Vigun01g013600.1

Transcript Overview
NameVigun01g013600.1
Unique NameVigun01g013600.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length417
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu01supercontigVu01:1532164..1532659 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun01g013600Vigun01g013600_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g013600.1Vigun01g013600.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun01g013600.1_Vu_IT97K-499-35_v1.1Vigun01g013600.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g013600.1.v1.1.CDS.1Vigun01g013600.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun01g013600.1.v1.1.CDS.2Vigun01g013600.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


Homology
The following BLAST results are available for this feature:
BLAST of Vigun01g013600.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010666Zinc finger, GRF-typePFAMPF06839zf-GRFcoord: 35..83
e-value: 9.8E-11
score: 41.6

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun01g013600.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g013600.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g013600.1; organism=Vigna unguiculata; type=mRNA; length=417bp
ATGTCGCGTGGTTTTAGTCATCCATTGTCGTCTTGTTCGTGTGGGTCACG
TAATCACAGTGTTTCTTCTCCTGGTACTGTATCTGGGTCAGTGAGTGGAA
CACCACATTGCCATTGCGGGGAGATTGCAGTGTTAAGAGTTGCAAGAACA
GCGAAGAATTGTGGGAAACAATTTTGGGGGTGCCCTCACTACAAGCGGAG
TGTTGGTGAAGATTTCAAAGCCTGCAACTACTTCAAATGGTGCACAGAAG
ATAATGGGGATGAAAGAGATGCAACCATTGCTAGACAAAGTCAAAGAATA
CGTCAACTGGAGAAAGATTTGATTGATTCTGAGAAGTGGATGATGTACTT
GTTTAGGATAATAGGGTTGTTGGGTTTAATTGTGATCCTTCTTCTGTTTG
TATTGTTAAAAAAATAG
back to top

protein sequence of Vigun01g013600.1_Vu_IT97K-499-35_v1.1

>Vigun01g013600.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g013600.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g013600.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=139bp
MSRGFSHPLSSCSCGSRNHSVSSPGTVSGSVSGTPHCHCGEIAVLRVART
AKNCGKQFWGCPHYKRSVGEDFKACNYFKWCTEDNGDERDATIARQSQRI
RQLEKDLIDSEKWMMYLFRIIGLLGLIVILLLFVLLKK*
back to top

mRNA from alignment at Vu01:1532164..1532659+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun01g013600.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g013600.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g013600.1; organism=Vigna unguiculata; type=mRNA; length=496bp; location=Sequence derived from: Vu01:1532164..1532659+ (Vigna unguiculata
ATGTCGCGTGGTTTTAGTCATCCATTGTCGTCTTGTTCGTGTGGGTCACG
TAATCACAGTGTTTCTTCTCCTGGTACTGTATCTGGGTCAGTGAGTGGAA
CACCACATTGCCATTGCGGGGAGATTGCAGTGTTAAGAGTTGCAAGAACA
GCGAAGAATTGTGGGAAACAATTTTGGGGGTGCCCTCACTACAAGGTTTG
ATATGTGACTTTTATTTTTGTTCGGGCTGAGTTTTGTTGTGGAAAATCAT
GTTTGCTTTGTTTTTTGTGAATAGCGGAGTGTTGGTGAAGATTTCAAAGC
CTGCAACTACTTCAAATGGTGCACAGAAGATAATGGGGATGAAAGAGATG
CAACCATTGCTAGACAAAGTCAAAGAATACGTCAACTGGAGAAAGATTTG
ATTGATTCTGAGAAGTGGATGATGTACTTGTTTAGGATAATAGGGTTGTT
GGGTTTAATTGTGATCCTTCTTCTGTTTGTATTGTTAAAAAAATAG
back to top

Coding sequence (CDS) from alignment at Vu01:1532164..1532659+

>Vigun01g013600.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g013600.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g013600.1; organism=Vigna unguiculata; type=CDS; length=417bp; location=Sequence derived from: Vu01:1532164..1532659+ (Vigna unguiculata
ATGTCGCGTGGTTTTAGTCATCCATTGTCGTCTTGTTCGTGTGGGTCACG
TAATCACAGTGTTTCTTCTCCTGGTACTGTATCTGGGTCAGTGAGTGGAA
CACCACATTGCCATTGCGGGGAGATTGCAGTGTTAAGAGTTGCAAGAACA
GCGAAGAATTGTGGGAAACAATTTTGGGGGTGCCCTCACTACAAGCGGAG
TGTTGGTGAAGATTTCAAAGCCTGCAACTACTTCAAATGGTGCACAGAAG
ATAATGGGGATGAAAGAGATGCAACCATTGCTAGACAAAGTCAAAGAATA
CGTCAACTGGAGAAAGATTTGATTGATTCTGAGAAGTGGATGATGTACTT
GTTTAGGATAATAGGGTTGTTGGGTTTAATTGTGATCCTTCTTCTGTTTG
TATTGTTAAAAAAATAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR010666Znf_GRF
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding