rna-KK1_032688

Transcript Overview


Name	rna-KK1_032688
Unique Name	rna-KK1_032688_Cc_Asha_v1.0
Type	mRNA
Organism	Cajanus cajan (pigeon pea)
Sequence length	879
Product	Retrotransposable element Tf2

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Scaffold126966-KQ483580.1	supercontig	Scaffold126966-KQ483580.1:229987..230865 +	Cajanus cajan Asha genome v1.0	n/a
Scaffold126966-KQ483580.1	supercontig	Scaffold126966-KQ483580.1:229987..230865 +	Cajanus cajan Asha genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cajanus cajan Asha genome v1.0	2019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot	2019-10-17

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cccrR0488	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
anccL0955	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
asccL1102	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
cctifR0523	Vicia faba cv. Tiffany genome v1.0	Vicia faba
ccvfhR0540	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
ccvrvR0538	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
ccvuaR0572	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
ccvssR0602	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
ccccaR0700	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccvumR0650	Vigna umbellata FF25 genome v1.0	Vigna umbellata

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-KK1_032688	gene-KK1_032688_Cc_Asha_v1.0	Cajanus cajan	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-KK1_032688	rna-KK1_032688_Cc_Asha_v1.0-protein	Cajanus cajan	polypeptide
rna-KK1_032688_Cc_Asha_v1.0	rna-KK1_032688_Cc_Asha_v1.0	Cajanus cajan	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-KK1_032688_Cc_Asha_v1.0-exon-Scaffold126966-KQ483580.1_Cc_Asha_v1.0-1571082112:229987..230865	rna-KK1_032688_Cc_Asha_v1.0-exon-Scaffold126966-KQ483580.1_Cc_Asha_v1.0-1571082112:229987..230865	Cajanus cajan	exon
rna-KK1_032688_Cc_Asha_v1.0-exon-Scaffold126966-KQ483580.1_Cc_Asha_v1.0-1571847872:229987..230865	rna-KK1_032688_Cc_Asha_v1.0-exon-Scaffold126966-KQ483580.1_Cc_Asha_v1.0-1571847872:229987..230865	Cajanus cajan	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-KK1_032688_Cc_Asha_v1.0-CDS-Scaffold126966-KQ483580.1_Cc_Asha_v1.0-1571082112:229987..230865	rna-KK1_032688_Cc_Asha_v1.0-CDS-Scaffold126966-KQ483580.1_Cc_Asha_v1.0-1571082112:229987..230865	Cajanus cajan	CDS
rna-KK1_032688_Cc_Asha_v1.0-CDS-Scaffold126966-KQ483580.1_Cc_Asha_v1.0-1571847872:229987..230865	rna-KK1_032688_Cc_Asha_v1.0-CDS-Scaffold126966-KQ483580.1_Cc_Asha_v1.0-1571847872:229987..230865	Cajanus cajan	CDS

Homology

[Close]

BLAST of rna-KK1_032688 vs. DB:Swiss
Match: TF211_SCHPO (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.148e-26
Identity = 70/222 (31.53%), Postives = 114/222 (51.35%), Query Frame = 1

Query:    1 MGSPLLIVSDRDKIFLSHFWSELFKLVGTRLKFSTAYHPQTDGQTEVVNRCLETYLRCLTGSKPKQWPKWLSWTEFWFNTNYNSSLKLTPFKALYGRDPPHLLKGTTIPSTVEEVNLMTYDRDQMLHDLKENLVTAQNQMKKYADQSRRAV-SLAIGDWVYLKLKPYRLRSLARKRNEKLSPRFYGPYQITKQIGVVAFQLALPPESK--IHPVFHVSLLKK 657
             G+P  I++D D IF S  W +        +KFS  Y PQTDGQTE  N+ +E  LRC+  + P  W   +S  +  +N   +S+ ++TPF+ ++   P   L    +PS  ++ +  + +  Q+   +KE+L T   +MKKY D   + +     GD V +K    R ++    ++ KL+P F GP+ + ++ G   ++L LP   K      FHVS L+K
Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPA--LSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256

[Close]

BLAST of rna-KK1_032688 vs. DB:Swiss
Match: TF28_SCHPO (Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-8 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.274e-26
Identity = 70/222 (31.53%), Postives = 114/222 (51.35%), Query Frame = 1

Query:    1 MGSPLLIVSDRDKIFLSHFWSELFKLVGTRLKFSTAYHPQTDGQTEVVNRCLETYLRCLTGSKPKQWPKWLSWTEFWFNTNYNSSLKLTPFKALYGRDPPHLLKGTTIPSTVEEVNLMTYDRDQMLHDLKENLVTAQNQMKKYADQSRRAV-SLAIGDWVYLKLKPYRLRSLARKRNEKLSPRFYGPYQITKQIGVVAFQLALPPESK--IHPVFHVSLLKK 657
             G+P  I++D D IF S  W +        +KFS  Y PQTDGQTE  N+ +E  LRC+  + P  W   +S  +  +N   +S+ ++TPF+ ++   P   L    +PS  ++ +  + +  Q+   +KE+L T   +MKKY D   + +     GD V +K    R ++    ++ KL+P F GP+ + ++ G   ++L LP   K      FHVS L+K
Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPA--LSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256

[Close]

BLAST of rna-KK1_032688 vs. DB:Swiss
Match: TF27_SCHPO (Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-7 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.274e-26
Identity = 70/222 (31.53%), Postives = 114/222 (51.35%), Query Frame = 1

Query:    1 MGSPLLIVSDRDKIFLSHFWSELFKLVGTRLKFSTAYHPQTDGQTEVVNRCLETYLRCLTGSKPKQWPKWLSWTEFWFNTNYNSSLKLTPFKALYGRDPPHLLKGTTIPSTVEEVNLMTYDRDQMLHDLKENLVTAQNQMKKYADQSRRAV-SLAIGDWVYLKLKPYRLRSLARKRNEKLSPRFYGPYQITKQIGVVAFQLALPPESK--IHPVFHVSLLKK 657
             G+P  I++D D IF S  W +        +KFS  Y PQTDGQTE  N+ +E  LRC+  + P  W   +S  +  +N   +S+ ++TPF+ ++   P   L    +PS  ++ +  + +  Q+   +KE+L T   +MKKY D   + +     GD V +K    R ++    ++ KL+P F GP+ + ++ G   ++L LP   K      FHVS L+K
Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPA--LSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256

[Close]

BLAST of rna-KK1_032688 vs. DB:Swiss
Match: TF29_SCHPO (Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-9 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.477e-26
Identity = 70/222 (31.53%), Postives = 114/222 (51.35%), Query Frame = 1

Query:    1 MGSPLLIVSDRDKIFLSHFWSELFKLVGTRLKFSTAYHPQTDGQTEVVNRCLETYLRCLTGSKPKQWPKWLSWTEFWFNTNYNSSLKLTPFKALYGRDPPHLLKGTTIPSTVEEVNLMTYDRDQMLHDLKENLVTAQNQMKKYADQSRRAV-SLAIGDWVYLKLKPYRLRSLARKRNEKLSPRFYGPYQITKQIGVVAFQLALPPESK--IHPVFHVSLLKK 657
             G+P  I++D D IF S  W +        +KFS  Y PQTDGQTE  N+ +E  LRC+  + P  W   +S  +  +N   +S+ ++TPF+ ++   P   L    +PS  ++ +  + +  Q+   +KE+L T   +MKKY D   + +     GD V +K    R ++    ++ KL+P F GP+ + ++ G   ++L LP   K      FHVS L+K
Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPA--LSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256

[Close]

BLAST of rna-KK1_032688 vs. DB:Swiss
Match: TF24_SCHPO (Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-4 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.477e-26
Identity = 70/222 (31.53%), Postives = 114/222 (51.35%), Query Frame = 1

Query:    1 MGSPLLIVSDRDKIFLSHFWSELFKLVGTRLKFSTAYHPQTDGQTEVVNRCLETYLRCLTGSKPKQWPKWLSWTEFWFNTNYNSSLKLTPFKALYGRDPPHLLKGTTIPSTVEEVNLMTYDRDQMLHDLKENLVTAQNQMKKYADQSRRAV-SLAIGDWVYLKLKPYRLRSLARKRNEKLSPRFYGPYQITKQIGVVAFQLALPPESK--IHPVFHVSLLKK 657
             G+P  I++D D IF S  W +        +KFS  Y PQTDGQTE  N+ +E  LRC+  + P  W   +S  +  +N   +S+ ++TPF+ ++   P   L    +PS  ++ +  + +  Q+   +KE+L T   +MKKY D   + +     GD V +K    R ++    ++ KL+P F GP+ + ++ G   ++L LP   K      FHVS L+K
Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPA--LSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256

[Close]

BLAST of rna-KK1_032688 vs. DB:Swiss
Match: TF22_SCHPO (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.477e-26
Identity = 70/222 (31.53%), Postives = 114/222 (51.35%), Query Frame = 1

Query:    1 MGSPLLIVSDRDKIFLSHFWSELFKLVGTRLKFSTAYHPQTDGQTEVVNRCLETYLRCLTGSKPKQWPKWLSWTEFWFNTNYNSSLKLTPFKALYGRDPPHLLKGTTIPSTVEEVNLMTYDRDQMLHDLKENLVTAQNQMKKYADQSRRAV-SLAIGDWVYLKLKPYRLRSLARKRNEKLSPRFYGPYQITKQIGVVAFQLALPPESK--IHPVFHVSLLKK 657
             G+P  I++D D IF S  W +        +KFS  Y PQTDGQTE  N+ +E  LRC+  + P  W   +S  +  +N   +S+ ++TPF+ ++   P   L    +PS  ++ +  + +  Q+   +KE+L T   +MKKY D   + +     GD V +K    R ++    ++ KL+P F GP+ + ++ G   ++L LP   K      FHVS L+K
Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPA--LSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256

[Close]

BLAST of rna-KK1_032688 vs. DB:Swiss
Match: TF21_SCHPO (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.477e-26
Identity = 70/222 (31.53%), Postives = 114/222 (51.35%), Query Frame = 1

Query:    1 MGSPLLIVSDRDKIFLSHFWSELFKLVGTRLKFSTAYHPQTDGQTEVVNRCLETYLRCLTGSKPKQWPKWLSWTEFWFNTNYNSSLKLTPFKALYGRDPPHLLKGTTIPSTVEEVNLMTYDRDQMLHDLKENLVTAQNQMKKYADQSRRAV-SLAIGDWVYLKLKPYRLRSLARKRNEKLSPRFYGPYQITKQIGVVAFQLALPPESK--IHPVFHVSLLKK 657
             G+P  I++D D IF S  W +        +KFS  Y PQTDGQTE  N+ +E  LRC+  + P  W   +S  +  +N   +S+ ++TPF+ ++   P   L    +PS  ++ +  + +  Q+   +KE+L T   +MKKY D   + +     GD V +K    R ++    ++ KL+P F GP+ + ++ G   ++L LP   K      FHVS L+K
Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPA--LSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256

[Close]

BLAST of rna-KK1_032688 vs. DB:Swiss
Match: TF26_SCHPO (Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-6 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.500e-26
Identity = 70/222 (31.53%), Postives = 114/222 (51.35%), Query Frame = 1

Query:    1 MGSPLLIVSDRDKIFLSHFWSELFKLVGTRLKFSTAYHPQTDGQTEVVNRCLETYLRCLTGSKPKQWPKWLSWTEFWFNTNYNSSLKLTPFKALYGRDPPHLLKGTTIPSTVEEVNLMTYDRDQMLHDLKENLVTAQNQMKKYADQSRRAV-SLAIGDWVYLKLKPYRLRSLARKRNEKLSPRFYGPYQITKQIGVVAFQLALPPESK--IHPVFHVSLLKK 657
             G+P  I++D D IF S  W +        +KFS  Y PQTDGQTE  N+ +E  LRC+  + P  W   +S  +  +N   +S+ ++TPF+ ++   P   L    +PS  ++ +  + +  Q+   +KE+L T   +MKKY D   + +     GD V +K    R ++    ++ KL+P F GP+ + ++ G   ++L LP   K      FHVS L+K
Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPA--LSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256

[Close]

BLAST of rna-KK1_032688 vs. DB:Swiss
Match: TF25_SCHPO (Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-5 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.500e-26
Identity = 70/222 (31.53%), Postives = 114/222 (51.35%), Query Frame = 1

Query:    1 MGSPLLIVSDRDKIFLSHFWSELFKLVGTRLKFSTAYHPQTDGQTEVVNRCLETYLRCLTGSKPKQWPKWLSWTEFWFNTNYNSSLKLTPFKALYGRDPPHLLKGTTIPSTVEEVNLMTYDRDQMLHDLKENLVTAQNQMKKYADQSRRAV-SLAIGDWVYLKLKPYRLRSLARKRNEKLSPRFYGPYQITKQIGVVAFQLALPPESK--IHPVFHVSLLKK 657
             G+P  I++D D IF S  W +        +KFS  Y PQTDGQTE  N+ +E  LRC+  + P  W   +S  +  +N   +S+ ++TPF+ ++   P   L    +PS  ++ +  + +  Q+   +KE+L T   +MKKY D   + +     GD V +K    R ++    ++ KL+P F GP+ + ++ G   ++L LP   K      FHVS L+K
Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPA--LSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256

[Close]

BLAST of rna-KK1_032688 vs. DB:Swiss
Match: TF23_SCHPO (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.500e-26
Identity = 70/222 (31.53%), Postives = 114/222 (51.35%), Query Frame = 1

Query:    1 MGSPLLIVSDRDKIFLSHFWSELFKLVGTRLKFSTAYHPQTDGQTEVVNRCLETYLRCLTGSKPKQWPKWLSWTEFWFNTNYNSSLKLTPFKALYGRDPPHLLKGTTIPSTVEEVNLMTYDRDQMLHDLKENLVTAQNQMKKYADQSRRAV-SLAIGDWVYLKLKPYRLRSLARKRNEKLSPRFYGPYQITKQIGVVAFQLALPPESK--IHPVFHVSLLKK 657
             G+P  I++D D IF S  W +        +KFS  Y PQTDGQTE  N+ +E  LRC+  + P  W   +S  +  +N   +S+ ++TPF+ ++   P   L    +PS  ++ +  + +  Q+   +KE+L T   +MKKY D   + +     GD V +K    R ++    ++ KL+P F GP+ + ++ G   ++L LP   K      FHVS L+K
Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPA--LSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256

The following BLAST results are available for this feature:

BLAST of rna-KK1_032688 vs. DB:Swiss

BLAST of rna-KK1_032688 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
TF211_SCHPO	2.148e-26	31.53	Transposon Tf2-11 polyprotein OS=Schizosaccharomyc...	[more]
TF28_SCHPO	2.274e-26	31.53	Transposon Tf2-8 polyprotein OS=Schizosaccharomyce...	[more]
TF27_SCHPO	2.274e-26	31.53	Transposon Tf2-7 polyprotein OS=Schizosaccharomyce...	[more]
TF29_SCHPO	2.477e-26	31.53	Transposon Tf2-9 polyprotein OS=Schizosaccharomyce...	[more]
TF24_SCHPO	2.477e-26	31.53	Transposon Tf2-4 polyprotein OS=Schizosaccharomyce...	[more]
TF22_SCHPO	2.477e-26	31.53	Transposon Tf2-2 polyprotein OS=Schizosaccharomyce...	[more]
TF21_SCHPO	2.477e-26	31.53	Transposon Tf2-1 polyprotein OS=Schizosaccharomyce...	[more]
TF26_SCHPO	2.500e-26	31.53	Transposon Tf2-6 polyprotein OS=Schizosaccharomyce...	[more]
TF25_SCHPO	2.500e-26	31.53	Transposon Tf2-5 polyprotein OS=Schizosaccharomyce...	[more]
TF23_SCHPO	2.500e-26	31.53	Transposon Tf2-3 polyprotein OS=Schizosaccharomyce...	[more]

InterPro

Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 126..146
None	No IPR available	CDD	cd18979	CD_POL_like	coord: 242..289 e-value: 1.62423E-8 score: 47.8705
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..139 e-value: 2.3E-36 score: 126.9
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..98 score: 13.094
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 207..283
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..96

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Scaffold126966-KQ483580.1:229987..230865+
coding sequence from alignment at Scaffold126966-KQ483580.1:229987..230865+

mRNA sequence

>rna-KK1_032688_Cc_Asha_v1.0 ID=rna-KK1_032688_Cc_Asha_v1.0; Name=rna-KK1_032688; organism=Cajanus cajan; type=mRNA; length=879bp
ATGGGTTCCCCTCTTCTAATTGTATCGGATCGTGACAAAATATTCCTCAG
TCACTTCTGGTCAGAATTGTTCAAATTGGTCGGCACTCGACTCAAGTTTA
GCACCGCATACCATCCCCAAACAGATGGACAAACTGAGGTGGTCAACCGG
TGCTTAGAAACTTATCTGAGGTGCCTCACTGGAAGTAAGCCTAAGCAGTG
GCCTAAGTGGTTGAGTTGGACTGAGTTCTGGTTTAACACCAACTACAACA
GCTCTCTAAAATTGACTCCTTTCAAAGCATTATATGGCCGCGATCCACCC
CATCTTCTGAAGGGAACCACTATTCCGTCAACTGTGGAAGAGGTGAACCT
GATGACTTATGACCGGGATCAAATGTTACATGATCTCAAGGAAAATTTGG
TCACAGCCCAGAATCAAATGAAGAAGTATGCTGACCAATCTCGACGTGCA
GTATCCTTGGCTATTGGTGATTGGGTGTATCTCAAGCTCAAGCCGTATAG
GCTACGGTCATTGGCTCGAAAAAGAAATGAGAAGCTGAGTCCACGTTTTT
ATGGTCCTTATCAGATCACAAAACAGATTGGAGTAGTTGCTTTTCAGTTA
GCCCTTCCACCAGAGAGTAAAATTCACCCTGTGTTCCATGTTTCTTTACT
CAAGAAGGCCCTCTCTCCCTCAGCAACTCCTCAGCCTTTACCACCTATGT
TGTCGGAAGAGTTGGAATTGCAGGTAACCCCAGCTGCTGTGAAAGTAGTG
CGTAACACTGCTCACGGGATTGCCGAAGTGCTTATTCAGTGGACTGACCT
GCCAGAATTTGAAGCCACTTGGGAACCAGTGGAACCCATCATGAAGCAAT
TTCCTTCTTTCACCTTGAGGACAAGGTGA

protein sequence of rna-KK1_032688_Cc_Asha_v1.0

>rna-KK1_032688_Cc_Asha_v1.0 ID=rna-KK1_032688_Cc_Asha_v1.0; Name=rna-KK1_032688_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=292bp
MGSPLLIVSDRDKIFLSHFWSELFKLVGTRLKFSTAYHPQTDGQTEVVNR
CLETYLRCLTGSKPKQWPKWLSWTEFWFNTNYNSSLKLTPFKALYGRDPP
HLLKGTTIPSTVEEVNLMTYDRDQMLHDLKENLVTAQNQMKKYADQSRRA
VSLAIGDWVYLKLKPYRLRSLARKRNEKLSPRFYGPYQITKQIGVVAFQL
ALPPESKIHPVFHVSLLKKALSPSATPQPLPPMLSEELELQVTPAAVKVV
RNTAHGIAEVLIQWTDLPEFEATWEPVEPIMKQFPSFTLRTR

mRNA from alignment at Scaffold126966-KQ483580.1:229987..230865+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-KK1_032688_Cc_Asha_v1.0 ID=rna-KK1_032688_Cc_Asha_v1.0; Name=rna-KK1_032688; organism=Cajanus cajan; type=mRNA; length=879bp; location=Sequence derived from: Scaffold126966-KQ483580.1:229987..230865+ (Cajanus cajan
ATGGGTTCCCCTCTTCTAATTGTATCGGATCGTGACAAAATATTCCTCAG
TCACTTCTGGTCAGAATTGTTCAAATTGGTCGGCACTCGACTCAAGTTTA
GCACCGCATACCATCCCCAAACAGATGGACAAACTGAGGTGGTCAACCGG
TGCTTAGAAACTTATCTGAGGTGCCTCACTGGAAGTAAGCCTAAGCAGTG
GCCTAAGTGGTTGAGTTGGACTGAGTTCTGGTTTAACACCAACTACAACA
GCTCTCTAAAATTGACTCCTTTCAAAGCATTATATGGCCGCGATCCACCC
CATCTTCTGAAGGGAACCACTATTCCGTCAACTGTGGAAGAGGTGAACCT
GATGACTTATGACCGGGATCAAATGTTACATGATCTCAAGGAAAATTTGG
TCACAGCCCAGAATCAAATGAAGAAGTATGCTGACCAATCTCGACGTGCA
GTATCCTTGGCTATTGGTGATTGGGTGTATCTCAAGCTCAAGCCGTATAG
GCTACGGTCATTGGCTCGAAAAAGAAATGAGAAGCTGAGTCCACGTTTTT
ATGGTCCTTATCAGATCACAAAACAGATTGGAGTAGTTGCTTTTCAGTTA
GCCCTTCCACCAGAGAGTAAAATTCACCCTGTGTTCCATGTTTCTTTACT
CAAGAAGGCCCTCTCTCCCTCAGCAACTCCTCAGCCTTTACCACCTATGT
TGTCGGAAGAGTTGGAATTGCAGGTAACCCCAGCTGCTGTGAAAGTAGTG
CGTAACACTGCTCACGGGATTGCCGAAGTGCTTATTCAGTGGACTGACCT
GCCAGAATTTGAAGCCACTTGGGAACCAGTGGAACCCATCATGAAGCAAT
TTCCTTCTttcaccttgaggacaaggtga

Coding sequence (CDS) from alignment at Scaffold126966-KQ483580.1:229987..230865+

>rna-KK1_032688_Cc_Asha_v1.0 ID=rna-KK1_032688_Cc_Asha_v1.0; Name=rna-KK1_032688; organism=Cajanus cajan; type=CDS; length=1758bp; location=Sequence derived from: Scaffold126966-KQ483580.1:229987..230865+ (Cajanus cajan
ATGGGTTCCCCTCTTCTAATTGTATCGGATCGTGACAAAATATTCCTCAG
TCACTTCTGGTCAGAATTGTTCAAATTGGTCGGCACTCGACTCAAGTTTA
GCACCGCATACCATCCCCAAACAGATGGACAAACTGAGGTGGTCAACCGG
TGCTTAGAAACTTATCTGAGGTGCCTCACTGGAAGTAAGCCTAAGCAGTG
GCCTAAGTGGTTGAGTTGGACTGAGTTCTGGTTTAACACCAACTACAACA
GCTCTCTAAAATTGACTCCTTTCAAAGCATTATATGGCCGCGATCCACCC
CATCTTCTGAAGGGAACCACTATTCCGTCAACTGTGGAAGAGGTGAACCT
GATGACTTATGACCGGGATCAAATGTTACATGATCTCAAGGAAAATTTGG
TCACAGCCCAGAATCAAATGAAGAAGTATGCTGACCAATCTCGACGTGCA
GTATCCTTGGCTATTGGTGATTGGGTGTATCTCAAGCTCAAGCCGTATAG
GCTACGGTCATTGGCTCGAAAAAGAAATGAGAAGCTGAGTCCACGTTTTT
ATGGTCCTTATCAGATCACAAAACAGATTGGAGTAGTTGCTTTTCAGTTA
GCCCTTCCACCAGAGAGTAAAATTCACCCTGTGTTCCATGTTTCTTTACT
CAAGAAGGCCCTCTCTCCCTCAGCAACTCCTCAGCCTTTACCACCTATGT
TGTCGGAAGAGTTGGAATTGCAGGTAACCCCAGCTGCTGTGAAAGTAGTG
CGTAACACTGCTCACGGGATTGCCGAAGTGCTTATTCAGTGGACTGACCT
GCCAGAATTTGAAGCCACTTGGGAACCAGTGGAACCCATCATGAAGCAAT
TTCCTTCTttcaccttgaggacaaggtgaATGGGTTCCCCTCTTCTAATT
GTATCGGATCGTGACAAAATATTCCTCAGTCACTTCTGGTCAGAATTGTT
CAAATTGGTCGGCACTCGACTCAAGTTTAGCACCGCATACCATCCCCAAA
CAGATGGACAAACTGAGGTGGTCAACCGGTGCTTAGAAACTTATCTGAGG
TGCCTCACTGGAAGTAAGCCTAAGCAGTGGCCTAAGTGGTTGAGTTGGAC
TGAGTTCTGGTTTAACACCAACTACAACAGCTCTCTAAAATTGACTCCTT
TCAAAGCATTATATGGCCGCGATCCACCCCATCTTCTGAAGGGAACCACT
ATTCCGTCAACTGTGGAAGAGGTGAACCTGATGACTTATGACCGGGATCA
AATGTTACATGATCTCAAGGAAAATTTGGTCACAGCCCAGAATCAAATGA
AGAAGTATGCTGACCAATCTCGACGTGCAGTATCCTTGGCTATTGGTGAT
TGGGTGTATCTCAAGCTCAAGCCGTATAGGCTACGGTCATTGGCTCGAAA
AAGAAATGAGAAGCTGAGTCCACGTTTTTATGGTCCTTATCAGATCACAA
AACAGATTGGAGTAGTTGCTTTTCAGTTAGCCCTTCCACCAGAGAGTAAA
ATTCACCCTGTGTTCCATGTTTCTTTACTCAAGAAGGCCCTCTCTCCCTC
AGCAACTCCTCAGCCTTTACCACCTATGTTGTCGGAAGAGTTGGAATTGC
AGGTAACCCCAGCTGCTGTGAAAGTAGTGCGTAACACTGCTCACGGGATT
GCCGAAGTGCTTATTCAGTGGACTGACCTGCCAGAATTTGAAGCCACTTG
GGAACCAGTGGAACCCATCATGAAGCAATTTCCTTCTttcaccttgagga
caaggtga

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR016197	Chromo-like_dom_sf
IPR012337	RNaseH-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **Biological Process**
Term	Definition
GO:0015074	DNA integration

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