rna-KK1_036686

Transcript Overview
Namerna-KK1_036686
Unique Namerna-KK1_036686_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length1614
ProductPutative AC transposase
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_036686gene-KK1_036686_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_036686rna-KK1_036686_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_036686_Cc_Asha_v1.0rna-KK1_036686_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_036686_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:103004..104191rna-KK1_036686_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:103004..104191Cajanus cajanexon
rna-KK1_036686_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:103004..104191rna-KK1_036686_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:103004..104191Cajanus cajanexon
rna-KK1_036686_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:104572..104997rna-KK1_036686_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:104572..104997Cajanus cajanexon
rna-KK1_036686_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:104572..104997rna-KK1_036686_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:104572..104997Cajanus cajanexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_036686_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:103004..104191rna-KK1_036686_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:103004..104191Cajanus cajanCDS
rna-KK1_036686_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:103004..104191rna-KK1_036686_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:103004..104191Cajanus cajanCDS
rna-KK1_036686_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:104572..104997rna-KK1_036686_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:104572..104997Cajanus cajanCDS
rna-KK1_036686_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:104572..104997rna-KK1_036686_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:104572..104997Cajanus cajanCDS


Homology
BLAST of rna-KK1_036686 vs. DB:Swiss
Match: RSLE2_ORYSJ (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 8.884e-69
Identity = 135/421 (32.07%), Postives = 216/421 (51.31%), Query Frame = 1
Query:   19 GKERAKCNGCGKT--YVVGGKAYGTSHLNRHIP-------KCEKRKYEDMSQMILNMQGKLKSRKIDQMIFR---------------ELYCHLMIRHGFPFNFIESPVFKALITYLNPDENTFSKNTFKVDMWRIFIRDKARLKSELATIPNKICLTSDLWKSCNTEGFISLTTHYVDLNWKSNSKILNFHHMPPPHTGFELSKKIGDFLQDWGIEKKNFSITLDN-VSANDXXXXXXXXXXXXXXGLICDGEFFHVRCCAHVLNLIVQEGLKVLDGTLDQIRTSIKYLRGSESRMIKFKKCLKKFSDINSSSALCLDVPTRWNSTFLMLRSALKYQRVFGSLHLVDENYKYCPSDEEWERATKICKFLQPFYEITTLISGTSYPTSNLYFLQVWKIQCLLMGSVTGEDKVVRDMELKMHK 1206
            G  RA C  C +T  Y  G K  GTSHL RHI        K ++ K      +  +  G+    +  +  +R                    ++I H +P + ++ P F   I  L P        T + +++ ++ ++K  L    +T+P +I LT  LW +  T G++SL   ++D  WK + ++LNF  +  PH+   LS+ I   L DW ++ K F+ITLDN  S++D+    L+  L  +  L+  G+ F VRC AH+LN + Q+ +  + G +  IR SIK+++ S SR  KF +   +  +I S+  LCLDV T+WN+T+LML +AL Y++ F +L   D+NY   PS E+W++    C +L+  Y+    I   + PTSNL+F + WK+Q  L  +   ED V   +   MH+
Sbjct:   83 GATRACCKLCKQTFAYSSGSKIAGTSHLKRHITLGSCPIIKNQEHKLALTPAVGTDNDGEGTVERPSKRRYRYTGYANAAFDQDRSCSYLAKMIILHDYPLHIVQQPAFTTFIDSLQPRFRVVDVETMEGEVYAVYQKEKENLMQAFSTMPGRISLTIGLWTTSQTLGYVSLAGQFIDSEWKIHRRMLNFMMVSSPHSENALSEAISTSLSDWNMKDKLFTITLDNDCSSHDIYSANLRDYLSNKNNLMLKGQLFVVRCYAHILNAVAQDVIASIHGVIYNIRESIKFIKASPSREEKFAEIALQL-EIPSTKTLCLDVTTQWNTTYLMLLAALDYKQAFSTLETSDDNYNEAPSAEDWKKVEAACNYLKLLYDSAHSIMAAANPTSNLFFHEAWKLQLELSNATGHEDPVFSSIAKDMHE 502          

HSP 2 Score: 74.7146 bits (182), Expect = 1.090e-12
Identity = 46/114 (40.35%), Postives = 69/114 (60.53%), Query Frame = 1
Query: 1159 TGEDKVVRDMELKMHKLQVA-NKSGRTQLDIYLDEPTLDLDFTEHMDILQWWKNNSQRFPDLSLMARDFLSIPITTVAS-ESTFNIGSC--ILNKYRNRLLPENVEAIICVSSW 1488
            TG+  V  DM L     ++A ++  +++L+ YLDE        +  DIL WWK N+ +FP LS MARD L+IP++ V+S  S F+ G+   +L+ YR+ L PE VEA++C   W
Sbjct:  594 TGDGLVDFDMYLS----EIATSQPTKSELEQYLDESLTPR--IQEFDILNWWKLNTLKFPTLSRMARDILAIPMSMVSSGNSIFSAGTGTRMLDDYRSSLRPEIVEALVCAKDW 701          
BLAST of rna-KK1_036686 vs. DB:Swiss
Match: RSLE3_ORYSJ (Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0583200 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.515e-67
Identity = 134/422 (31.75%), Postives = 213/422 (50.47%), Query Frame = 1
Query:   19 GKERAKCNGCGKT--YVVGGKAYGTSHLNRHI--PKCEKRKYEDMS-----QMILNMQGKLKSRKIDQMIFREL---------------YCHLMIRHGFPFNFIESPVFKALITYLNPDENTFSKNTFKVDMWRIFIRDKARLKSELATIPNKICLTSDLWKSCNTEGFISLTTHYVDLNWKSNSKILNFHHMPPPHTGFELSKKIGDFLQDWGIEKKNFSITLDN-VSANDXXXXXXXX-XXXXXXGLICDGEFFHVRCCAHVLNLIVQEGLKVLDGTLDQIRTSIKYLRGSESRMIKFKKCLKKFSDINSSSALCLDVPTRWNSTFLMLRSALKYQRVFGSLHLVDENYKYCPSDEEWERATKICKFLQPFYEITTLISGTSYPTSNLYFLQVWKIQCLLMGSVTGEDKVVRDMELKMHK 1206
            G  RA CN C +T  Y  G K  GTSHL RHI    C   K EDM        + N  G+  + ++ +  +R                    ++I H +P + +E   F A I  L P       +T +  +  ++ +++  L    +T+P +I LT  LW +  T G+ISL   ++D  W+ + +++NF  +  PH+   LS+ I   L DW ++ K F+ITLDN  S++D+    +       +  ++  G+ F VRC AH+LN + Q+ +  +   +  IR SIK+++ S     KF +   +  +I S+  LCLDV T+WN+T+LML +AL YQ+VF SL   D +Y   PS E+W++    C +L   Y+    I     PTSN++F + WK+Q  L  ++  ED + R     MH+
Sbjct:  123 GVSRASCNLCKQTFAYSCGSKISGTSHLKRHITLASCPMLKNEDMKLSLPLATVTNNDGEGCAERVAKRHYRSTGYANAMFDQDRTCSNLAKMIILHDYPLHIVEQRGFTAFIGSLQPRFRVIDVDTIEGQVHSVYQKERENLMHVFSTVPGRISLTVRLWATSQTLGYISLAAQFIDTEWRVHRRMVNFMMVSSPHSENSLSEAISTSLSDWNMKDKLFTITLDNDPSSHDIYSANMINYLSNKKDNIMIKGQLFVVRCYAHILNTVAQDVIASVHSVIYHIRESIKFIKASSVHEDKFAEIALQL-EIPSAKTLCLDVTTQWNTTYLMLLAALDYQQVFASLETCDGDYNEAPSTEDWKKVEAACSYLSLLYDSAHNIMAAPNPTSNIFFHEAWKLQSELSNAIAHEDPIFRSTAKIMHE 543          

HSP 2 Score: 73.1738 bits (178), Expect = 2.993e-12
Identity = 39/101 (38.61%), Postives = 60/101 (59.41%), Query Frame = 1
Query: 1234 TQLDIYLDEPTLDLDFTEHMDILQWWKNNSQRFPDLSLMARDFLSIPITTVASESTF----NIGSCILNKYRNRLLPENVEAIICVSSWKYGFNPGNSFNP 1524
            ++L+ YL+E  +     +  +IL+WWK N+ +FP LS MARD L+IP++ V+S S+       GS +L+ YR+ L PE VEA+ C   W   + P  +  P
Sbjct:  646 SELEQYLEEALMPR--IQDFEILEWWKLNTIKFPTLSKMARDVLAIPMSMVSSGSSIFSATATGSQMLDDYRSSLRPETVEALFCAKDW-LQYPPATTEAP 743          
BLAST of rna-KK1_036686 vs. DB:Swiss
Match: RSLE1_ORYSJ (Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0239150 PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 1.711e-67
Identity = 137/421 (32.54%), Postives = 214/421 (50.83%), Query Frame = 1
Query:   19 GKERAKCNGCGKT--YVVGGKAYGTSHLNRHIP--KCEKRKYEDMSQMILNMQG-------------KLKSR-------KIDQMIFRELYCHLMIRHGFPFNFIESPVFKALITYLNPDENTFSKNTFKVDMWRIFIRDKARLKSELATIPNKICLTSDLWKSCNTEGFISLTTHYVDLNWKSNSKILNFHHMPPPHTGFELSKKIGDFLQDWGIEKKNFSITLDN-VSANDXXXXXXXXXXXXXXGLICDGEFFHVRCCAHVLNLIVQEGLKVLDGTLDQIRTSIKYLRGSESRMIKFKKCLKKFSDINSSSALCLDVPTRWNSTFLMLRSALKYQRVFGSLHLVDENYKYCPSDEEWERATKICKFLQPFYEITTLISGTSYPTSNLYFLQVWKIQCLLMGSVTGEDKVVRDMELKMHK 1206
            G  RA C  C +T  Y  G K  GTSHL RHI    C K K ++   ++    G             K + R         DQ         ++I H +P + ++ P F   I  L P        T + +++ ++ ++K  L     T+P +I L   LW +  T G++SL   ++D  WK + ++LNF  +  PH+   LS+ I   L DW ++ K F+ITLDN  S++D+    L+  L  +  L+  G+ F VRC AH+LN + Q+ +  + G +  IR SIK+++ S S   KF +   +  +I S+  LCLDV T+WN+T+LML +AL Y++ F +L   D+NY   PS E+W++    C +L+  Y+    I   + PTSNL+F + WK+Q  L  +   ED V   +   MH+
Sbjct:   83 GATRACCKLCKQTFAYSSGSKIAGTSHLKRHITLGSCPKIKNQEHKLLLTPAGGTDNDGEGTVERPSKRRYRYTGYANAAFDQERSCSYLAKMIILHDYPLHIVQQPAFTTFIDSLQPRFRVVDVETMEWEVYAVYQKEKENLMQAFNTMPGRISLAIGLWTTSQTLGYVSLAGQFIDSEWKMHRRMLNFMMVSSPHSENALSEAISTSLSDWNMKDKLFTITLDNDCSSHDIYSANLRDYLSNKNNLMLKGQLFVVRCYAHILNAVAQDVIASIHGVIYNIRESIKFIKASPSCEEKFAEIALQL-EIPSTKTLCLDVTTQWNTTYLMLLAALDYKQAFSTLETSDDNYNEAPSAEDWKKVEAACNYLKLLYDSAHSIMAAANPTSNLFFHEAWKLQLELSNATGREDPVFSSIAKDMHE 502          

HSP 2 Score: 70.4774 bits (171), Expect = 2.122e-11
Identity = 44/114 (38.60%), Postives = 68/114 (59.65%), Query Frame = 1
Query: 1159 TGEDKVVRDMELKMHKLQVA-NKSGRTQLDIYLDEPTLDLDFTEHMDILQWWKNNSQRFPDLSLMARDFLSIPITTVAS-ESTFNIGSC--ILNKYRNRLLPENVEAIICVSSW 1488
            TG+  V  DM L     ++A ++  +++L+ YLDE        +  DIL WWK N+ ++P LS MARD L+IP++ V+S  S F+ G+   +L+ YR+   PE VEA++C   W
Sbjct:  594 TGDGLVDFDMYLS----EIATSQPTKSELEQYLDESLTPR--IQEFDILNWWKLNTLKYPTLSKMARDILAIPMSMVSSGNSIFSAGTGTRMLDDYRSSSRPEIVEALVCAKDW 701          
BLAST of rna-KK1_036686 vs. DB:Swiss
Match: TRA1_MAIZE (Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 3.684e-57
Identity = 113/342 (33.04%), Postives = 188/342 (54.97%), Query Frame = 1
Query:  184 KIDQMIFRELYCHLMIRHGFPFNFIESPVFKALITYLNPDENTFSKNTFKVDMWRIFIRDKARLKSELATIPNKICLTSDLWKSCNTEGFISLTTHYVDLNWKSNSKILNFHHMPPPHTGFELSKKIGDFLQDWGIEKKNFSITLDNVSANDXXXXXXXXX-XXXXXGLICDGEFFHVRCCAHVLNLIVQEGLKVLDGTLDQIRTSIKYLRGSESRMIKFKKCLKKFSDINSSSALCLDVPTRWNSTFLMLRSALKYQRVFGSLHLVDENY--KYCPSDEEWERATKICKFLQPFYEITTLISGTSYPTSNLYFLQVWKIQCLLMGSVTGEDKVVRDMELKM 1200
            K D+++  +     +I H +PFN +E   F   +  L P     S+ T +  +  +++ +K +L  +L  + ++   T D+W SC  + ++ +T H++D +W    +I+ F H+   HTG  LS+     +  W IEKK F+++LDN SAN+V    + +        L+CDG FFHVRC  H+LNL+ ++GL V+ GT+++I+  +  ++ S  +  +  KC  +  D++ S  +  DV TRWNST+LMLR AL Y+     L   D       CP  EEW+ A  + K L+ F+++T L+SGT Y T+NL++    +I+ L+      E  V+R M + M
Sbjct:  222 KYDEVVSLKKLHLAIIMHEYPFNIVEHEYFVEFVKSLRPHFPIKSRVTARKYIMDLYLEEKEKLYGKLKDVQSRFSTTMDMWTSCQNKSYMCVTIHWIDDDWCLQKRIVGFFHVEGRHTGQRLSQTFTAIMVKWNIEKKLFALSLDNASANEVAVHDIIEDLQDTDSNLVCDGAFFHVRCACHILNLVAKDGLAVIAGTIEKIKAIVLAVKSSPLQWEELMKCASE-CDLDKSKGISYDVSTRWNSTYLMLRDALYYKPALIRLKTSDPRRYDAICPKAEEWKMALTLFKCLKKFFDLTELLSGTQYSTANLFYKGFCEIKDLIDQWCVHEKFVIRRMAVAM 562          

HSP 2 Score: 90.5077 bits (223), Expect = 1.008e-17
Identity = 43/112 (38.39%), Postives = 66/112 (58.93%), Query Frame = 1
Query: 1198 MHKLQVANKSGRTQLDIYLDEPTLDLDFTEHMDILQWWKNNSQRFPDLSLMARDFLSIPITTVASESTFNIGSCILNKYRNRLLPENVEAIICVSSWKYGFNPGNSFNPILI 1533
            +H+L+  ++    +LD Y+ EP L    +   DIL WW+     +P L+ +ARD L+I ++TVASES F+ G  +++ YRNRL  E VEA+IC   W      G ++ P +I
Sbjct:  656 LHELKDYDQVESNELDKYMSEPLLK--HSGQFDILSWWRGRVAEYPILTQIARDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWVAASRKGATYFPTMI 765          
BLAST of rna-KK1_036686 vs. DB:Swiss
Match: RSLE4_ORYSJ (Zinc finger BED domain-containing protein RICESLEEPER 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0518400 PE=2 SV=3)

HSP 1 Score: 196.823 bits (499), Expect = 7.202e-54
Identity = 118/403 (29.28%), Postives = 207/403 (51.36%), Query Frame = 1
Query:   16 DGKERAKCNGCGKT--YVVGGKAYGTSHLNRHIPK-CEKRKYEDMSQMILNMQGKLKSRKIDQMIFRELYCHLMIRHGFPFNFIESPVFKALITYLNPDENTFSKNTFKVDMWRIFIRDKARLKSELATIPNKICLTSDLWKSCNTEGFISLTTHYVDLNWKSNSKILNFHHMPPPHTGFELSKKIGDFLQDWGIEKKNFSITLD-NVSANDXXXXXXXXXXXXXXGLICDGEFFHVRCCAHVLNLIVQEGLKVLDGTLDQIRTSIKYLRGSESRMIKFKKCLKKFSDINSSSALCLDVPTRWNSTFLMLRSALKYQRVFGSLHLVDENYKYCPSDEEWERATKICKFLQPFYEITTLISGT--SYPTSNLYFLQVWKIQCLLMGSVTGEDKVVRDMELKMHK 1206
            DG +RA C  C ++  Y  G K  GTSHL RHI + C   K    S+         ++   DQ         ++I + +P + ++ P F + +  + P+       T + +++ I++++K  L+  LA IP +I LT     +  +  +ISL   ++D  W+ + ++L     P P +   +S+ I   L DW ++ K F+ITL+ + S++D+    L+  L     L+  G+ F VRC A++LN +    L  +   +  IR SIK+++  ++   KF +   +   I S+++LCLDV + WN+T+LML +AL Y++VF  L    +NY   PS E+W++    C FL+  Y  T  I     ++ T+N++F   W +Q  L   +   D V+R + + +H+
Sbjct:   70 DGCKRASCIHCNQSLAYSSGSKNSGTSHLTRHIAEWCRVLKDRQKSRRYTTYNSSNENASFDQERSCLRLAKMIILNDYPLHIVQQPAFLSFVDSVQPNFKMVDIGTIETEVYAIYLKEKDHLQQALANIPGRISLTVGSLTTNQSIRYISLAAQFIDSEWRLHRRVLKVMMAPWPQSENAVSRAIIKCLSDWNMQDKLFTITLEHDCSSHDIYSANLRNHLSGDNILMLKGQTFAVRCYANILNAVAHGVLASVHNVIYLIRESIKFIKADDAHENKFAEIAVELK-ITSNNSLCLDVTSEWNTTYLMLLAALDYRQVFTLLESYYDNYGTAPSTEDWKKVEAACGFLKLLYAFTLNIMSAEGNHQTANMFFHDAWVLQLELQNGMAHGDDVIRGIVIGIHE 471          

HSP 2 Score: 69.3218 bits (168), Expect = 4.983e-11
Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 1282 TEHMDILQWWKNNSQRFPDLSLMARDFLSIPITTVASESTFNI---GSCILNKYRNRLLPENVEAIICVSSW 1488
            T   D+L+WW++N+ ++P LS MARD L+IP++TV   S+  +   GS  L+ YR+ L PE VEA++C   W
Sbjct:  608 TPDFDVLKWWQDNTLKYPTLSRMARDVLAIPMSTVGVGSSVFLPDNGSRSLDDYRSSLRPELVEALLCAKDW 679          
BLAST of rna-KK1_036686 vs. DB:Swiss
Match: DSLE_ARATH (Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=3702 GN=HAT PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.934e-53
Identity = 118/420 (28.10%), Postives = 199/420 (47.38%), Query Frame = 1
Query:   28 RAKCNGCGKT--YVVGGKAYGTSHLNRHI-------------------------PKCEKRKYEDMSQMILNMQGKLKSRKIDQMIFRELYCHLMIRHGFPFNFIESPVFKALITYLNPDENTFSKNTFKVDMWRIFIRDKARLKSELATIPNKICLTSDLWKSCNTEGFISLTTHYVDLNWKSNSKILNFHHMPPPHTGFELSKKIGDFLQDWGIEKKNFSITLDNVSANDXXXXXXXXXXXXXXGLICDGEFFHVRCCAHVLNLIVQEGLKVLDGTLDQIRTSIKYLRGSESRMIKFKKCLKKFSDINSSSALCLDVPTRWNSTFLMLRSALKYQRVFGSLHLVDENYKYCPSDEEWERATKICKFLQPFYEITTLISGTSYPTSNLYFLQVWKIQCLLMGSVTGEDKVVRDMELKMHK 1206
            RA C GC ++  Y  G K  GTSHL RHI                         PK +  +    SQ   +        K  Q I +     ++I H +P + ++ P F + +  + P  +  S N  + D    ++ +K  +   L  IP + CLT D W S  T G++ +T HY+D +WK   K+LN      P     LS  + + + +WG+E K F++T ++ ++N  ++    +  +   G++ DG+     C A     + ++ L+     +  IR S+K+++ SES   +F + LK+   + S   L LD  T+WN+T++ML +A + + VF  L   D +YK  PS E+W     +C FL+P +E  + +  T  P++  +F +VWK Q  L  ++ GED  V  +   M +
Sbjct:   85 RAFCKGCNQSFAYSNGNKVAGTSHLKRHIFKGTCPALIHTHDNDNNPLMSTPYTPKTDTPRRRYRSQNNASPYVAFNQDKCRQEIAK-----MIIMHDYPLHMVQHPGFVSFVQSIQPHFDAVSFNNVQGDCVATYLAEKQNVMKSLEGIPGRFCLTLDFWTSKLTLGYVFITAHYIDSDWKIQKKLLNVLMESYPEADEALSLAVANCVSEWGLEGKLFNVTFNHPASNSAVENIRPQLCIKNPGIL-DGQLVIGNCVARTFGSLAKDVLEKGKDVIKNIRDSVKHVKTSESHEERFTE-LKEQLQVPSEKVLSLDDQTQWNTTYMMLVAASELKEVFSCLDTADPDYKKPPSAEDWRHVEALCTFLKPLFEAVSTLQSTGNPSAVTFFHEVWKTQSDLSRAIAGEDPFVTGIAKTMQE 497          

HSP 2 Score: 80.4925 bits (197), Expect = 1.535e-14
Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = 1
Query: 1207 LQVANKSGRTQLDIYLDEPTLDLDFTEHMDILQWWKNNSQRFPDLSLMARDFLSIPITTVASESTFNIGSCILNKYRNRLLPENVEAIICVSSW 1488
            ++   ++ +++LD YLDE TL L   +  D+L WWK N  ++P LS MARD LSIP++  A +  F++    +++Y+  L PE VEA+IC   W
Sbjct:  582 METTGQNLKSELDQYLDE-TL-LPRVQEFDVLDWWKQNKLKYPTLSKMARDILSIPVSAAAFDYVFDMEPREMDEYKTSLRPETVEALICAREW 673          
BLAST of rna-KK1_036686 vs. DB:Swiss
Match: TRAC9_MAIZE (Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.667e-49
Identity = 125/434 (28.80%), Postives = 207/434 (47.70%), Query Frame = 1
Query:   16 DGKERAK----CN--GCGKTYVVGGKAYGTSHLNRHIPKCEKRKYEDMSQMILNMQGK----LKSRKIDQMIFRELYCHLMIRHGFPFNFIESPVFKALITYLNPDENTFSKNTFKVDMWRIFIRDKARLKSELATIPNKICLTSDLWKSCNTEGFISLTTHYVDLNWKSNSKILNFHHMPPPHTGFELSKKIGDFLQDWGIEKKNFSITLDNVSANDXXXX-XXXXXXXXXXGLICDGEFFHVRCCAHVLNLIVQEGLKVLDGTLDQIRTSIKYLRGSESRMIKFKKCLKKFSDINSSSALCLDVPTRWNSTFLMLRSALKYQRVFGSLHLVD------------ENYKYC----------------PSDEEWERATKICKFLQPFYEITTLISGTSYPTSNLYFLQVWKIQCLLMGSVTGEDKVVRDMELKM 1200
            DGK+  +    CN   C   Y   G  +GTS    H+          +        GK    ++  K D+++  +     +I H +PFN +E   F   +  L P     S+ T +  +  +++ +K +L  +L  + ++   T D+W SC  + ++ +T H++D +W    +I+ F H+   HTG  LS+     +  W IEKK F+++LDN SAN+V     ++        L+CDG FFHVRC  H+LNL+ ++GL V+ GT+++I+  +  ++ S  +  +  KC  +  D++ S  +  DV TRWNST+LMLR AL Y+     L   D             +YK+                 P    W      C  L+ F+++T L+SGT Y T+NL++    +I+ L+      E  V+R M + M
Sbjct:  102 DGKKYVQVWGHCNFPNCKAKYRAEGH-HGTSGFRNHLRTSHSLVKGQLCLKSEKDHGKDINLIEPYKYDEVVSLKKLHLAIIMHEYPFNIVEHEYFVEFVKSLRPHFPIKSRVTARKYIMDLYLEEKEKLYGKLKDVQSRFSTTMDMWTSCQNKSYMCVTIHWIDDDWCLQKRIVGFFHVEGRHTGQRLSQTFTAIMVKWNIEKKLFALSLDNASANEVAVHDIIEDLQDTDSNLVCDGAFFHVRCACHILNLVAKDGLAVIAGTIEKIKAIVLAVKSSPLQWEELMKCASE-CDLDKSKGISYDVSTRWNSTYLMLRDALYYKPALIRLKTSDPRRYVCLNCCTCHHYKFSINQMSIIVGTMQFVLKPRSGRWHLTLFKC--LKKFFDLTELLSGTQYSTANLFYKGFCEIKDLIDQWCCHEKFVIRRMAVAM 531          

HSP 2 Score: 84.7297 bits (208), Expect = 7.828e-16
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 1
Query: 1198 MHKLQVANKSGRTQLDIYLDEPTLDLDFTEHMDILQWWKNNSQRFPDLSLMARDFLSIPITTVASESTFNIGSCILNKYRNRLLPENVEAIICVSSWKYGFNPGN 1512
            +H+L+  ++    +LD Y+ EP L    +   DIL WW+     +P L+ +ARD L+I ++TVASES F+ G  +++ YRNRL  E VEA+IC   W      G 
Sbjct:  625 LHELKDYDQVESNELDKYMSEPLLK--HSGQFDILSWWRGRVAEYPILTQIARDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWVAASRKGE 727          
BLAST of rna-KK1_036686 vs. DB:Swiss
Match: ZBED4_HUMAN (Zinc finger BED domain-containing protein 4 OS=Homo sapiens OX=9606 GN=ZBED4 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 4.357e-12
Identity = 75/340 (22.06%), Postives = 153/340 (45.00%), Query Frame = 1
Query:  244 PFNFIESPVFKALITYLNPDENTFSKNTF-KVDMWRIFIRDKARLKSELATIPNKIC-LTSDLWKSCNTEGFISLTTHYVDLNWKSN--------SKILNFHHMPPPHTGFELSKKIGDFLQDWGIEKK-NFSITL-DNVSANDXXXXXXXXXXXXXXGLICDGEFFHVRCCAHVLNLIVQEGLKVLDGTLDQIRTSIKYLRGSESRMIKFKKCLKKFSDINSSSA-----LCLDVPTRWNSTFLMLRSALKYQRVFGSLHLVDENYKYCPSDEEWERATKICKFLQPF----YEITTLISGTSYPTSNLYFLQVWKIQCLLMGSVTGEDKVVRDMELKM 1200
            P++F+++  F  L+ YL P  +  + + F +  +  ++   K  + S L    + +   TS +W S  T  +++LT H+V     +         S +L+   +   ++G  + K++  + + W         IT+ DN S                   + +GE   V+C +H +NLIV E +K    +   ++  +   R    R+ +  K  +K +++    A     L  DVP++W+++F ML   ++ +R    +  V+ N++   S ++WE    +C+ L+PF     E++T +S  S     ++ L   K++ +L     G D ++R ++  M
Sbjct:  672 PYSFVDNVGFNRLLEYLKPQYSLPAPSYFSRTAIPGMYDNVKQIIMSHLKEAESGVIHFTSGIWMSNQTREYLTLTAHWVSFESPARPRCDDHHCSALLDVSQVDCDYSGNSIQKQLECWWEAWVTSTGLQVGITVTDNASIGKT---------------LNEGEHSSVQCFSHTVNLIVSEAIK----SQRMVQNLLSLARKICERVHRSPKAKEKLAELQREYALPQHHLIQDVPSKWSTSFHMLERLIEQKRAINEMS-VECNFRELISCDQWEVMQSVCRALKPFEAASREMSTQMSTLSQVIPMVHILN-RKVE-MLFEETMGIDTMLRSLKEAM 989          
BLAST of rna-KK1_036686 vs. DB:Swiss
Match: ZBED1_HUMAN (Zinc finger BED domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ZBED1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.508e-11
Identity = 83/389 (21.34%), Postives = 156/389 (40.10%), Query Frame = 1
Query:  241 FPFNFIESPVFKALITYLNPDENTFSKNTFKVD-MWRIFIRDKARLKSELATIPNKICLTSDLWKSCN-TEGFISLTTHYVDLNWKS----NSKILNFHHMPPPHTGFELSKKIGDFLQDWGIEKKNFSITL----DNVSANDXXXXXXXXXXXXXXGLICDGEFFHVRCCAHVLNLIVQEGLKV--LDGTLDQIRTSIKYLRGSESRMIKFKKCLKKFSDINSSSALCLDVPTR---WNSTFLMLRSALKYQRVFGSLHLVDEN-YKYCPSDEEWERATKICKFLQPFYEITTLISGTSYPTSNLYFLQVWKIQCLLMGSVTGEDKVVRDMELKMHKLQVANKSGRTQLDIYLDEPTLDLDFTEHMDILQWWKNNSQRFPDLSLMARD 1359
            +P + ++ P FK L+   +P     S+       +   +   +  +  ELA       +++D+W+S N    +++L  H++ L   +     S+ L    +P  +T   +++ + +   +WGI  K F  T     D V A  +L                     H+ C  H  N  +Q+  ++  L   L + R  ++Y + S   M    +  K+      + A C+ V  R   W ST  ML+   + Q V   + + D N +       EW     + + LQPF ++  ++S + YPT ++      K    ++ + T   K     EL M K  +A +  +T    Y + P +D+     +++  +     +R P LS   R 
Sbjct:  139 YPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAVREVILKELAEA-TWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPEENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVA-----------------VHMPCLGHTFNAGIQQAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQ-----QNVAHCMLVSNRVSWWGSTLAMLQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTISMV-----KPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKT----YQETPEIDM----FLNVATFLDPRYKRLPFLSAFERQ 491          
BLAST of rna-KK1_036686 vs. DB:Swiss
Match: ZBED4_MOUSE (Zinc finger BED domain-containing protein 4 OS=Mus musculus OX=10090 GN=Zbed4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.382e-10
Identity = 91/441 (20.63%), Postives = 185/441 (41.95%), Query Frame = 1
Query:   37 CNGCGKTYVVGGKA--YGTSHLNRHIPKCEKRKYE-DMSQMILNMQGKLK--------------------------SRKIDQMIFRELYCHLMIRHGFPFNFIESPVFKALITYLNPDENTFSKNTF-KVDMWRIFIRDKARLKSELATIPNKIC-LTSDLWKSCNTEGFISLTTHYVDLNWKSN--------SKILNFHHMPPPHTGFELSKKIGDFLQDW----GIEKKNFSITL-DNVSANDXXXXXXXXXXXXXXGLICDGEFFHVRCCAHVLNLIVQEGLKVLDGTLDQIRTSIKYLRGSESRMIKFKKCLKKFSDIN-----SSSALCLDVPTRWNSTFLMLRSALKYQRVFGSLHLVDENYKYCPSDEEWERATKICKFLQPF----YEITTLISGTSYPTSNLYFLQVWKIQCLLMGSVTGEDKVVRDMELKM 1200
            C  CG+T   G K    GTS L RH+ +      + D+S+  L+    ++                          ++KI  +I   +   L      P++ +++  F  L+ YL P  +  S + F +  +  ++   K  + S L    + +   TS +W S  T  +++LT H+V               S +L+   +   ++G  + K++  + + W    G++     IT+ DN S                  ++ +GE   V+C +H +NLIV E +K    +   ++  +   R    R+ +  +  +K +++          L  DVP++W+++F ML   ++ +R    +  ++ N++   S ++WE    +C  L+PF     E++  +S  S     ++ L   K++ +L G   G D +++ ++  M
Sbjct:  578 CLHCGRTISRGKKPTNLGTSCLLRHLQRFHGHVLKNDVSEATLSRSPGIRRPLGIELSGPSSFRDSTEKFYDSHPVAKKITSLIAEMIALDLQ-----PYSLVDNVGFNRLLEYLKPQYSLPSPSYFSRTAIPGMYDNVKQIIMSHLKEAESGVVHFTSGIWMSSQTREYLTLTAHWVTFASAVRPHCEDHHCSALLDVSQIDCDYSGNSIQKQLECWWEAWVTSIGLQ---IGITVTDNPSIGK---------------MLSEGEHSSVQCFSHTVNLIVSEAIK----SQRMVQNLLSIARKLCERVHRSPRAREKLAELQKEYELPQHQLIQDVPSKWSTSFHMLERLIEQKRAVNEVS-IECNFRELISCDQWEVMQSVCHVLRPFDAASREMSAHMSTLSQVIPMIHILS-RKVE-MLFGETMGIDTMLKSLKEAM 988          
The following BLAST results are available for this feature:
BLAST of rna-KK1_036686 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RSLE2_ORYSJ8.884e-6932.07Zinc finger BED domain-containing protein RICESLEE... [more]
RSLE3_ORYSJ1.515e-6731.75Zinc finger BED domain-containing protein RICESLEE... [more]
RSLE1_ORYSJ1.711e-6732.54Zinc finger BED domain-containing protein RICESLEE... [more]
TRA1_MAIZE3.684e-5733.04Putative AC transposase OS=Zea mays OX=4577 PE=2 S... [more]
RSLE4_ORYSJ7.202e-5429.28Zinc finger BED domain-containing protein RICESLEE... [more]
DSLE_ARATH5.934e-5328.10Zinc finger BED domain-containing protein DAYSLEEP... [more]
TRAC9_MAIZE1.667e-4928.80Putative AC9 transposase OS=Zea mays OX=4577 PE=4 ... [more]
ZBED4_HUMAN4.357e-1222.06Zinc finger BED domain-containing protein 4 OS=Hom... [more]
ZBED1_HUMAN2.508e-1121.34Zinc finger BED domain-containing protein 1 OS=Hom... [more]
ZBED4_MOUSE1.382e-1020.63Zinc finger BED domain-containing protein 4 OS=Mus... [more]
back to top
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003656Zinc finger, BED-typeSMARTSM00614bed5coord: 2..42
e-value: 0.0047
score: 25.0
IPR008906HAT, C-terminal dimerisation domainPFAMPF05699Dimer_Tnp_hATcoord: 414..496
e-value: 1.5E-27
score: 95.2
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 124..496

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_036686_Cc_Asha_v1.0 ID=rna-KK1_036686_Cc_Asha_v1.0; Name=rna-KK1_036686; organism=Cajanus cajan; type=mRNA; length=1614bp
ATGGGAAAGGGTGATGATGGAAAAGAAAGGGCAAAGTGTAATGGTTGTGG
CAAAACTTATGTAGTTGGTGGCAAAGCATATGGGACTTCTCATTTAAATC
GTCATATTCCCAAATGTGAGAAAAGAAAATATGAAGATATGAGTCAAATG
ATCTTAAACATGCAAGGAAAGTTGAAATCAAGAAAGATAGATCAAATGAT
TTTTCGTGAGTTGTATTGTCATCTAATGATAAGACATGGTTTTCCCTTCA
ATTTTATTGAGAGTCCTGTGTTTAAGGCTTTGATAACGTATTTGAATCCT
GATGAAAATACATTTTCTAAAAATACTTTTAAGGTTGATATGTGGAGAAT
TTTTATTAGAGACAAAGCAAGGCTTAAAAGTGAGTTGGCTACCATTCCTA
ATAAAATTTGTTTAACTTCTGATTTATGGAAATCTTGTAATACTGAGGGT
TTCATTAGTTTAACTACTCATTATGTTGATCTAAATTGGAAGTCAAATAG
CAAGATTCTTAACTTTCATCATATGCCTCCCCCTCACACTGGTTTTGAGT
TATCTAAAAAGATTGGGGACTTTTTACAAGATTGGGGAATAGAGAAAAAA
AATTTCTCTATCACTTTGGATAATGTTTCTGCTAATGATGTTCTACAACA
GACGTTAAAAAAACAACTTGTTTTGCAAAAAGGGTTGATATGTGATGGTG
AATTTTTTCATGTGCGTTGTTGTGCTCATGTTTTAAATTTGATTGTTCAA
GAAGGATTAAAGGTACTTGATGGCACTTTGGATCAAATTAGAACTAGCAT
CAAATATCTAAGGGGTTCAGAGAGTAGAATGATCAAATTCAAAAAATGTC
TTAAAAAATTTAGTGACATTAATTCATCAAGTGCATTGTGTCTAGATGTA
CCTACAAGATGGAATTCAACTTTTTTGATGCTTCGAAGTGCTCTTAAATA
TCAACGTGTTTTTGGAAGTCTGCATTTGGTTGATGAAAATTACAAATATT
GTCCTTCAGATGAAGAATGGGAAAGAGCAACAAAGATTTGTAAATTCTTG
CAACCATTTTATGAAATTACAACATTAATTTCTGGCACAAGTTATCCTAC
TTCCAACTTGTATTTTTTACAAGTTTGGAAAATCCAATGCCTTTTAATGG
GAAGTGTAACAGGTGAAGATAAAGTTGTAAGAGATATGGAATTAAAAATG
CACAAGCTTCAAGTTGCTAATAAATCTGGAAGGACTCAACTTGATATATA
TTTAGATGAACCCACTTTAGATCTTGATTTTACGGAGCATATGGATATAC
TACAATGGTGGAAGAATAATAGTCAACGTTTTCCGGATCTCTCCTTAATG
GCTAGGGACTTTTTAAGCATCCCTATTACCACAGTTGCATCTGAATCTAC
ATTTAATATTGGTTCTTGTATCCTTAACAAGTATAGAAACCGTCTCTTGC
CTGAAAATGTAGAAGCAATTATTTGTGTTTCTAGTTGGAAGTATGGTTTT
AATCCGGGTAATTCATTTAATCCAATTTTAATTCTTAAATGTTATTATTT
ATATAATTTTGATATTCATTTCAACATCCTTACTTTAATTTTTTTTATGT
TTAATTTATTTTGA
back to top

protein sequence of rna-KK1_036686_Cc_Asha_v1.0

>rna-KK1_036686_Cc_Asha_v1.0 ID=rna-KK1_036686_Cc_Asha_v1.0; Name=rna-KK1_036686_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=537bp
MGKGDDGKERAKCNGCGKTYVVGGKAYGTSHLNRHIPKCEKRKYEDMSQM
ILNMQGKLKSRKIDQMIFRELYCHLMIRHGFPFNFIESPVFKALITYLNP
DENTFSKNTFKVDMWRIFIRDKARLKSELATIPNKICLTSDLWKSCNTEG
FISLTTHYVDLNWKSNSKILNFHHMPPPHTGFELSKKIGDFLQDWGIEKK
NFSITLDNVSANDVLQQTLKKQLVLQKGLICDGEFFHVRCCAHVLNLIVQ
EGLKVLDGTLDQIRTSIKYLRGSESRMIKFKKCLKKFSDINSSSALCLDV
PTRWNSTFLMLRSALKYQRVFGSLHLVDENYKYCPSDEEWERATKICKFL
QPFYEITTLISGTSYPTSNLYFLQVWKIQCLLMGSVTGEDKVVRDMELKM
HKLQVANKSGRTQLDIYLDEPTLDLDFTEHMDILQWWKNNSQRFPDLSLM
ARDFLSIPITTVASESTFNIGSCILNKYRNRLLPENVEAIICVSSWKYGF
NPGNSFNPILILKCYYLYNFDIHFNILTLIFFMFNLF
back to top

mRNA from alignment at Scaffold128880-KQ483745.1:103004..104997+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_036686_Cc_Asha_v1.0 ID=rna-KK1_036686_Cc_Asha_v1.0; Name=rna-KK1_036686; organism=Cajanus cajan; type=mRNA; length=1994bp; location=Sequence derived from: Scaffold128880-KQ483745.1:103004..104997+ (Cajanus cajan
ATGGGAAAGGGTGATGATGGAAAAGAAAGGGCAAAGTGTAATGGTTGTGG CAAAACTTATGTAGTTGGTGGCAAAGCATATGGGACTTCTCATTTAAATC GTCATATTCCCAAatgtgagaaaagaaaatatgaagataTGAGTCAAATG ATCTTAAACATGCAAGGAAAGTTGAAATCAAGAAAGATAGATCAAATGAT TTTTCGTGAGTTGTATTGTCATCTAATGATAAGACATGGTTTTCCCTTCA ATTTTATTGAGAGTCCTGTGTTTAAGGCTTTGATAACGTATTTGAATCCT GATGAAAAtacattttctaaaaatacttttaaggtTGATATGTGGAGAAT TTTTATTAGAGACAAAGCAAGGCTTAAAAGTGAGTTGGCTACCATtccta ataaaatttgtttaacttcTGATTTATGGAAATCTTGTAATACTGAGGGT TTCATTAGTTTAACTACTCATTATGTTGATCTAAATTGGAAGTCAAATAG CAAGATTCTTAACTTTCATCATATGCCTCCCCCTCACACTGGTTTTGAGT TATCTAAAAAGATTGGGGACTTTTTACAAGATTGgggaatagagaaaaaa aatttctctatcACTTTGGATAATGTTTCTGCTAATGATGTTCTACAACA GACGTTAAAAAAACAACTTGTTTTGCAAAAAGGGTTGATATGTGATGGTG AATTTTTTCATGTGCGTTGTTGTgctcatgttttaaatttgattgttCAA GAAGGATTAAAGGTACTTGATGGCACTTTGGATCAAATTAGAACTAGCAT CAAATATCTAAGGGGTTCAGAGAGTAGAAtgatcaaattcaaaaaatgtc ttaaaaaatttagtgacaTTAATTCATCAAGTGCATTGTGTCTAGATGTA CCTACAAGATGGAATTCAACTTTTTTGATGCTTCGAAGTGCTCTTAAATA TCAACGTGTTTTTGGAAGTCTGCATTTGGTtgatgaaaattacaaatatt gtcCTTCAGATGAAGAATGGGAAAGAGCAACAAAGATTTGTAAATTCTTG CAACCATTTTATGAAATTACAACATTAATTTCTGGCACAAGTTATCCTAC TTCCaacttgtattttttacaagtttggAAAATCCAATGCCTTTTAATGG GAAGTGTAACAGGTGAAGATAAAGTTGTAAGAGATATGACTGGATTGATA TGATGGAGAAATTTGAAAAGTATTGGGATGAGTATAGTGTTGTGCTTGCA TTTGGTGCAATTTTAGACCCAAGGATGAAGTTAGAAACATTGGGTTATTG CTATGAAAGAATTGATTTGCTTACTTGGGAAATAAAATTGGAGAAAGTCA AGGAAAAAGTTTACATGCTTTTCTCCCATTATTTTAGCCATGGTTCTAAA TTAAATGCTCAAAATCTAAAGCGTAAGGatgtttcttcttcatcttcgaT CAATAGCAAACCAAACCTTTTTGATgtaagttatttactttaatttattg aaatcatGATTTCcttcatataaatattatgtatatttctaacttatttt tttttcttatcatataAGGAATTAAAAATGCACAAGCTTCAAGTTGCTAA TAAATCTGGAAGGACTCAActtgatatatatttagatGAACCCACTTTAG ATCTTGATTTTACGGAGCATATGGATATACTACAATGGTGGAAGAATAAT AGTCAACGTTTTCCGGATCTCTCCTTAATGGCTAGGGACTTTTTAAGCAT CCCTATTACCACAGTTGCATCTGAATCTACATTTAATATTGGTTCTTGTA TCCTTAACAAGTATAGAAACCGTCTCTTGCCTGAAAATGTAGAAGCAATT ATTTGTGTTTCTAGTTGGAAGTATGGTTTTAATCCGGGTAATTCATTTAA tccaattttaattcttaaatgttattatttatataattttgatattcatT TCAACAtccttactttaattttttttatgtttaatttattttga
back to top

Coding sequence (CDS) from alignment at Scaffold128880-KQ483745.1:103004..104997+

>rna-KK1_036686_Cc_Asha_v1.0 ID=rna-KK1_036686_Cc_Asha_v1.0; Name=rna-KK1_036686; organism=Cajanus cajan; type=CDS; length=3228bp; location=Sequence derived from: Scaffold128880-KQ483745.1:103004..104997+ (Cajanus cajan
ATGGGAAAGGGTGATGATGGAAAAGAAAGGGCAAAGTGTAATGGTTGTGG
CAAAACTTATGTAGTTGGTGGCAAAGCATATGGGACTTCTCATTTAAATC
GTCATATTCCCAAatgtgagaaaagaaaatatgaagataTGAGTCAAATG
ATCTTAAACATGCAAGGAAAGTTGAAATCAAGAAAGATAGATCAAATGAT
TTTTCGTGAGTTGTATTGTCATCTAATGATAAGACATGGTTTTCCCTTCA
ATTTTATTGAGAGTCCTGTGTTTAAGGCTTTGATAACGTATTTGAATCCT
GATGAAAAtacattttctaaaaatacttttaaggtTGATATGTGGAGAAT
TTTTATTAGAGACAAAGCAAGGCTTAAAAGTGAGTTGGCTACCATtccta
ataaaatttgtttaacttcTGATTTATGGAAATCTTGTAATACTGAGGGT
TTCATTAGTTTAACTACTCATTATGTTGATCTAAATTGGAAGTCAAATAG
CAAGATTCTTAACTTTCATCATATGCCTCCCCCTCACACTGGTTTTGAGT
TATCTAAAAAGATTGGGGACTTTTTACAAGATTGgggaatagagaaaaaa
aatttctctatcACTTTGGATAATGTTTCTGCTAATGATGTTCTACAACA
GACGTTAAAAAAACAACTTGTTTTGCAAAAAGGGTTGATATGTGATGGTG
AATTTTTTCATGTGCGTTGTTGTgctcatgttttaaatttgattgttCAA
GAAGGATTAAAGGTACTTGATGGCACTTTGGATCAAATTAGAACTAGCAT
CAAATATCTAAGGGGTTCAGAGAGTAGAAtgatcaaattcaaaaaatgtc
ttaaaaaatttagtgacaTTAATTCATCAAGTGCATTGTGTCTAGATGTA
CCTACAAGATGGAATTCAACTTTTTTGATGCTTCGAAGTGCTCTTAAATA
TCAACGTGTTTTTGGAAGTCTGCATTTGGTtgatgaaaattacaaatatt
gtcCTTCAGATGAAGAATGGGAAAGAGCAACAAAGATTTGTAAATTCTTG
CAACCATTTTATGAAATTACAACATTAATTTCTGGCACAAGTTATCCTAC
TTCCaacttgtattttttacaagtttggAAAATCCAATGCCTTTTAATGG
GAAGTGTAACAGGTGAAGATAAAGTTGTAAGAGATATGATGGGAAAGGGT
GATGATGGAAAAGAAAGGGCAAAGTGTAATGGTTGTGGCAAAACTTATGT
AGTTGGTGGCAAAGCATATGGGACTTCTCATTTAAATCGTCATATTCCCA
AatgtgagaaaagaaaatatgaagataTGAGTCAAATGATCTTAAACATG
CAAGGAAAGTTGAAATCAAGAAAGATAGATCAAATGATTTTTCGTGAGTT
GTATTGTCATCTAATGATAAGACATGGTTTTCCCTTCAATTTTATTGAGA
GTCCTGTGTTTAAGGCTTTGATAACGTATTTGAATCCTGATGAAAAtaca
ttttctaaaaatacttttaaggtTGATATGTGGAGAATTTTTATTAGAGA
CAAAGCAAGGCTTAAAAGTGAGTTGGCTACCATtcctaataaaatttgtt
taacttcTGATTTATGGAAATCTTGTAATACTGAGGGTTTCATTAGTTTA
ACTACTCATTATGTTGATCTAAATTGGAAGTCAAATAGCAAGATTCTTAA
CTTTCATCATATGCCTCCCCCTCACACTGGTTTTGAGTTATCTAAAAAGA
TTGGGGACTTTTTACAAGATTGgggaatagagaaaaaaaatttctctatc
ACTTTGGATAATGTTTCTGCTAATGATGTTCTACAACAGACGTTAAAAAA
ACAACTTGTTTTGCAAAAAGGGTTGATATGTGATGGTGAATTTTTTCATG
TGCGTTGTTGTgctcatgttttaaatttgattgttCAAGAAGGATTAAAG
GTACTTGATGGCACTTTGGATCAAATTAGAACTAGCATCAAATATCTAAG
GGGTTCAGAGAGTAGAAtgatcaaattcaaaaaatgtcttaaaaaattta
gtgacaTTAATTCATCAAGTGCATTGTGTCTAGATGTACCTACAAGATGG
AATTCAACTTTTTTGATGCTTCGAAGTGCTCTTAAATATCAACGTGTTTT
TGGAAGTCTGCATTTGGTtgatgaaaattacaaatattgtcCTTCAGATG
AAGAATGGGAAAGAGCAACAAAGATTTGTAAATTCTTGCAACCATTTTAT
GAAATTACAACATTAATTTCTGGCACAAGTTATCCTACTTCCaacttgta
ttttttacaagtttggAAAATCCAATGCCTTTTAATGGGAAGTGTAACAG
GTGAAGATAAAGTTGTAAGAGATATGGAATTAAAAATGCACAAGCTTCAA
GTTGCTAATAAATCTGGAAGGACTCAActtgatatatatttagatGAACC
CACTTTAGATCTTGATTTTACGGAGCATATGGATATACTACAATGGTGGA
AGAATAATAGTCAACGTTTTCCGGATCTCTCCTTAATGGCTAGGGACTTT
TTAAGCATCCCTATTACCACAGTTGCATCTGAATCTACATTTAATATTGG
TTCTTGTATCCTTAACAAGTATAGAAACCGTCTCTTGCCTGAAAATGTAG
AAGCAATTATTTGTGTTTCTAGTTGGAAGTATGGTTTTAATCCGGGTAAT
TCATTTAAtccaattttaattcttaaatgttattatttatataattttga
tattcatTTCAACAtccttactttaattttttttatgtttaatttatttt
gaGAATTAAAAATGCACAAGCTTCAAGTTGCTAATAAATCTGGAAGGACT
CAActtgatatatatttagatGAACCCACTTTAGATCTTGATTTTACGGA
GCATATGGATATACTACAATGGTGGAAGAATAATAGTCAACGTTTTCCGG
ATCTCTCCTTAATGGCTAGGGACTTTTTAAGCATCCCTATTACCACAGTT
GCATCTGAATCTACATTTAATATTGGTTCTTGTATCCTTAACAAGTATAG
AAACCGTCTCTTGCCTGAAAATGTAGAAGCAATTATTTGTGTTTCTAGTT
GGAAGTATGGTTTTAATCCGGGTAATTCATTTAAtccaattttaattctt
aaatgttattatttatataattttgatattcatTTCAACAtccttacttt
aattttttttatgtttaatttattttga
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003656Znf_BED
IPR008906HATC_C_dom
IPR012337RNaseH-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity