rna-KK1_025136
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_025136 vs. DB:Swiss
Match: MAIL1_ARATH (Protein MAIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=MAIL1 PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 3.295e-24 Identity = 53/118 (44.92%), Postives = 74/118 (62.71%), Query Frame = 1 Query: 16 IHAGPIDDSLLRLQPFHISEHIWNGAEDRVLKVRSAKQSELRGGDIPAVVQDLLQRAGFMGMAQISYFPVDNHLISALVERWRPETHTFHMPFGECTITLEDVAILLGLKISGAPITG 369 I GP+D S+L Q H+S +W G E +L+ + S L + +L+ +AGF +I ++N LISALVERWR ET+TFH+P GE TITL++VA++LGL+I G PI G Sbjct: 3 IDVGPVDPSVLYEQDLHVSSAVWEGQERGLLRCQE-HTSLLHQWKLTDEQINLVDKAGFGYFRKIGPMSLNNSLISALVERWRRETNTFHLPLGEMTITLDEVALVLGLEIDGDPIVG 119
BLAST of rna-KK1_025136 vs. DB:Swiss
Match: MAIL2_ARATH (Protein MAIN-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=At2g04865 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 3.227e-23 Identity = 52/119 (43.70%), Postives = 73/119 (61.34%), Query Frame = 1 Query: 13 IIHAGPIDDSLLRLQPFHISEHIWNGAEDRVLKVRSAKQSELRGGDIPAVVQDLLQRAGFMGMAQISYFPVDNHLISALVERWRPETHTFHMPFGECTITLEDVAILLGLKISGAPITG 369 + + GP+ D +L Q H+S +W+G E L+ S+L + +L++RAGF + +I +DN LISALVERWR ET+TFH GE T+TLED+A+LLGL I G P+ G Sbjct: 4 LANPGPLKDIVLYDQEKHVSSAVWDGQERGALRCHE-HTSKLGEWKLKPKQIELVERAGFGFLRRIPAISLDNPLISALVERWRRETNTFHFTVGEMTVTLEDIALLLGLGIDGKPVIG 121
BLAST of rna-KK1_025136 vs. DB:Swiss
Match: PPP7L_ARATH (Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana OX=3702 GN=MAIL3 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 8.101e-22 Identity = 54/122 (44.26%), Postives = 74/122 (60.66%), Query Frame = 1 Query: 16 IHAGPIDDSLLRLQPFHISEHIWNGAEDRVLKVRSAKQSELRGGDI----PAVVQDLLQRAGFMGMAQISYFPVDNHLISALVERWRPETHTFHMPFGECTITLEDVAILLGLKISGAPITG 369 + GP+D S+L Q H S IW ED V + +L G P V Q L++ G G+ ++++ +D LI+ALVERWRPETHTFH+P GE T+TL+DV ILLGL++ G +TG Sbjct: 11 LDPGPVDQSILVWQHEHRSAAIW---EDEVPPRELTCRHKLLGMRDWPLDPLVCQKLIE-FGLYGVYKVAFIQLDYALITALVERWRPETHTFHLPAGEITVTLQDVNILLGLRVDGPAVTG 128
BLAST of rna-KK1_025136 vs. DB:Swiss
Match: MAIN_ARATH (Protein MAINTENANCE OF MERISTEMS OS=Arabidopsis thaliana OX=3702 GN=MAIN PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 3.002e-18 Identity = 46/114 (40.35%), Postives = 66/114 (57.89%), Query Frame = 1 Query: 43 LLRLQPFHISEHIWNGAEDRVLKVRSAKQSELRGGDIPAVVQDLLQRAGFMGMAQISYFPVDNHLISALVERWRPETHTFHMPFGECTITLEDVAILLGLKISGAPITGYASMD 384 +L Q H+S I G E VL+ + + S L + L+++AGF + ++N LISALVERWR ET+TFH P GE TITL++V+++LGL + G P+ G D Sbjct: 3 VLYEQDKHVSSAILTGQERGVLRCQE-RTSLLHHWKLTKEQIALVEKAGFGWFRLVGSISLNNSLISALVERWRRETNTFHFPCGEMTITLDEVSLILGLAVDGKPVVGVKEKD 115 The following BLAST results are available for this feature:
BLAST of rna-KK1_025136 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 4
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_025136_Cc_Asha_v1.0 ID=rna-KK1_025136_Cc_Asha_v1.0; Name=rna-KK1_025136; organism=Cajanus cajan; type=mRNA; length=387bpback to top protein sequence of rna-KK1_025136_Cc_Asha_v1.0 >rna-KK1_025136_Cc_Asha_v1.0 ID=rna-KK1_025136_Cc_Asha_v1.0; Name=rna-KK1_025136_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=128bpback to top mRNA from alignment at Scaffold136490-KQ483418.1:374566..374952+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_025136_Cc_Asha_v1.0 ID=rna-KK1_025136_Cc_Asha_v1.0; Name=rna-KK1_025136; organism=Cajanus cajan; type=mRNA; length=387bp; location=Sequence derived from: Scaffold136490-KQ483418.1:374566..374952+ (Cajanus cajanback to top Coding sequence (CDS) from alignment at Scaffold136490-KQ483418.1:374566..374952+ >rna-KK1_025136_Cc_Asha_v1.0 ID=rna-KK1_025136_Cc_Asha_v1.0; Name=rna-KK1_025136; organism=Cajanus cajan; type=CDS; length=774bp; location=Sequence derived from: Scaffold136490-KQ483418.1:374566..374952+ (Cajanus cajanback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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