rna-KK1_025136

Transcript Overview
Namerna-KK1_025136
Unique Namerna-KK1_025136_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length387
ProductSerine/threonine protein phosphatase 7 long form isogeny
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cccrR0202Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cccrR0203Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccpsR165Pisum sativum Cameor genome v1aPisum sativum
ccpsR166Pisum sativum Cameor genome v1aPisum sativum
ccpsR167Pisum sativum Cameor genome v1aPisum sativum
ccpsR168Pisum sativum Cameor genome v1aPisum sativum
ccccL001Cajanus cajan Asha genome v1.0Cajanus cajan
caiccL0541Cicer arietinum ICC 4958 genome v2Cicer arietinum
caiccL0542Cicer arietinum ICC 4958 genome v2Cicer arietinum
caiccL0718Cicer arietinum ICC 4958 genome v2Cicer arietinum
caiccL0720Cicer arietinum ICC 4958 genome v2Cicer arietinum
caccL0581Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL0767Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asccL0054Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asccL0672Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cctifR0207Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0208Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0209Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR0213Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0214Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0222Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvuaR0235Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvuaR0236Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvssR0245Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvssR0247Vicia sativa cv. Studenica genome v1.0Vicia sativa
canccL0581Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL0775Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjccL0387Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL0708Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ccccaR0274Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0275Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR0256Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0257Vigna umbellata FF25 genome v1.0Vigna umbellata

Orthologs
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan03g317500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_025136gene-KK1_025136_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_025136rna-KK1_025136_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_025136_Cc_Asha_v1.0rna-KK1_025136_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_025136_Cc_Asha_v1.0-exon-Scaffold136490-KQ483418.1_Cc_Asha_v1.0-1571082112:374566..374952rna-KK1_025136_Cc_Asha_v1.0-exon-Scaffold136490-KQ483418.1_Cc_Asha_v1.0-1571082112:374566..374952Cajanus cajanexon
rna-KK1_025136_Cc_Asha_v1.0-exon-Scaffold136490-KQ483418.1_Cc_Asha_v1.0-1571847872:374566..374952rna-KK1_025136_Cc_Asha_v1.0-exon-Scaffold136490-KQ483418.1_Cc_Asha_v1.0-1571847872:374566..374952Cajanus cajanexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_025136_Cc_Asha_v1.0-CDS-Scaffold136490-KQ483418.1_Cc_Asha_v1.0-1571082112:374566..374952rna-KK1_025136_Cc_Asha_v1.0-CDS-Scaffold136490-KQ483418.1_Cc_Asha_v1.0-1571082112:374566..374952Cajanus cajanCDS
rna-KK1_025136_Cc_Asha_v1.0-CDS-Scaffold136490-KQ483418.1_Cc_Asha_v1.0-1571847872:374566..374952rna-KK1_025136_Cc_Asha_v1.0-CDS-Scaffold136490-KQ483418.1_Cc_Asha_v1.0-1571847872:374566..374952Cajanus cajanCDS


Homology
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BLAST of rna-KK1_025136 vs. DB:Swiss
Match: MAIL1_ARATH (Protein MAIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=MAIL1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.295e-24
Identity = 53/118 (44.92%), Postives = 74/118 (62.71%), Query Frame = 1 
Query:   16 IHAGPIDDSLLRLQPFHISEHIWNGAEDRVLKVRSAKQSELRGGDIPAVVQDLLQRAGFMGMAQISYFPVDNHLISALVERWRPETHTFHMPFGECTITLEDVAILLGLKISGAPITG 369
            I  GP+D S+L  Q  H+S  +W G E  +L+ +    S L    +     +L+ +AGF    +I    ++N LISALVERWR ET+TFH+P GE TITL++VA++LGL+I G PI G
Sbjct:    3 IDVGPVDPSVLYEQDLHVSSAVWEGQERGLLRCQE-HTSLLHQWKLTDEQINLVDKAGFGYFRKIGPMSLNNSLISALVERWRRETNTFHLPLGEMTITLDEVALVLGLEIDGDPIVG 119
[Close]
BLAST of rna-KK1_025136 vs. DB:Swiss
Match: MAIL2_ARATH (Protein MAIN-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=At2g04865 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.227e-23
Identity = 52/119 (43.70%), Postives = 73/119 (61.34%), Query Frame = 1 
Query:   13 IIHAGPIDDSLLRLQPFHISEHIWNGAEDRVLKVRSAKQSELRGGDIPAVVQDLLQRAGFMGMAQISYFPVDNHLISALVERWRPETHTFHMPFGECTITLEDVAILLGLKISGAPITG 369
            + + GP+ D +L  Q  H+S  +W+G E   L+      S+L    +     +L++RAGF  + +I    +DN LISALVERWR ET+TFH   GE T+TLED+A+LLGL I G P+ G
Sbjct:    4 LANPGPLKDIVLYDQEKHVSSAVWDGQERGALRCHE-HTSKLGEWKLKPKQIELVERAGFGFLRRIPAISLDNPLISALVERWRRETNTFHFTVGEMTVTLEDIALLLGLGIDGKPVIG 121
[Close]
BLAST of rna-KK1_025136 vs. DB:Swiss
Match: PPP7L_ARATH (Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana OX=3702 GN=MAIL3 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.101e-22
Identity = 54/122 (44.26%), Postives = 74/122 (60.66%), Query Frame = 1 
Query:   16 IHAGPIDDSLLRLQPFHISEHIWNGAEDRVLKVRSAKQSELRGGDI----PAVVQDLLQRAGFMGMAQISYFPVDNHLISALVERWRPETHTFHMPFGECTITLEDVAILLGLKISGAPITG 369
            +  GP+D S+L  Q  H S  IW   ED V       + +L G       P V Q L++  G  G+ ++++  +D  LI+ALVERWRPETHTFH+P GE T+TL+DV ILLGL++ G  +TG
Sbjct:   11 LDPGPVDQSILVWQHEHRSAAIW---EDEVPPRELTCRHKLLGMRDWPLDPLVCQKLIE-FGLYGVYKVAFIQLDYALITALVERWRPETHTFHLPAGEITVTLQDVNILLGLRVDGPAVTG 128
[Close]
BLAST of rna-KK1_025136 vs. DB:Swiss
Match: MAIN_ARATH (Protein MAINTENANCE OF MERISTEMS OS=Arabidopsis thaliana OX=3702 GN=MAIN PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.002e-18
Identity = 46/114 (40.35%), Postives = 66/114 (57.89%), Query Frame = 1 
Query:   43 LLRLQPFHISEHIWNGAEDRVLKVRSAKQSELRGGDIPAVVQDLLQRAGFMGMAQISYFPVDNHLISALVERWRPETHTFHMPFGECTITLEDVAILLGLKISGAPITGYASMD 384
            +L  Q  H+S  I  G E  VL+ +  + S L    +      L+++AGF     +    ++N LISALVERWR ET+TFH P GE TITL++V+++LGL + G P+ G    D
Sbjct:    3 VLYEQDKHVSSAILTGQERGVLRCQE-RTSLLHHWKLTKEQIALVEKAGFGWFRLVGSISLNNSLISALVERWRRETNTFHFPCGEMTITLDEVSLILGLAVDGKPVVGVKEKD 115
The following BLAST results are available for this feature:
BLAST of rna-KK1_025136 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 4
Match NameE-valueIdentityDescription
MAIL1_ARATH3.295e-2444.92Protein MAIN-LIKE 1 OS=Arabidopsis thaliana OX=370... [more]
MAIL2_ARATH3.227e-2343.70Protein MAIN-LIKE 2 OS=Arabidopsis thaliana OX=370... [more]
PPP7L_ARATH8.101e-2244.26Serine/threonine-protein phosphatase 7 long form h... [more]
MAIN_ARATH3.002e-1840.35Protein MAINTENANCE OF MERISTEMS OS=Arabidopsis th... [more]
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InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019557Aminotransferase-like, plant mobile domainPFAMPF10536PMDcoord: 63..123
e-value: 6.4E-23
score: 81.5

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_025136_Cc_Asha_v1.0 ID=rna-KK1_025136_Cc_Asha_v1.0; Name=rna-KK1_025136; organism=Cajanus cajan; type=mRNA; length=387bp
ATGTCTAGACAGATAATTCATGCAGGACCCATCGATGATTCATTATTAAG
GCTTCAACCATTCCATATATCTGAGCATATATGGAATGGAGCTGAGGATA
GGGTTTTGAAGGTTAGAAGTGCAAAACAATCAGAGTTGCGTGGTGGTGAC
ATTCCAGCTGTTGTTCAGGATCTTCTACAGAGGGCTGGTTTTATGGGGAT
GGCGCAGATTAGTTACTTTCCTGTGGATAATCATTTAATATCTGCGTTAG
TTGAGCGATGGAGACCAGAGACCCACACGTTTCACATGCCCTTCGGTGAG
TGTACTATCACGTTGGAGGATGTTGCAATTTTACTTGGGTTGAAGATCTC
TGGGGCACCCATTACTGGATACGCGAGTATGGATTGA
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protein sequence of rna-KK1_025136_Cc_Asha_v1.0

>rna-KK1_025136_Cc_Asha_v1.0 ID=rna-KK1_025136_Cc_Asha_v1.0; Name=rna-KK1_025136_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=128bp
MSRQIIHAGPIDDSLLRLQPFHISEHIWNGAEDRVLKVRSAKQSELRGGD
IPAVVQDLLQRAGFMGMAQISYFPVDNHLISALVERWRPETHTFHMPFGE
CTITLEDVAILLGLKISGAPITGYASMD
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mRNA from alignment at Scaffold136490-KQ483418.1:374566..374952+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_025136_Cc_Asha_v1.0 ID=rna-KK1_025136_Cc_Asha_v1.0; Name=rna-KK1_025136; organism=Cajanus cajan; type=mRNA; length=387bp; location=Sequence derived from: Scaffold136490-KQ483418.1:374566..374952+ (Cajanus cajan
ATGTCTAGACAGATAATTCATGCAGGACCCATCGATGATTCATTATTAAG
GCTTCAACCATTCCATATATCTGAGCATATATGGAATGGAGCTGAGGATA
GGGTTTTGAAGGTTAGAAGTGCAAAACAATCAGAGTTGCGTGGTGGTGAC
ATTCCAGCTGTTGTTCAGGATCTTCTACAGAGGGCTGGTTTTATGGGGAT
GGCGCAGATTAGTTACTTTCCTGTGGATAATCATTTAATATCTGCGTTAG
TTGAGCGATGGAGACCAGAGACCCACACGTTTCACATGCCCTTCGGTGAG
TGTACTATCACGTTGGAGGATGTTGCAATTTTACTTGGGTTGAAGATCTC
TGGGGCACCCATTACTGGATACGCGAGTATGGATTGA
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Coding sequence (CDS) from alignment at Scaffold136490-KQ483418.1:374566..374952+

>rna-KK1_025136_Cc_Asha_v1.0 ID=rna-KK1_025136_Cc_Asha_v1.0; Name=rna-KK1_025136; organism=Cajanus cajan; type=CDS; length=774bp; location=Sequence derived from: Scaffold136490-KQ483418.1:374566..374952+ (Cajanus cajan
ATGTCTAGACAGATAATTCATGCAGGACCCATCGATGATTCATTATTAAG
GCTTCAACCATTCCATATATCTGAGCATATATGGAATGGAGCTGAGGATA
GGGTTTTGAAGGTTAGAAGTGCAAAACAATCAGAGTTGCGTGGTGGTGAC
ATTCCAGCTGTTGTTCAGGATCTTCTACAGAGGGCTGGTTTTATGGGGAT
GGCGCAGATTAGTTACTTTCCTGTGGATAATCATTTAATATCTGCGTTAG
TTGAGCGATGGAGACCAGAGACCCACACGTTTCACATGCCCTTCGGTGAG
TGTACTATCACGTTGGAGGATGTTGCAATTTTACTTGGGTTGAAGATCTC
TGGGGCACCCATTACTGGATACGCGAGTATGGATTGAATGTCTAGACAGA
TAATTCATGCAGGACCCATCGATGATTCATTATTAAGGCTTCAACCATTC
CATATATCTGAGCATATATGGAATGGAGCTGAGGATAGGGTTTTGAAGGT
TAGAAGTGCAAAACAATCAGAGTTGCGTGGTGGTGACATTCCAGCTGTTG
TTCAGGATCTTCTACAGAGGGCTGGTTTTATGGGGATGGCGCAGATTAGT
TACTTTCCTGTGGATAATCATTTAATATCTGCGTTAGTTGAGCGATGGAG
ACCAGAGACCCACACGTTTCACATGCCCTTCGGTGAGTGTACTATCACGT
TGGAGGATGTTGCAATTTTACTTGGGTTGAAGATCTCTGGGGCACCCATT
ACTGGATACGCGAGTATGGATTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR019557AminoTfrase-like_pln_mobile