rna-KK1_025163
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_025163 vs. DB:Swiss
Match: PUB6_ARATH (U-box domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=PUB6 PE=2 SV=2) HSP 1 Score: 996.882 bits (2576), Expect = 0.000e+0 Identity = 527/784 (67.22%), Postives = 620/784 (79.08%), Query Frame = 1 Query: 1 MDVAEVEENLFAVSDAKLHGQMCKTLSIIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKVKNILQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFATIEFALDPSEKQVGDDLIALLQQGRKFSDSSDSNELESFHQAATRLGITSSRAALTERRALKKLIERARTEEDKRKESIVAYLLHLMRKYSKLFRSEFSDDNDSQGSSPCSPTVQGSIEDSVPGSHSQAFDRQISKLSCFNFKPNNSSKSGLMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQRLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPESLDLNYWGLVLXXXXXXXXXXXXXXXXCKLKGVQVVPLEESGISEESVE-----NGTESVSVQGEDTEQYFSFLKVLTEENNWRRQCXXXXXXXXXXXXXXXARIFMGANGFVEALLQFLHSAVREGSLMALESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTSSYGCTTALYLNLSCLEEAKPMIGMSQAVQFLIQLLQSDADVQCKQDSLHALYNLSTVPSNIPYLLSSGITSGLQSLLVGEGDCMWIEKSIAVLINLATSEVGREEILSTPGLISALASILDTGELLEQEQAVCCLLILCNRSETCSEMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFREQR-RDQSPIKTHESPPETSDLSMPPAEMQPLCNDLSMPPAEMQPLCKSISRRKS-GKTFNFFWKSKSYSVYQ 2331 MDV+E+EENLFA SDAKLHG MCK LS +YCKVLS+FPSLE ARPRSKSGIQ LCSLH+ALEK KNILQHCSECSKLYLAITGD+VLLKFEKAK AL DSLRRVEDIVP SIG Q+ +IV E +F LDPSEK+VGD +IALLQQG+KF + SDS ELE FHQAATRL ITSSR+AL ERRALKK+I+RAR EEDKRKESIVAYLLHLMRKYSKLFRSE D+NDS S+PCSPT QG ED V AF RQ+SK N+KP NS KSG MP+PPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHN+CPKTQQ+L HL LTPNYCVKGL+ASWCEQNG+ +P GPPESLDLNYW L +S+SES NSKSV+SV C K ++VVPLEES E + N + V + E Y L ++ +E + ++C+VVE +R+LL+D+EEARI MGANGFVEA LQFL SAV + + A E+GAMALFNLAVNNNRNKE+ML++GV+ LLE+MIS + S G TALYLNLSCLE+AKP+IG SQAV F + LL D QCK D+LHALYNLST NIP LLSS I LQ +L G+ +WIEKS+AVL+NLA+S G+EE+++T G+IS LA++LDTG+ +EQEQAV CL+ILC SE+C +MVLQEGVIP+LVSISVNG+PRGR+K+QKLLMLFREQR RDQ E+P +T +S P A P +S P +E++PL KSISRRK+ + F+F WK KS+S++ Sbjct: 1 MDVSELEENLFAASDAKLHGDMCKELSAVYCKVLSIFPSLEEARPRSKSGIQTLCSLHIALEKAKNILQHCSECSKLYLAITGDAVLLKFEKAKSALIDSLRRVEDIVPSSIGSQILDIVGELEHTKFLLDPSEKEVGDRIIALLQQGKKFDNGSDSTELEIFHQAATRLSITSSRSALAERRALKKVIDRARVEEDKRKESIVAYLLHLMRKYSKLFRSEMMDENDSPCSTPCSPTGQGPNEDRV-----NAFGRQLSKFGSINYKPMNSRKSGQMPIPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNSCPKTQQQLPHLSLTPNYCVKGLIASWCEQNGITVPTGPPESLDLNYWRLAMSDSESPNSKSVDSVGLCTPKDIRVVPLEESSTIESERQQKEKNNAPDEVDSEINVLEGYQDILAIVDKEEDLAKKCKVVENVRILLKDNEEARILMGANGFVEAFLQFLESAVHDNNAAAQETGAMALFNLAVNNNRNKELMLTSGVIPLLEKMISCSQSQGPATALYLNLSCLEKAKPVIGSSQAVSFFVNLLLQDTKTQCKLDALHALYNLSTYSPNIPTLLSSNIIKSLQ-VLASTGNHLWIEKSLAVLLNLASSREGKEEMITTQGMISTLATVLDTGDTVEQEQAVSCLVILCTGSESCIQMVLQEGVIPSLVSISVNGSPRGRDKSQKLLMLFREQRHRDQPSPNKEEAPRKT--VSAPMAIPAP----VSAPESEVKPLTKSISRRKTMTRPFSFLWK-KSHSIHH 771
BLAST of rna-KK1_025163 vs. DB:Swiss
Match: PUB45_ARATH (U-box domain-containing protein 45 OS=Arabidopsis thaliana OX=3702 GN=PUB45 PE=1 SV=1) HSP 1 Score: 979.163 bits (2530), Expect = 0.000e+0 Identity = 526/783 (67.18%), Postives = 623/783 (79.57%), Query Frame = 1 Query: 1 MDVAEVEENLFAVSDAKLHGQMCKTLSIIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKVKNILQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFATIEFALDPSEKQVGDDLIALLQQGRKFSDSSDSNELESFHQAATRLGITSSRAALTERRALKKLIERARTEEDKRKESIVAYLLHLMRKYSKLFRSEFSDDNDSQGSS--PCSPTVQGSIEDSVPGSHSQAFDRQISKLSCFNFKP-NNSSKSGLMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQRLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPESLDLNYWGLVLXXXXXXXXXXXXXXXXCKLKGVQVVPLEESG-ISEESVENGTESVSVQGEDTEQYFSFLKVLTEENNWRRQCXXXXXXXXXXXXXXXARIFMGANGFVEALLQFLHSAVREGSLMALESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTSSYGCTTALYLNLSCLEEAKPMIGMSQAVQFLIQLLQSDADVQCKQDSLHALYNLSTVPSNIPYLLSSGITSGLQSLLVGEGDCMWIEKSIAVLINLATSEVGREEILSTPGLISALASILDTGELLEQEQAVCCLLILCNRSETCSEMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFREQR-RDQSPIKTHESPPETSDLSMPPAEMQPLCNDLSMPPAEMQPLCKSISRRKSGKTFNFFWKSKSYSVYQC 2334 MDV EVEEN FA DAKLHG+MC LS+IYCK++S+FPSLEAARPRSKSGIQALCSLHV LEKVKNIL+HC+E SKLYLAITGDSV+LKFEKAK +L DSLRRVEDIV QSIG Q+ EI+ E EF+LDP+EK++GD +I LLQQG F SSD+NELE FHQAATRLGITSSRAALTERR LKKLIERAR E+DKRKESIVAYLLHLMRKYSKLFRSE DDNDSQGSS PCSPT+QGSI+D +H +AFDRQ+SKLS FNF+ NN+ +S M +PPEELRCPISLQLMYDPVIIASGQTYER+CIEKWFSDGHN CPKT Q+LSHLCLTPNYCVK L++SWCEQNGV +P+GPPESLDLNYW L LS SEST+++S V SCKLK V+VVPLEESG I EE+ E +E Q E+ L LT+ + R++C VVEQ+R+LL+DDEEARI MG NG VEALLQFL SA+ E + A + GAMALFNLAV+NNRNKE+ML++G++ LLEEM+ S+G TA+YLNLSCLEEAKP+IG S AV F++ LL ++ +VQCK D+LH+L++LST P NIP LLS+ + + LQSL + + + W EKS+AVL+NL +E G++E++S P L+S L +ILDTGE EQEQAV LLILCN SE CSEMVLQEGVIP+LVSISVNGT RGRE+AQKLL LFRE R RDQ TH + P+ ++++ P S E +P CKS SR+K G+ F+F WKSKS+SVYQC Sbjct: 1 MDVNEVEENFFAPGDAKLHGKMCNALSVIYCKIMSIFPSLEAARPRSKSGIQALCSLHVVLEKVKNILRHCTESSKLYLAITGDSVVLKFEKAKSSLTDSLRRVEDIVQQSIGSQLLEILMELENTEFSLDPAEKEIGDQIIGLLQQGGNFESSSDNNELEVFHQAATRLGITSSRAALTERRCLKKLIERARMEDDKRKESIVAYLLHLMRKYSKLFRSEIWDDNDSQGSSSLPCSPTIQGSIDD----AHGRAFDRQLSKLSSFNFRSCNNNRRSSQMSVPPEELRCPISLQLMYDPVIIASGQTYERICIEKWFSDGHNTCPKTHQQLSHLCLTPNYCVKALISSWCEQNGVQVPDGPPESLDLNYWRLALSVSESTDTRSAKRVGSCKLKDVKVVPLEESGTIKEEACE--SEYQEDQVTLVERCTELLTTLTDVDTLRKKCRVVEQIRVLLKDDEEARILMGENGCVEALLQFLGSALNENNASAQKVGAMALFNLAVDNNRNKELMLASGIIPLLEEMLCNPHSHGSVTAIYLNLSCLEEAKPVIGSSLAVPFMVNLLWTETEVQCKVDALHSLFHLSTYPPNIPCLLSADLVNALQSLTISD-EQRWTEKSLAVLLNLVLNEAGKDEMVSAPSLVSNLCTILDTGEPNEQEQAVSLLLILCNHSEICSEMVLQEGVIPSLVSISVNGTQRGRERAQKLLTLFRELRQRDQ----THLTEPQHTEVTSPEDGFSV----ASAAVTETKPQCKSASRKKMGRAFSFLWKSKSFSVYQC 768
BLAST of rna-KK1_025163 vs. DB:Swiss
Match: PUB7_ARATH (U-box domain-containing protein 7 OS=Arabidopsis thaliana OX=3702 GN=PUB7 PE=2 SV=1) HSP 1 Score: 962.985 bits (2488), Expect = 0.000e+0 Identity = 525/792 (66.29%), Postives = 608/792 (76.77%), Query Frame = 1 Query: 1 MDVAEVEENLFAVSDAKLHGQMCKTLSIIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKVKNILQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFATIEFALDPSEKQVGDDLIALLQQGRKFSDSSDSNELESFHQAATRLGITSSRAALTERRALKKLIERARTEEDKRKESIVAYLLHLMRKYSKLFRSEFSDDNDSQGSSPCSPTV-QGSIEDSVPGSHSQAFDRQISKLSCFNFKPNNSSKSGLMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQRLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPESLDLNYWGLVLXXXXXXXXXXXXXXXXCKLKGVQVVPLEESGISEESVENGTESVSVQGEDT--------EQYFSFLKVLTEENNWRRQCXXXXXXXXXXXXXXXARIFMGANGFVEALLQFLHSAVREGSLMALESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTSSYGCTTALYLNLSCLEEAKPMIGMSQAVQFLIQLLQSDADVQCKQDSLHALYNLSTVPSNIPYLLSSGITSGLQSLLVGEGDCMWIEKSIAVLINLATSEVGREEILSTPGLISALASILDTGELLEQEQAVCCLLILCNRSETCSEMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFREQR--RDQSPIKTHESP---PETSDLSMPPAEMQPLCNDLSMPPAEMQPLCKSISRRKS-GKTFNFFWKSKSYSVYQ 2331 MDV E+EENLFA SDAKLHG MCK LS + CKVLS+FPSLE ARPRSKSGIQALCSLH+ALEK KNILQHCSECSKLYLAITGD+VLLKFEKAK AL D L+RVEDIVP SIG Q+ EIV E F LDPSEK+VGD +IALLQQG+KF + +D+ ELE FH+AATRL ITSSR AL ERRALKKLI+RAR EEDKRKESIVAYLLHLMRK SKLFRSE D+NDS GS PCSP GS+ F RQ+S+ N KP NS SG MP+PPEELRCPISLQLM DPVIIASGQTYERVCIEKWFSDGHN CPKTQQ+L H+ LTPN CVKGL+ASWCEQNG IP GPPES DL+YW L LS+SEST S+SVNS+ S KLKGV++VPLEE+G + +N ES +D E+Y L VL EE ++C+VVE++RLLL+DDEEARIFMGANGFVEALL+FL SAV + + A +SGAMALFNLAVNNNRNKE+ML++GV+ LLE+MIS S+G TALYLNLSCL+EAK +IG SQAV FL+QLLQ + + QCK D+LHALYNLST NIP LLSS I LQ LL G+ +WIEKS+AVL+NLA+S+ G++E +S+ G+IS+LA++LD G+ EQEQAV CLLILCN E+C +MVLQEGVIP+LVSISVNGTPRGREK+QKLLMLFRE+R RDQ E P P LS P + S+ E + L KS+SRRKS + F+FFWK KSYSV + Sbjct: 1 MDVTELEENLFAASDAKLHGDMCKELSGVLCKVLSIFPSLEGARPRSKSGIQALCSLHIALEKAKNILQHCSECSKLYLAITGDAVLLKFEKAKIALIDGLKRVEDIVPSSIGSQILEIVGELENTRFMLDPSEKEVGDQIIALLQQGKKFDNCNDNTELEIFHRAATRLSITSSRVALAERRALKKLIDRARAEEDKRKESIVAYLLHLMRKCSKLFRSEILDENDSPGSYPCSPNEDHGSV---------HGFGRQLSRFGSLNDKPMNSINSGQMPVPPEELRCPISLQLMCDPVIIASGQTYERVCIEKWFSDGHNTCPKTQQQLPHISLTPNNCVKGLIASWCEQNGTQIPSGPPESQDLDYWRLALSDSESTKSQSVNSIGSYKLKGVKIVPLEENGTTVVERQNTEESFVSDDDDEEDSDINVLERYQDLLAVLNEEEGLEKKCKVVEKIRLLLKDDEEARIFMGANGFVEALLRFLGSAVDDNNAAAQDSGAMALFNLAVNNNRNKELMLTSGVIRLLEKMISSAESHGSATALYLNLSCLDEAKSVIGSSQAVPFLVQLLQKEIETQCKLDALHALYNLSTYSPNIPALLSSNIIKSLQGLLASTGENLWIEKSLAVLLNLASSQEGKDEAVSSQGMISSLATVLDMGDTTEQEQAVSCLLILCNGRESCIQMVLQEGVIPSLVSISVNGTPRGREKSQKLLMLFREERQQRDQPSSNRDEPPQKEPARKSLSAPLSVHGSTPASASVQDYEPRVLSKSMSRRKSMARPFSFFWK-KSYSVRE 782
BLAST of rna-KK1_025163 vs. DB:Swiss
Match: PUB12_ARATH (U-box domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=PUB12 PE=2 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 1.101e-45 Identity = 179/676 (26.48%), Postives = 303/676 (44.82%), Query Frame = 1 Query: 112 PSLEAARPRSKSG---IQALCSLHVALEKVKNILQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFATIEFALDPSEKQVGDDLIALLQQ-GRKFSDSSDSNELESFHQAATRLGITSSRAALTERRALKKLIERAR--TEEDKRKESIVAYLLHLMRKYSKLFRSEFSDDNDSQGSSPCSPTVQGSIEDSVPGSHSQAFDRQISKLSCFNFKPNNSSKSGLMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQRLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPESLDLNYWGLVLXXXXXXXXXXXXXXXXCKLKGVQVVPLEESGISEESVENGTESVSVQGEDTEQYFSFLKVLTEENNWRRQCXXXXXXXXXXXXXXXARIFMGANGFVEALLQFLHSAVREGSLMALESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTS--SYGCTTALYLNLSCLEEAKPMIGMSQAVQFLIQLLQSDADVQCKQDSLHALYNLSTVPSNIPYLLSSGITSGLQSLLVGEGDCMWIEKSIAVLINLATSEVGREEILSTPGLISALASILDTGELLEQEQAVCCLLILCNRSETCSEMVLQEGVIPALVSISVNGTPRGREKAQKLLMLF 2115 P LE R +S + AL S+ +L K++L S SK+YL + D V++KF+K LE +L I+P + +E + D ++QV L+ L + G++ D D + L + S R ++ E ++++ E+ + T D +ES+ LL ++ S +D S V I+D V + D + S P + M +PPEE RCPISL+LM DPVI++SGQTYER CI+KW GH CPKTQ+ L+ +TPNY ++ L+A WCE NG+ PP+ +++ S S S N + LK S Q ED +++L ++NN R + + A+G + L+ L + S E ++ NL++ +I+ S+G + + ++ K S + A +LS ++E K IG + A+ L+ LL S+ + K+D+ AL+NL N + +G+ L LL E + +++S+++L L++ G+ E+ + + L + +G +E + L+ LC+ ++ + G++ L+ ++ NGT RG+ KA +LL F Sbjct: 46 PMLEEIRDNQESSSEVVNALLSVKQSLLHAKDLLSFVSHVSKIYLVLERDQVMVKFQKVTSLLEQAL----SIIP-------------YENLEIS-DELKEQVELVLVQLRRSLGKRGGDVYDDELYKDV------LSLYSGRGSVMESDMVRRVAEKLQLMTITDLTQESLA--LLDMVSS---------SGGDDPGESFEKMSMVLKKIKDFVQTYNPNLDDAPLRLKSSL---PKSRDDDRDMLIPPEEFRCPISLELMTDPVIVSSGQTYERECIKKWLEGGHLTCPKTQETLTSDIMTPNYVLRSLIAQWCESNGIE----PPKRPNISQPSSKASSSSSAPDDEHNKIEELLLK----------------------LTSQQPEDRRSAAGEIRLLAKQNNHNR-------------------VAIAASGAIPLLVNLL--TISNDS-RTQEHAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDENKVTIGAAGAIPPLVTLL-SEGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLT-EPESGMVDESLSILAILSSHPDGKSEVGAADA-VPVLVDFIRSGSPRNKENSAAVLVHLCSWNQQHLIEAQKLGIMDLLIEMAENGTDRGKRKAAQLLNRF 632
BLAST of rna-KK1_025163 vs. DB:Swiss
Match: PUB12_ORYSJ (U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=2 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 2.123e-41 Identity = 131/442 (29.64%), Postives = 203/442 (45.93%), Query Frame = 1 Query: 832 PLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQRLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPESLDLNYWGLVLXXXXXXXXXXXXXXXXCKLKGVQVVPLEESGISEESVENGTESVSVQGEDTEQYFSF--LKVLTEENNWRRQCXXXXXXXXXXXXXXXARIFMGANGFVEALLQFLHSA---VREGSLMALESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTSSYGC---TTALYLNLSCLEEAKPMIGMSQAVQFLIQLLQSDADVQCKQDSLHALYNLSTVPSNIPYLLSSGITSGLQSLLVGEGDCMWIEKSIAVLINLATSEVGREEILSTPGLISALASILDTGELLEQEQAVCCLLILCNRSETCSEMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFREQRRD 2133 P+ P+E RCPISL+LM DPVI++SGQTYER CI+KW GH CPKTQQ LSH LTPN+ +K L++ WCE NG+ +P+ S D K + + +G+ S+ N S G EQ + +++L + N R C + G + L+ L S+ +E ++ AL NL+++ N I+ S + ++E + KT S A +LS ++E K IG + A+ LI LL D + K+D+ A++NL N + +GI L + LV M I++++++L LA + G+ +++ I L ++ TG +E A L +LC+ + GV AL +S GT R + KA +L L + D Sbjct: 226 PIIPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVLKSLISQWCEANGIELPKNKQNSRD--------------------------KKAAKSSDYDHAGLV--SLMNRLRS----GNQDEQRAAAGEIRLLAKRNVNNRIC-------------------IAEAGAIPLLVNLLSSSDPRTQEHAVTAL-------LNLSIHENNKASIVDSHAIPKIVE--VLKTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLL-CDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGM-IDEALSLLSILAGNPEGK-IVIARSEPIPPLVEVIKTGSPRNRENAAAILWLLCSADTEQTLAAKAAGVEDALKELSETGTDRAKRKASSILELMHQANED 604
BLAST of rna-KK1_025163 vs. DB:Swiss
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PUB2 PE=2 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.937e-37 Identity = 143/483 (29.61%), Postives = 221/483 (45.76%), Query Frame = 1 Query: 841 PEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQRLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPESLDLNY----WGLVLXXXXXXXXXXXXXXXXCKLKGVQVVPLEES--GISEESV------ENGTESVSVQGEDTEQYFSFLKVLTEENNWRRQCXXXXXXXXXXXXXXXARIFMGANGFVEALLQFLHSAVREGSLMALESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTSSYGCTTAL--YLNLSCLEEAKPMIGMSQAVQFLIQLLQSDADVQCKQDSLHALYNLSTVPSN------------IPYLLSSGITSGL----------------QSLLVGEGDCMW-----------IEKSIAVLINLATSEVGREEILSTPGLISALASILDTGELLEQEQAVCCLLILCNRSETCSEMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFREQRR 2130 P + RC +SL+LM DPVI+ASGQT+ERV I+KW G CPKT+Q LSH LTPN+ V+ +ASWCE N V PP+ L+L + + L++ +++S++ +S S + QV S GI E V N S+ +T F EE +WR + +R G++ +E ++ L ++ SL + LA N+ N+ ++ + L ++ T A+ LNLS + K +I S A+ LI +L++ + K +S L++LS + + LL SG SG ++ ++ G + +EK++ VL NLAT G+ I G I L +++ G +E A LL LC S V++EGVIP LV+++ +GT RG+EKAQ LL F+ R+ Sbjct: 241 PSDFRCSLSLELMTDPVIVASGQTFERVFIQKWIDMGLMVCPKTRQALSHTTLTPNFIVRAFLASWCETNNV----YPPDPLELIHSSEPFPLLVESVRASSSENGHSESLDAEELRQVFSRSASAPGIVSEVVCKTKRNNNAAADRSLTRSNTPWKFP------EERHWRHPGIIPATVRET-----------GSSSSIETEVKKLIDDLKSSSLDTQREATARIRILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQADAVTCLLNLSINDNNKSLIAESGAIVPLIHVLKTGYLEEAKANSAATLFSLSVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELMDPAFGMVEKAVVVLANLATVREGKIAI-GEEGGIPVLVEVVELGSARGKENATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFKAHRQ 701
BLAST of rna-KK1_025163 vs. DB:Swiss
Match: PUB10_ARATH (U-box domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=PUB10 PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.340e-37 Identity = 126/445 (28.31%), Postives = 204/445 (45.84%), Query Frame = 1 Query: 805 NNSSKSGLMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQRLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPESLDLNYWGLVLXXXXXXXXXXXXXXXXCKLKGVQVVPLEESGISEESVENGTESVSVQGEDTEQYFSFLKVLTEENNWRRQCXXXXXXXXXXXXXXXARIFMGANGFVEALLQFLHSAVREGSLMALESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTSSYGC---TTALYLNLSCLEEAKPMIGMSQAVQFLIQLLQSDADVQCKQDSLHALYNLSTVPSNIPYLLSSGITSGLQSLLVGEGDCMWIEKSIAVLINLATSEVGREEILSTPGLISALASILDTGELLEQEQAVCCLLILCNRSETCSEMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFREQRR 2130 ++S KS + +P E+ CPISL+LM DP I+++GQTYER I++W G+ +CPKTQQ+L + LTPNY ++ L++ WC ++ + P G N G S + + S CKL S +S+E+ +VS + S K T+ RI + G + L++ L S +G E+ + NL++ + + IML+ V S++ ++ + S A +LS +E K +IG S A+ L+ LLQ V+ K+D+ AL+NL N + +GI L +L ++++ +L LA+++V + IL I L L + +E A LL LC R + + G + L+ +S +GT R + KA LL L R+ R Sbjct: 233 DDSQKSDNLTIP-EDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLENFTLTPNYVLRSLISQWCTKHNIEQPGGYMNGRTKNSDG---SFRDLSGDMSAIRALVCKL-------------SSQSIEDRRTAVS-------EIRSLSKRSTDN-----------------------RILIAEAGAIPVLVKLLTS---DGDTETQENAVTCILNLSIYEHNKELIMLAGAVTSIV--LVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIMALVDLLQY-GSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMADEALTILSVLASNQVAKTAILRANA-IPPLIDCLQKDQPRNRENAAAILLCLCKRDTEKLISIGRLGAVVPLMELSRDGTERAKRKANSLLELLRKSSR 623
BLAST of rna-KK1_025163 vs. DB:Swiss
Match: PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 3.114e-34 Identity = 104/364 (28.57%), Postives = 187/364 (51.37%), Query Frame = 1 Query: 13 EVEENLFAVSDAKLH-GQMCKTLSIIYCKVLSVFPSL-EAARPRSKSGIQALCSLHVALEKVKNILQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLRRV---EDIVPQSIGCQVQEIVNEFATIEFALDPSEKQVGDDLIALLQQGRKFSDSSDSNELES-FHQAATRLGITSSRAALTERRALKKLIERARTEEDKRKESIVAYLLHLMRKYSKLFRSEFSDDNDSQGSSPCSPTVQGSIEDSVPGSHSQAFDRQISKLSCFNFKPNNSSKSGLMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQRLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPESL 1086 +V + A+SD ++ ++C L+ ++ +F + E+ P S+ ++ L +L A+ K+ L+ CS+ SK+YL + + V K + LE SL ++ E + + QV+ ++++F + +D S+ ++ +DL +L + SSD + + + A +L + E AL +++ + + + E + A +L +++ + + DDN E+ G +S++ + +++ S +P+ P++ RCPISL++M DPVI++SGQTYER CIEKW GH+ CPKTQQ L+ LTPNY ++ L+A WCE N + P+ PP SL Sbjct: 14 DVVNEIAAISDYRITVKKLCYNLARRLKLLVPMFEEIRESNEPISEDTLKTLMNLKEAMCSAKDYLKFCSQGSKIYLVMEREQVTSKLMEVSVKLEQSLSQIPYEELDISDEVREQVELVLSQFRRAKGRVDVSDDELYEDLQSLCNK------SSDVDAYQPVLERVAKKLHLMEIPDLAQESVALHEMVASSGGDVGENIEEM-AMVLKMIKDF-----VQTEDDNG---------------EEQKVGVNSRSNGQ------------TSTAASQKIPVIPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTLTPNYVLRSLIAQWCEANDIEPPK-PPSSL 337 HSP 2 Score: 72.0182 bits (175), Expect = 1.190e-11 Identity = 61/217 (28.11%), Postives = 110/217 (50.69%), Query Frame = 1 Query: 1462 ESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTS--SYGCTTALYLNLSCLEEAKPMIGMSQAVQFLIQLLQSDADVQCKQDSLHALYNLSTVPSNIPYLLSSGITSGLQSLLVGEGDCMWIEKSIAVLINLATSEVGREEILSTPGLISALASILDTGELLEQEQAVCCLLILCNRSETCSEMVLQEGVIPALVSISVNGTPRGREKAQKLL 2106 E AL NL++ N NK ++SAG + + +++ K S + A +LS ++E K IG A+ L+ LL ++ + K+D+ AL+NL N + +G+ L LL G M +++++A+L L++ G+ I+ + + +L + TG +E A L+ LC+ + G++ L+ ++ NGT RG+ KA +LL Sbjct: 412 EHSVTALLNLSICEN-NKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLL-NEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGM-VDEALAILAILSSHPEGKA-IIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQLL 624
BLAST of rna-KK1_025163 vs. DB:Swiss
Match: PUB5_ARATH (U-box domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PUB5 PE=3 SV=3) HSP 1 Score: 137.117 bits (344), Expect = 4.068e-32 Identity = 71/187 (37.97%), Postives = 115/187 (61.50%), Query Frame = 1 Query: 49 KLHGQMCKTLSIIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKVKNILQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFATIEFALDPSEKQVGDDLIALLQQGRKFSDSSDSNELESFHQAATRLGITSSRAALTERRALKKLIERARTEEDKRKESI 609 K+H MC L + +++ +FP +E ARP SGIQ LC LH AL+K K +LQ+CSE SKLY+A+TGD++L + +AK +LE L + IVP + ++ +IV + + + L+ SE++ G + L+Q+ S S+ +E++ FH AA +L +++ A +TERR+LK + E + +SI Sbjct: 14 KMHSSMCLELKRLVDRIMRIFPDIEDARPGCSSGIQTLCLLHNALDKTKQLLQYCSESSKLYMAVTGDAILARGSRAKKSLEQCLNDIRSIVPTILEIKISQIVQDLRSTQLTLEFSEEEAGKAIRELMQKST--SSSASPDEIKDFHYAALKLQLSTPEAIVTERRSLKIICEDHKQNSFTHHQSI 198 HSP 2 Score: 88.1965 bits (217), Expect = 1.230e-16 Identity = 32/74 (43.24%), Postives = 54/74 (72.97%), Query Frame = 1 Query: 841 PEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQRLSHLCLTPNYCVKGLVASWCEQNGVPI 1062 PE+ +C +S +MYDPVII+SG T+ER+ I+KWF +G+++CP ++++L L PN +K ++ WC +NG+ + Sbjct: 220 PEKFKCTLSRTVMYDPVIISSGNTFERMQIQKWFDEGNDSCPISKRKLDDFTLKPNVELKSQISEWCAKNGLDV 293
BLAST of rna-KK1_025163 vs. DB:Swiss
Match: PUB1_MEDTR (U-box domain-containing protein 1 OS=Medicago truncatula OX=3880 GN=PUB1 PE=1 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 5.643e-30 Identity = 169/692 (24.42%), Postives = 293/692 (42.34%), Query Frame = 1 Query: 121 EAARPRSKSGIQALCSLHVALEKVKNILQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEF---------ATIEFALDPSEKQVGDDLIALLQ----QGRKFSDSSDSNELESFHQAATRLGITSSRAALTERRALKKLIERARTEEDKRKESIVAYLLHLMRKYSKLFRSEFSDDNDSQGSSPCSPTVQGSIEDSVPGSHSQAFDRQISKLSCFNFKPNNSSKSGLMPLP-PEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQRLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPESLDLNYWGLVLXXXXXXXXXXXXXXXXCKLKGVQVVPLEESGISEESVENGTES--VSVQGEDTEQYFS------FLKVLTEENNWRRQCXXXXXXXXXXXXXXXARIFMGANGFVEALLQFLHSAVREGSLMALESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTSSYG---CTTALYLNLSCLEEAKPMIGMSQAVQFLIQLLQSDADVQCKQDSLHALYNLSTVPSNIPYLLSSGITSGLQSLLVGEGDCMWIEKSIAVLINLATSEVGREEILSTPGLISALASILDTGELLEQEQAVCCLLILCNRSETCSEMVLQEG--VIPALVSISVNGTPRGREKAQKLLMLF 2115 E+ P S I + + +VK ++Q C++ S L+ I D + +F L + R DI+P ++ Q+I + +E +DP E Q ++L ++ Q +K +++ + + +G+ + + E + KL A+ + +V+ + +LM S F +D +S+ P S F SK+ + ++S +M + P+E RCPISL LM DPVI++SG TY+R+ I +W + GH+ CPK+ QRL H L PNY +K LV WC +N V + E ++ + + + S++ S + K+ +V +G ++ ++ E ++ G D + + FL L + R Q VV L L D + M A G ++ +++ L ++ A E+ A A+++L++ ++ +I S+ + L ++ + + G TAL+ NL+ K I S AV L++LL D +GIT + S+AVL L G EEI ++ L+ L +L G + +E ++ LL LC M L IP+L S++ +G+ R R KA LL L Sbjct: 64 ESDSPLPPSSILCFIEIFSVITRVKVLIQECTDGSSLWSLIQLDFISNQF----FVLVKEMGRALDILPLNLLNVAQDIKEQVDLLHKQSKRVELELFIDPREVQRRENLFEVMSKNCLQNKKTNNNKGFIDFVKVEEIMCSIGLRTLSDYVEE---ISKLEVEAQNQAGTGGLIVVSNINNLMSLVSYTKSMVFRNDGESEECKPIS-----------------MFLYNKSKIHDNDSSSSSSFSQSMMTVNIPDEFRCPISLDLMRDPVIVSSGHTYDRISIAEWINSGHHTCPKSGQRLIHTALIPNYALKSLVHQWCYENNVKMNEAITKNNNSSSKRHKNENAIDHISENKASKDAVKMTAEFLVGKLATGSTDIQRQSAYEIRLLAKTGMDNRRIIAEVGAIPFLVTLLVSKDSRIQEHVVTALFNLSIYDNNKILIMAA-GAIDNIVEVLEFG---KTMEARENAAAAIYSLSMIDDCKVQIGASSRAIPALVGLLKEGTIIGKRDAATALF-NLAVYNPNKLSIVKSGAVTLLVELLMDD---------------------------KAGIT----------------DDSLAVLAVLLGCSEGLEEIKNSKSLVPLLIDLLRFGSVKGKENSITLLLGLCKEEGELVAMRLLANPRSIPSLQSLAADGSLRARRKADALLRLL 683 The following BLAST results are available for this feature:
BLAST of rna-KK1_025163 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_025163_Cc_Asha_v1.0 ID=rna-KK1_025163_Cc_Asha_v1.0; Name=rna-KK1_025163; organism=Cajanus cajan; type=mRNA; length=2337bpback to top protein sequence of rna-KK1_025163_Cc_Asha_v1.0 >rna-KK1_025163_Cc_Asha_v1.0 ID=rna-KK1_025163_Cc_Asha_v1.0; Name=rna-KK1_025163_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=778bpback to top mRNA from alignment at Scaffold136490-KQ483418.1:608354..612246+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_025163_Cc_Asha_v1.0 ID=rna-KK1_025163_Cc_Asha_v1.0; Name=rna-KK1_025163; organism=Cajanus cajan; type=mRNA; length=3893bp; location=Sequence derived from: Scaffold136490-KQ483418.1:608354..612246+ (Cajanus cajanback to top Coding sequence (CDS) from alignment at Scaffold136490-KQ483418.1:608354..612246+ >rna-KK1_025163_Cc_Asha_v1.0 ID=rna-KK1_025163_Cc_Asha_v1.0; Name=rna-KK1_025163; organism=Cajanus cajan; type=CDS; length=4674bp; location=Sequence derived from: Scaffold136490-KQ483418.1:608354..612246+ (Cajanus cajanback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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