Vigun09g271000.1

Transcript Overview
NameVigun09g271000.1
Unique NameVigun09g271000.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length294
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu09supercontigVu09:43338219..43338512 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuL110Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL179Pisum sativum Cameor genome v1aPisum sativum
psvuL515Pisum sativum Cameor genome v1aPisum sativum
psvuL809Pisum sativum Cameor genome v1aPisum sativum
psvuL810Pisum sativum Cameor genome v1aPisum sativum
pvvuL192Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL804Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caivuL0632Cicer arietinum ICC 4958 genome v2Cicer arietinum
ccvuL1029Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL1305Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0301Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0762Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1075Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1142Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL130Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL133Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL204Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL553Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR684Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR691Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR707Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL112Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvuL571Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvuL580Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL531Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvuL537Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL752Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL716Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL236Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL397Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vuvuaR463Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
carvuL410Cicer arietinum
vuvumR750Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR755Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR779Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR772Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR834Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL247Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL484Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL256Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL497Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL500Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL171Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL711Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR482Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR527Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Psat7g181080.1Pisum sativum Cameor genome v1aPisum sativum
rna-KK1_019562Cajanus cajan Asha genome v1.0Cajanus cajan
XM_058874137.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigan.02G012900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigst.02G007200.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-XM_014646062.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
PvulFLAVERTChr09.138Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Phvul.009G001600.2Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun11g183100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun09g271000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun09g271000Vigun09g271000_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g271000.1Vigun09g271000.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun09g271000.1_Vu_IT97K-499-35_v1.1Vigun09g271000.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g271000.1.v1.1.CDS.1Vigun09g271000.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


Homology
BLAST of Vigun09g271000.1 vs. DB:Swiss
Match: SAU20_ARATH (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.074e-35
Identity = 55/87 (63.22%), Postives = 67/87 (77.01%), Query Frame = 1
Query:   28 FGAKHILRRSNLAAATSLDVPKGYFAVYVGEGEKKRFVIPVSVLNQPSFQELLSIAEEEFGFNHPMGGLTIPCTQDIFDNITSGLHR 288
             GAK IL RS  AA+ +   PKG+ AVYVGE +KKR+++P+S LNQPSFQ LLS +EEEFGF+HPMGGLTIPC +D F N+TS   R
Sbjct:    8 LGAKKILSRSTTAASAA---PKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFINVTSRFQR 91          
BLAST of Vigun09g271000.1 vs. DB:Swiss
Match: SAU24_ARATH (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 4.104e-34
Identity = 55/86 (63.95%), Postives = 66/86 (76.74%), Query Frame = 1
Query:   28 FGAKHILRRSNLAAATSLDVPKGYFAVYVGEGEKKRFVIPVSVLNQPSFQELLSIAEEEFGFNHPMGGLTIPCTQDIFDNITSGLH 285
             GAK IL RS  A + +   PKG+ AVYVGE +KKR+++PVS LNQPSFQ LLS +EEEFGF+HPMGGLTIPC +D F N+TS L 
Sbjct:    8 LGAKKILSRSTGAGSAA---PKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFINVTSRLQ 90          
BLAST of Vigun09g271000.1 vs. DB:Swiss
Match: SAU23_ARATH (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana OX=3702 GN=SAUR23 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 5.339e-34
Identity = 57/84 (67.86%), Postives = 67/84 (79.76%), Query Frame = 1
Query:   34 AKHILRRSNLAAATSLDVPKGYFAVYVGEGEKKRFVIPVSVLNQPSFQELLSIAEEEFGFNHPMGGLTIPCTQDIFDNITSGLH 285
            AK IL RS  AAA S   PKG+ AVYVGE +KKR+++P+S LNQPSFQ LLS +EEEFGF+HPMGGLTIPC +D F N+TS LH
Sbjct:   10 AKKILSRS--AAAVSAP-PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFINVTSRLH 90          
BLAST of Vigun09g271000.1 vs. DB:Swiss
Match: SAU21_ARATH (Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana OX=3702 GN=SAUR21 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 7.155e-34
Identity = 54/86 (62.79%), Postives = 66/86 (76.74%), Query Frame = 1
Query:   28 FGAKHILRRSNLAAATSLDVPKGYFAVYVGEGEKKRFVIPVSVLNQPSFQELLSIAEEEFGFNHPMGGLTIPCTQDIFDNITSGLH 285
             GAK IL RS  +AA     PKG+ AVYVGE +KKR+++P+S L+QPSFQ LLS +EEEFGF+HPMGGLTIPC +D F N+TS L 
Sbjct:    8 LGAKKILSRSTASAA-----PKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFINVTSRLQ 88          
BLAST of Vigun09g271000.1 vs. DB:Swiss
Match: SAU22_ARATH (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana OX=3702 GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 8.742e-34
Identity = 53/86 (61.63%), Postives = 66/86 (76.74%), Query Frame = 1
Query:   28 FGAKHILRRSNLAAATSLDVPKGYFAVYVGEGEKKRFVIPVSVLNQPSFQELLSIAEEEFGFNHPMGGLTIPCTQDIFDNITSGLH 285
             GAK IL RS  A + +   PKG+ AVYVGE +KKR+++P+S LNQPSFQ LLS +E+EFGF+HPMGGLTIPC +D F N+TS L 
Sbjct:    8 LGAKKILSRSTAAVSAA---PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEFGFDHPMGGLTIPCHEDTFINVTSRLQ 90          
BLAST of Vigun09g271000.1 vs. DB:Swiss
Match: ARG7_VIGRR (Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata OX=3916 GN=ARG7 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.128e-33
Identity = 58/93 (62.37%), Postives = 68/93 (73.12%), Query Frame = 1
Query:    4 MAIRFPTSFGAKHILRRSNLAAATSLDVPKGYFAVYVGEGEKKRFVIPVSVLNQPSFQELLSIAEEEFGFNHPMGGLTIPCTQDIFDNITSGL 282
            M  R P   G +  L   N A++  LD PKGY AVYVGE   KRFVIPVS LNQP FQ+LLS AEEEFG++HPMGGLTIPC++D+F +ITS L
Sbjct:    1 MGFRLP---GIRKTLSARNEASSKVLDAPKGYLAVYVGEN-MKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQHITSCL 89          
BLAST of Vigun09g271000.1 vs. DB:Swiss
Match: SAU19_ARATH (Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana OX=3702 GN=SAUR19 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.426e-33
Identity = 53/86 (61.63%), Postives = 65/86 (75.58%), Query Frame = 1
Query:   28 FGAKHILRRSNLAAATSLDVPKGYFAVYVGEGEKKRFVIPVSVLNQPSFQELLSIAEEEFGFNHPMGGLTIPCTQDIFDNITSGLH 285
             GAK IL RS  A + +   PKG+ AVYVGE +KKR+++P+S L+QPSFQ LLS +EEEFGF HPMGGLTIPC +D F N+TS L 
Sbjct:    8 LGAKKILSRSTAAGSAA---PKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFAHPMGGLTIPCPEDTFINVTSRLQ 90          
BLAST of Vigun09g271000.1 vs. DB:Swiss
Match: AX15A_SOYBN (Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.951e-32
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   67 AATSLDVPKGYFAVYVGEGEKKRFVIPVSVLNQPSFQELLSIAEEEFGFNHPMGGLTIPCTQDIFDNITSGLH 285
            A+ + D PKGY AVYVGE + KRFVIPVS LNQPSFQ+LLS AEEEFG++HPMGGLTIPC++D+F  ITS L+
Sbjct:   11 ASKAADAPKGYLAVYVGE-KLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQCITSCLN 82          
BLAST of Vigun09g271000.1 vs. DB:Swiss
Match: AX6B_SOYBN (Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.432e-31
Identity = 54/94 (57.45%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    4 MAIRFPTSFGAKHILRRSNLAAATSLDVPKGYFAVYVGEGEKKRFVIPVSVLNQPSFQELLSIAEEEFGFNHPMGGLTIPCTQDIFDNITSGLH 285
            M  R P   G +     +N A++ ++DV KGY AVYVGE + +RFVIPVS LN+PSFQ+LLS AEEEFG++HP GGLTIPC++D+F +ITS L+
Sbjct:    1 MGFRLP---GIRKASFSANQASSKAVDVEKGYLAVYVGE-KMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHITSFLN 90          
BLAST of Vigun09g271000.1 vs. DB:Swiss
Match: A10A5_SOYBN (Auxin-induced protein 10A5 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.252e-31
Identity = 53/87 (60.92%), Postives = 69/87 (79.31%), Query Frame = 1
Query:   43 ILRRSNL----AAATSLDVPKGYFAVYVGEGEKKRFVIPVSVLNQPSFQELLSIAEEEFGFNHPMGGLTIPCTQDIFDNITSGLHRL 291
            I+RR++     AA+  +DVPKGY AVYVG+ + +RF IPVS LN+PSFQELLS AEEEFG++HPMGGLTIPC ++ F N+T+ L+ L
Sbjct:    8 IVRRTSFYTTQAASKRVDVPKGYAAVYVGD-KMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEEFLNVTAHLNEL 93          
The following BLAST results are available for this feature:
BLAST of Vigun09g271000.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
SAU20_ARATH2.074e-3563.22Auxin-responsive protein SAUR20 OS=Arabidopsis tha... [more]
SAU24_ARATH4.104e-3463.95Auxin-responsive protein SAUR24 OS=Arabidopsis tha... [more]
SAU23_ARATH5.339e-3467.86Auxin-responsive protein SAUR23 OS=Arabidopsis tha... [more]
SAU21_ARATH7.155e-3462.79Auxin-responsive protein SAUR21 OS=Arabidopsis tha... [more]
SAU22_ARATH8.742e-3461.63Auxin-responsive protein SAUR22 OS=Arabidopsis tha... [more]
ARG7_VIGRR1.128e-3362.37Indole-3-acetic acid-induced protein ARG7 OS=Vigna... [more]
SAU19_ARATH4.426e-3361.63Auxin-responsive protein SAUR19 OS=Arabidopsis tha... [more]
AX15A_SOYBN5.951e-3271.23Auxin-induced protein 15A OS=Glycine max OX=3847 P... [more]
AX6B_SOYBN5.432e-3157.45Auxin-induced protein 6B OS=Glycine max OX=3847 PE... [more]
A10A5_SOYBN6.252e-3160.92Auxin-induced protein 10A5 OS=Glycine max OX=3847 ... [more]
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003676Small auxin-up RNAPFAMPF02519Auxin_induciblecoord: 20..92
e-value: 4.4E-24
score: 84.5

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun09g271000.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g271000.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g271000.1; organism=Vigna unguiculata; type=mRNA; length=294bp
ATGATGGCTATTCGTTTTCCAACTTCCTTCGGTGCCAAACACATCCTTCG
CAGATCTAATCTGGCAGCTGCAACATCACTCGATGTGCCTAAAGGGTACT
TTGCTGTGTACGTAGGAGAGGGTGAAAAGAAGAGATTTGTGATACCAGTG
TCAGTGTTGAATCAACCCTCGTTTCAAGAACTGTTAAGTATAGCAGAGGA
AGAATTTGGATTCAATCATCCAATGGGTGGCCTTACCATTCCATGCACAC
AAGATATTTTTGATAACATCACCTCTGGCTTACATAGGCTATGA
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protein sequence of Vigun09g271000.1_Vu_IT97K-499-35_v1.1

>Vigun09g271000.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g271000.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g271000.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=98bp
MMAIRFPTSFGAKHILRRSNLAAATSLDVPKGYFAVYVGEGEKKRFVIPV
SVLNQPSFQELLSIAEEEFGFNHPMGGLTIPCTQDIFDNITSGLHRL*
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mRNA from alignment at Vu09:43338219..43338512-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun09g271000.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g271000.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g271000.1; organism=Vigna unguiculata; type=mRNA; length=294bp; location=Sequence derived from: Vu09:43338219..43338512- (Vigna unguiculata
ATGATGGCTATTCGTTTTCCAACTTCCTTCGGTGCCAAACACATCCTTCG CAGATCTAATCTGGCAGCTGCAACATCACTCGATGTGCCTAAAGGGTACT TTGCTGTGTACGTAGGAGAGGGTGAAAAGAAGAGATTTGTGATACCAGTG TCAGTGTTGAATCAACCCTCGTTTCAAGAACTGTTAAGTATAGCAGAGGA AGAATTTGGATTCAATCATCCAATGGGTGGCCTTACCATTCCATGCACAC AAGATATTTTTGATAACATCACCTCTGGCTTACATAGGCTATGA
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Coding sequence (CDS) from alignment at Vu09:43338219..43338512-

>Vigun09g271000.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g271000.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g271000.1; organism=Vigna unguiculata; type=CDS; length=294bp; location=Sequence derived from: Vu09:43338219..43338512- (Vigna unguiculata
ATGATGGCTATTCGTTTTCCAACTTCCTTCGGTGCCAAACACATCCTTCG
CAGATCTAATCTGGCAGCTGCAACATCACTCGATGTGCCTAAAGGGTACT
TTGCTGTGTACGTAGGAGAGGGTGAAAAGAAGAGATTTGTGATACCAGTG
TCAGTGTTGAATCAACCCTCGTTTCAAGAACTGTTAAGTATAGCAGAGGA
AGAATTTGGATTCAATCATCCAATGGGTGGCCTTACCATTCCATGCACAC
AAGATATTTTTGATAACATCACCTCTGGCTTACATAGGCTATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003676SAUR_fam
Vocabulary: Biological Process
TermDefinition
GO:0009733response to auxin