGATTTGGCTCGAAGTGGAACTCTCAGATCAGATTATGTTT
CAATTGCGATGGATAACTTGCTTAGTCCTGCTCACACCCTTGTCCAAATT
ATGTGCCAGGACCACAAAGGTCTTCTTTTTGACATCATGAGAACTCTGAA
GGACTACAACATTAAGATTTCTTATGGGCGTTTCACTACAAAACCTAGAG
GAAAATGTGAGATTGACTTGTTCATCATGCAAGCAGATGGCAAAAAGATA
GTCGACCCCAACAAGCAGAATTCTTTGTCATCACGCCTTAGAATGGAACT
ACTTCGTCCACTCAGAGTTGCTATTGTGAGTAGGGGCCCTGATACCGAGC
TTCTGGTTGCAAATCCTGTGGAGTTATCTGGCAAAGGCCGACCTCTTGTT
TTTCATGATATCACTCTTTCTCTGAAAATGCTTGGCACTTGCATCTTTTC
GGCTGAAATTGGGAGACACTTGATTGGAGATCGAGAGTGGGAGGTTTATA
AAATCTTGCTTGGTGAAGGGGAGGGGTTGTCTGTTCCAAGGAACAAGATT
GAAGAGGGAGTTTGGAAAATGCTGATGGGATGGGAATAA

protein sequence of rna-KK1_036684_Cc_Asha_v1.0

>rna-KK1_036684_Cc_Asha_v1.0 ID=rna-KK1_036684_Cc_Asha_v1.0; Name=rna-KK1_036684_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=412bp
MGILYDDVVIIREPEKDGDPTVITVNCPDKTGLGCDLCRIILFFGLNIVR
GDVSTDGKWCYIVFWVVGKQRTRWGLLKKRLIEACPSCSSASGISYYRSD
LQPCNPPDVFLLNFSCHDRKGLLHDVTEVLCELELTIKKVKVSTTPDGKV
MDLFFITDTRELLHTKKRKDETIEQLTEILGDAIISIDIELVGPEITACS
QASPFLPTAITEDVFNLELPDLARSGTLRSDYVSIAMDNLLSPAHTLVQI
MCQDHKGLLFDIMRTLKDYNIKISYGRFTTKPRGKCEIDLFIMQADGKKI
VDPNKQNSLSSRLRMELLRPLRVAIVSRGPDTELLVANPVELSGKGRPLV
FHDITLSLKMLGTCIFSAEIGRHLIGDREWEVYKILLGEGEGLSVPRNKI
EEGVWKMLMGWE

mRNA from alignment at Scaffold128880-KQ483745.1:47195..50406+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-KK1_036684_Cc_Asha_v1.0 ID=rna-KK1_036684_Cc_Asha_v1.0; Name=rna-KK1_036684; organism=Cajanus cajan; type=mRNA; length=3212bp; location=Sequence derived from: Scaffold128880-KQ483745.1:47195..50406+ (Cajanus cajan
ATGGGTATACTGTACGACGACGTAGTGATCATAAGGGAGCCAGAGAAAGA
CGGTGACCCAACAGTTATCACAGTGAACTGCCCTGACAAAACCGGTTTGG
GCTGCGATTTGTGTCGTATCATACTCTTCTTTGGTCTCAACATAGTCAGA
GGAGGTAACATGTGTTATCAATTATCATAGTACTTTGTGTTGGTTTGAGG
TTGAGGGAGgctaatgttttttttttttttttaattttttatttgctgCA
ATGAAGATGTGTCAACGGATGGAAAATGGTGCTACATAGTTTTCTGGGTG
GTTGGGAAACAGAGGACGAGGTGGGGTTTGTTGAAGAAGAGACTAATTGA
GGCATGCCCTTCTTGTTCTTCAGCTTCTGGAATCTCCTATTACCGCTCTG
ATTTGCAGCCATGTAACCCTCCTGATGTCTTTCTTCTGAACTTTTCTTGT
CACGATCGGAAAGGCCTTTTGCATGGTAATTATGGAAACTCTATTGGTTG
GTTGCTCTAAGACTTGGTTGGTTTTTGATTACTTGATGTCTTTATTGTTT
CTATATAAGGTCAAGAATCAACACTTTGGCCTTTAGGCTTCATGATATGA
TGAgggttttaaacttttaatttctctcaaggttttaaattgtggtCATG
ATGTTGTGGAGTTCCAGTTCCTTGATATTGTGGGAAATTGTGGACAAATG
TGGTTGATGTGGTCATAATTGCAGTCGCAGTGACTCCAACAATTTCGACA
TTGTTGCCGAAATCGCAGTGTGGACCGGTTTTTAAAACCTATTTTGTTCT
AACTTTTTTGGGGGAGTGGTAAATGAAACGAAGGGTTTGGTTTGATTGTT
GTGAAAATTGTGCTAAGAGGAAAATGAACTGGCTGTCTTAAAACAGCCAT
TTGATGTCATTCTAAAATGGATTCCAATTCCAAAGCTTTGTTGTTTTCTA
TTCATGGATACATACACTGTGCCTGTCGTGAATTTTACCTCCCTTCCTAG
ATATATGGTTTTTGTAAGATCATCACTTCGTGACATTGATTTTGTGTGGA
TTTGGTAGACAGAACAATATATCTGAATATCTTTATGATGGTGGCAGATG
TTACTGAGGTTCTTTGTGAGCTAGAACTTACTATAAAGAAAGTGAAGGTA
TCTACTACACCTGATGGCAAAGTGATGGATCTATTTTTCATCACAGATAC
TAGGTTTGCATTTTATAGTTGCTGTCCTTCaattattaattcatttatgT
TGAaacttttttatctatttattaagaCTGCATATGAATTagaatgaaaa
ttgattttgcttttgcttttttcTTCTCCATGAAAATATGCATCTTGAat
ggaattaaaatatatggTATCTGAGTTGTAAAAACCAGATGTAATCACTT
GTGAAATTGTGTGCAGAGCTACTGTCATCTTGATGGTCATTCTATTTGGT
tctgctaaaaaaaaaaattgtgtttgttCTGGGGAATGTGCTAATATACT
CCACGATCAAAGTCTTTTAGATAGCCAACCTGTTTCATTAGAGAATGTTC
GGATGTGTTTTATCACTTTATGAGAATGGAAGTTTATTTGCTTATGTCCA
CATGCCCATTGAATGACAATATCATCACTCTCAGAACATACTAATATAGT
TTACTGCTTATTCTTGCATTGAATTAGGGAACTTCTACATACAAAGAAGA
GAAAGGACGAAACAATTGAACAGCTAACAGAGATTTTGGGGGATGCTATC
ATTTCTATTGACATCGAATTGGTTGGCCCGGAAATTACTGCTTGTTCCCA
GGCATCTCCATTCCTTCCAACTGCAATCACAGaagatgtttttaatttgg
aattGCCTGATTTGGCTCGAAGTGGAACTCTCAGATCAGATTATGTTTCA
ATTGCGATGGATAACTTGCTTAGTCCTGCTCACACCCTTGTCCAAATTAT
GTGCCAGGACCACAAAGGTCTTCTTTTTGACATCATGAGAACTCTGAAGG
ACTACAACATTAAGGTATAGAAATTTGAAATCTAGATAATAATACTATAT
TTCTGAGAGTTCATTTTTGCTGCTATAAATTGGCTTGCATCAGAAAAGGA
AAGCACTGTTAAGCTataatataaactttatttCATCTTAGATTGCAGTT
TTGTACATGAATATTGAATACGACATATGAAGTTTCACTTTCCTTCCACT
CTGGCTGATTGTCTTTGTTTTTCTAATCTTCATGAACACTGGCATACATA
TACTTTCTAAGTCATCTTTAGTATCCTAAGGGTGCAAGGTTTGTCATTCA
ACCAGATTTCTTATGGGCGTTTCACTACAAAACCTAGAGGAAAATGTGAG
ATTGACTTGTTCATCATGCAAGCAGATGGCAAAAAGATAGTCGACCCCAA
CAAGCAGAATTCTTTGTCATCACGCCTTAGAATGGAACTACTTCGTCCAC
TCAGAGTTGCTATTGTGAGTAGGGGCCCTGATACCGAGCTTCTGGTTGCA
AATCCTGTGGAGTTATCTGGCAAAGGCCGACCTCTTGTTTTTCATGATAT
CACTCTTTCTCTGAAAATGCTTGGCACTTGCATCTTTTCGGTATGTATGC
TTCCTACTGTTTAGTGAAGCCATAATTTGAAATTTCCACAATATCATGAC
TTATCACTTTCTTGAATCATGCTCCGTTGCTCGTTAACACAAAACAGTAT
TACTAGATTTCACATGCTTAGTGTTTTTTGTTCTAGCAACTTGATAcatt
tgtgtttgcatgttgttattTGCAATTGAGTAAATTGTATGGACACTTCT
GAGATTTCGTGAGATTGTACACAACCCTCCTgcttttataatgtttataa
cAACCTTCCTTAATACAGTgtaatgtttttcaaacaattcAGGAGATAGT
GTAATGTGTACGTATCAAACAATTATAGGCGTTAGTATAGGGATAAAAAA
AAGCAGGAACGTGTGCAAATTCACAAAACCTCAAGTGGCATCGTTGTTAT
GTACTCCTCATAATTTGTTTTCTATCTTGTTTTCCAAGACAATGTGTTTA
TATTCTGGTTAACTGTTGCAACAGGCTGAAATTGGGAGACACTTGATTGG
AGATCGAGAGTGGGAGGTTTATAAAATCTTGCTTGGTGAAGGGGAGGGGT
TGTCTGTTCCAAGGAACAAGATTGAAGAGGGAGTTTGGAAAATGCTGATG
GGATGGGAATAA

Coding sequence (CDS) from alignment at Scaffold128880-KQ483745.1:47195..50406+

>rna-KK1_036684_Cc_Asha_v1.0 ID=rna-KK1_036684_Cc_Asha_v1.0; Name=rna-KK1_036684; organism=Cajanus cajan; type=CDS; length=2478bp; location=Sequence derived from: Scaffold128880-KQ483745.1:47195..50406+ (Cajanus cajan
ATGGGTATACTGTACGACGACGTAGTGATCATAAGGGAGCCAGAGAAAGA
CGGTGACCCAACAGTTATCACAGTGAACTGCCCTGACAAAACCGGTTTGG
GCTGCGATTTGTGTCGTATCATACTCTTCTTTGGTCTCAACATAGTCAGA
GGAGATGGGTATACTGTACGACGACGTAGTGATCATAAGGGAGCCAGAGA
AAGACGGTGACCCAACAGTTATCACAGTGAACTGCCCTGACAAAACCGGT
TTGGGCTGCGATTTGTGTCGTATCATACTCTTCTTTGGTCTCAACATAGT
CAGAGGAGATGTGTCAACGGATGGAAAATGGTGCTACATAGTTTTCTGGG
TGGTTGGGAAACAGAGGACGAGGTGGGGTTTGTTGAAGAAGAGACTAATT
GAGGCATGCCCTTCTTGTTCTTCAGCTTCTGGAATCTCCTATTACCGCTC
TGATTTGCAGCCATGTAACCCTCCTGATGTCTTTCTTCTGAACTTTTCTT
GTCACGATCGGAAAGGCCTTTTGCATGATGTGTCAACGGATGGAAAATGG
TGCTACATAGTTTTCTGGGTGGTTGGGAAACAGAGGACGAGGTGGGGTTT
GTTGAAGAAGAGACTAATTGAGGCATGCCCTTCTTGTTCTTCAGCTTCTG
GAATCTCCTATTACCGCTCTGATTTGCAGCCATGTAACCCTCCTGATGTC
TTTCTTCTGAACTTTTCTTGTCACGATCGGAAAGGCCTTTTGCATGATGT
TACTGAGGTTCTTTGTGAGCTAGAACTTACTATAAAGAAAGTGAAGGTAT
CTACTACACCTGATGGCAAAGTGATGGATCTATTTTTCATCACAGATACT
AGATGTTACTGAGGTTCTTTGTGAGCTAGAACTTACTATAAAGAAAGTGA
AGGTATCTACTACACCTGATGGCAAAGTGATGGATCTATTTTTCATCACA
GATACTAGGGAACTTCTACATACAAAGAAGAGAAAGGACGAAACAATTGA
ACAGCTAACAGAGATTTTGGGGGATGCTATCATTTCTATTGACATCGAAT
TGGTTGGCCCGGAAATTACTGCTTGTTCCCAGGCATCTCCATTCCTTCCA
ACTGCAATCACAGaagatgtttttaatttggaattGCCTGATTTGGCTCG
AAGTGGAACTCTCAGATCAGATTATGTTTCAATTGCGATGGATAACTTGC
TTAGTCCTGCTCACACCCTTGTCCAAATTATGTGCCAGGACCACAAAGGT
CTTCTTTTTGACATCATGAGAACTCTGAAGGACTACAACATTAAGGGAAC
TTCTACATACAAAGAAGAGAAAGGACGAAACAATTGAACAGCTAACAGAG
ATTTTGGGGGATGCTATCATTTCTATTGACATCGAATTGGTTGGCCCGGA
AATTACTGCTTGTTCCCAGGCATCTCCATTCCTTCCAACTGCAATCACAG
aagatgtttttaatttggaattGCCTGATTTGGCTCGAAGTGGAACTCTC
AGATCAGATTATGTTTCAATTGCGATGGATAACTTGCTTAGTCCTGCTCA
CACCCTTGTCCAAATTATGTGCCAGGACCACAAAGGTCTTCTTTTTGACA
TCATGAGAACTCTGAAGGACTACAACATTAAGATTTCTTATGGGCGTTTC
ACTACAAAACCTAGAGGAAAATGTGAGATTGACTTGTTCATCATGCAAGC
AGATGGCAAAAAGATAGTCGACCCCAACAAGCAGAATTCTTTGTCATCAC
GCCTTAGAATGGAACTACTTCGTCCACTCAGAGTTGCTATTGTGAGTAGG
GGCCCTGATACCGAGCTTCTGGTTGCAAATCCTGTGGAGTTATCTGGCAA
AGGCCGACCTCTTGTTTTTCATGATATCACTCTTTCTCTGAAAATGCTTG
GCACTTGCATCTTTTCGATTTCTTATGGGCGTTTCACTACAAAACCTAGA
GGAAAATGTGAGATTGACTTGTTCATCATGCAAGCAGATGGCAAAAAGAT
AGTCGACCCCAACAAGCAGAATTCTTTGTCATCACGCCTTAGAATGGAAC
TACTTCGTCCACTCAGAGTTGCTATTGTGAGTAGGGGCCCTGATACCGAG
CTTCTGGTTGCAAATCCTGTGGAGTTATCTGGCAAAGGCCGACCTCTTGT
TTTTCATGATATCACTCTTTCTCTGAAAATGCTTGGCACTTGCATCTTTT
CGGCTGAAATTGGGAGACACTTGATTGGAGATCGAGAGTGGGAGGTTTAT
AAAATCTTGCTTGGTGAAGGGGAGGGGTTGTCTGTTCCAAGGAACAAGAT
TGAAGAGGGAGTTTGGAAAATGCTGATGGGATGGGAATAAGCTGAAATTG
GGAGACACTTGATTGGAGATCGAGAGTGGGAGGTTTATAAAATCTTGCTT
GGTGAAGGGGAGGGGTTGTCTGTTCCAAGGAACAAGATTGAAGAGGGAGT
TTGGAAAATGCTGATGGGATGGGAATAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002912	ACT_dom

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