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Transcript Overview
Name | Vigun01g016700.5 |
Unique Name | Vigun01g016700.5_Vu_IT97K-499-35_v1.1 |
Type | mRNA |
Organism | Vigna unguiculata (cowpea) |
Sequence length | 1549 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun01g016700.5 | Vigun01g016700.5_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
Vigun01g016700.5_Vu_IT97K-499-35_v1.1 | Vigun01g016700.5_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun01g016700.5.v1.1.CDS.2 | Vigun01g016700.5.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun01g016700.5.v1.1.CDS.1 | Vigun01g016700.5.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun01g016700.5.v1.1.three_prime_UTR.1 | Vigun01g016700.5.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun01g016700.5.v1.1.five_prime_UTR.3 | Vigun01g016700.5.v1.1.five_prime_UTR.3_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
Vigun01g016700.5.v1.1.five_prime_UTR.2 | Vigun01g016700.5.v1.1.five_prime_UTR.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
Vigun01g016700.5.v1.1.five_prime_UTR.1 | Vigun01g016700.5.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR005484 | Ribosomal protein L18 | PFAM | PF00861 | Ribosomal_L18p | coord: 66..181 e-value: 6.5E-8 score: 32.9 |
IPR036967 | Ribosomal protein S11 superfamily | GENE3D | 3.30.420.80 | | coord: 59..184 e-value: 1.4E-13 score: 52.9 |
None | No IPR available | CDD | cd00432 | Ribosomal_L18_L5e | coord: 78..180 e-value: 1.54046E-20 score: 79.8915 |
None | No IPR available | SUPERFAMILY | 53137 | Translational machinery components | coord: 79..180 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g016700.5_Vu_IT97K-499-35_v1.1 ID=Vigun01g016700.5_Vu_IT97K-499-35_v1.1; Name=Vigun01g016700.5; organism=Vigna unguiculata; type=mRNA; length=1549bp AAATTTAAATGCTTTTAAGACAGTAAAAAAGTAAAGATATTTTTGGTGGA TAATAAACATGTTATTTATCCATTGTGGTTTAGATGACTAATTGCTCTTC GAATTTGTGGGTATAGGAACACGCCATTGAAGCTCATTCAACATTCCACA CAGGGGCAGAACTTTGGCCATATTGGATGCAATGCTTCACTGGGGAAAAT CTTGTTTTTACACATGATGCTGTGTAAGGCTGAACCCTTTTTCTGGGTCT TGTAGTGATTTCTTCTTTTGGATAGAAAACACAGGTTTCTGATTGGAGAA TGAACACAATTTTTATGCATTTCAACAAAACAGCCAAGTGCCTAAATCTC ATTTCTGGTGATCTCAGATCACTCTGGCTTCAATTCTGTCTGGTGAAGAC AGTCGAAACTTAAAACGACCTTAGAAAGACACCAACACAATCCTGTATTC CATAGGCTGTAGCAAGCTTCAGCTAGTTAAGAGGGGATTTAGGGTTCCAG GAAACATGTTGAAACAAGCAATTGGCAGAACTTGCAGAACCAGTGCTCAT GCTTTTGAAGGAAACAGAGTTTTGCCTTGGATATATGTGCCTTCGTGCTT TTTCCACAATGGACAGGCACATATGGCACCTAGAAGCTTTTTTGGGGTAG AGGATTTCCTCGATGATGACAATAGTCGACCTTACACATACCAAAAAGGG AAGAAATCAAAGAATCCAAACAAGCACATATCTTTCAAACAAAGAACGAT TGCGTACATGGAGCCGTTTACACTTGATGTGTTTATCTCAAAACGCTTTG TATCAGCTTCACTCACTCATAGGGTGACAAGCAAACAGGTTGCAGTTGCT GGTACCAACTCCAAGGACATAAAAGCTGTTCTTAGGTCTCGGTCAGACAT ACCAGCATGCATATCCATCGGCAAGATTTTATCTGAAAGAGCAAGAGAAG CTGATGTTTACACTGCTTCCTACACTCCAAGGGAAAGGGACAAGTTTGAA GGGAAAATCAGAGCTGTAGTTCAATCACTCATTGATAATGGGATTGATAT CAAGGTTTACCTTGATTGAGTTGAGTAGTAACTCAAGATTTTGTGGCTAT CAATTTGATATCAATTGGTGATTACTGGTTTGGTTTTGTGGCTAGTTAGT TACCATATGCTGCTTTGATGGATAGGAAGATGGAGAAGCATTGTTTAGGG CTAGTAATTTGGGGAAATTATGCATGAACAAAGAAAGATCTTTCAAACTC GTGCATGCAATATGATAACTCCTGATTTCACTGTAACCTTAGAGGCTAAA GGGGTTTGTGTGCTGCTCAACATTTGTCATCTTCTATTTGTCGTTTCCTC CCTTTCACTTATTTAGCAGTGagaggtgtcaaagtgagtcaacctgactc acacgagttggcccattacgggttgaactacaaaaacatcgactcaaacc gtctcactttttggtgagtcaaaaattttgcaattttgcaattcggcttg acccattacggattgatgagttgatgggttagttcacttacgtgtgtgt back to topprotein sequence of Vigun01g016700.5_Vu_IT97K-499-35_v1.1 >Vigun01g016700.5_Vu_IT97K-499-35_v1.1 ID=Vigun01g016700.5_Vu_IT97K-499-35_v1.1; Name=Vigun01g016700.5_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=188bp MLKQAIGRTCRTSAHAFEGNRVLPWIYVPSCFFHNGQAHMAPRSFFGVED FLDDDNSRPYTYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVS ASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACISIGKILSERAREAD VYTASYTPRERDKFEGKIRAVVQSLIDNGIDIKVYLD* back to topmRNA from alignment at Vu01:1826894..1831007- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun01g016700.5_Vu_IT97K-499-35_v1.1 ID=Vigun01g016700.5_Vu_IT97K-499-35_v1.1; Name=Vigun01g016700.5; organism=Vigna unguiculata; type=mRNA; length=4114bp; location=Sequence derived from: Vu01:1826894..1831007- (Vigna unguiculata AAATTTAAATGCTTTTAAGACAGTAAAAAAGTAAAGATATTTTTGGTGGA
TAATAAACATGTTATTTATCCATTGTGGTTTAGATGACTAATTGCTCTTC
GAATTTGTGGGTATAGGAACACGCCATTGAAGCTCATTCAACATTCCACA
CAGGGGCAGGTAAATGGGTGATTGTTATTACTTTTTGTTTTCACGTTTCT
CTTGTGATTATTGGCTTCAAAGATGGTGTCTCGTTGGTTTTGATAGATTG
GTTAAAGGCTCGGAGTGGTCATAGGACTACTTAGTAACTAGGTTGGTTTA
AGGGGCAAATGGGCATTTTTCTTTTTGCCTGTTGTGTGACAAGATCGTGA
CTTTGTGTTTTGGTCACCAGGTGTTTGATAAAATGTTTGACTGACAATTG
CAATATGTTATTGCTTTGATGCGAAGAAAGTTTGTTGCCAATGCAAATTC
CAGTTTGGTTGGTTTGTTTTTGTTGATAGTGGTTTTTTTTTGTCCGGTAA
AATGTTTAGCTATGATCAGTGCTTATGTGGTATTTGGTTTATTGCATAAG
TTTGCGAGCTGTCACCTTTTCCATTTTGTGGTTTGAATTATAGTATTGGT
TTTGTTCATGTGAGAACTATGTTGCACGGGTATGGGGATTGGGTGGTTGT
ATGCTGTAATTCTGAAATTGTTGATTCCGTTTAAAGTTGTTGTCCTTTCC
GTGAGAGGTATGTGGTAAGAAGAAAGCTTTCAGTTTCTCAGGAAAAACAC
AGAGGCTTTGGGTTGTTGTATTGTAGGTGTTTCAATTTCAGTCACAGAGG
CTCTGTGCCTTTTCATCCTCGTCCCTCTCTTTCTATCTCTCTCTCTAAGG
CTTTGGCATGGATTGCTTTTAGTCTGTCCTTTAGTATTGATGTGGAAAAG
CTGTGTTAGCTACCTGCAGAGTTTTTTCTTGTGCTAATTTTAGTTTATTT
TTACAAATTTTTTTAGTGGAGTTAGGGTTTCGTTTTTTGAATATTTTGAG
TGACATTTGAATTGCTACTGGCATCCTTCAGAACTTTGGCCATATTGGAT
GCAATGCTTCACTGGGGAAAATCTTGTTTTTACACATGATGCTGTGTAAG
GCTGAACCCTTTTTCTGGGTCTTGTAGTGATTTCTTCTTTTGGATAGAAA
ACACAGGTTTCTGATTGGAGAATGAACACAATTTTTATGCATTTCAACAA
AACAGCCAAGTGCCTAAATCTCATTTCTGGTGATCTCAGATCACTCTGGC
TTCAATTCTGGTTAGTCCACTGCACTCTTGCAGAATTTTTGGAAAGTCAG
TGCTCCTTACATCTTTGCAGTCAAAATTGTGATATTCCTCATATGATTAC
TCAATTTCACTAGTTTTTATCTTAGCTGCTATCCTGATCTCCCTAAAAAA
CTAATCTAGTAGGGTTGCACGATCTTAAGTGTTGAATTAGTGTTATTGAT
GATCCCTTTGTGCAACTCACAAGGATATCTTTAGAAGTGATTCATCTGCA
AACAACCCTTGAACTTTATTTCCTTATATTTTGATATCCATTTATATTTT
CTCTATTTTATTTACTTTTTTGAATGCCTGTGCACGTCTGAATTAATAGA
TAAATTCATCACAGCCCTTAATTATCTTTTCTCCCTGTTATGTCACTCAA
GGTCAACCTTTAGGTGTTTAGGTAGATATATGAATATACTGTGGACATGG
TCTTAACTCTTAAGCATTTATCTTTGCTTCTCAAAGTAATTAAATACCCA
TGAAAAAGTGCATCTGATATTAGAGTTTACACATACCGTGGTTAGAGCTT
CATAAACTTGACTCGTACGTTAGAATCGTAAACTTGTAAGAGTTTGCTTT
GTATAAAAATGTATTAAAATATCTGTCAATAATATAATAATTTAATATTA
TATGTAATATATTATGCTATAAATAATTTTTGTATTTTTTTACTATTTTT
CTATTATCAGTTGATTGTATTATTTAATAGTTTTTTTATATTTTTCTAAT
ATTATTATACTTCTATCATTACTCTTTAGTTGATATATTATATGTATTAT
GTTCTGCATAAAAGAATGTTTTTGGACTTAAAGTGAGCCCCAACAATCCA
AAATGTCAGCAAGAGAAGATTAAAAACACGCATAAACTCTAATAGGACCC
AACTCACTAATTTTGTAGCCCAGTCTGGTGAAGACAGTCGAAACTTAAAA
CGACCTTAGAAAGACACCAACACAATCCTGTATTCCATAGGCTGTAGCAA
GCTTCAGCTAGTTAAGAGGGGATTTAGGGTTCCAGGAAACATGTTGAAAC
AAGCAATTGGCAGAACTTGCAGAACCAGTGCTCATGCTTTTGAAGGAAAC
AGAGTTTTGCCTTGGATATATGTGCCTTCGTGCTTTTTCCACAATGGACA
GGTAAAGTCTCTTATTCAAAGCACAATTTAAATTATTTTTTCAATATTTT
TCTGTAGAATTTCCTTTTTGTCTGTTTAATAAATTATAGAATTTGGTTGA
ATCTTGATTTAAGTTTCCCACTTTGGGGGAAACTTCATTGGTTTATGTGT
CAAAAACAAATGATAATGTACACTCGATTTTCATTTTGTTTCAAGTAATA
TGGTGTGATGGGCATTACTGCCTTTAATTGAAATAATTCCTTTCATAGAT
AAATTAGATAATCAGATGCTAAGCTTCAAACAAAGTATGAAATCCTGAAG
CTTATAAAGTTGTACAGGGTTAAATTGGCCTGTGATAATAAATAATTTCT
TTAGCTTTTGCATATAGCTTGGAATGAGCCTAAGTTTAATAGAAGAAATC
AAGTTTGGAAGGTCTACTACAGGAGGAATAAAATTCAGTAGTTTAGGTTT
GTGACAAACCATAACAGATGATATTATTGTGTGATATTAAAGGGCCCTGA
TTTTAAATTATTGTGAGGGGCATTGGTTGATAGTTGGAAGGGAAAAGGAT
CTATGTTGTACAACAGTTAGTTAGAGATTATTCAGCACTAGTGTGAATTC
ATTGATCCCACATATATGTGTAGTGTAATCAACTACCTAGTATAGTTTTA
CCATTCCAAGTAGCTTGTGTGGATTTTATCCAATTGAAAAATAAAGTTGA
ACAAGCCTAAAATGCCAATTTGAGGTGAATCATTTGTGTAGTATTATTAA
TACTCATTTTTAATTCATTTATTTTATACAGGCACATATGGCACCTAGAA
GCTTTTTTGGGGTAGAGGATTTCCTCGATGATGACAATAGTCGACCTTAC
ACATACCAAAAAGGGAAGAAATCAAAGAATCCAAACAAGCACATATCTTT
CAAACAAAGAACGATTGCGTACATGGAGCCGTTTACACTTGATGTGTTTA
TCTCAAAACGCTTTGTATCAGCTTCACTCACTCATAGGGTGACAAGCAAA
CAGGTTGCAGTTGCTGGTACCAACTCCAAGGACATAAAAGCTGTTCTTAG
GTCTCGGTCAGACATACCAGCATGCATATCCATCGGCAAGATTTTATCTG
AAAGAGCAAGAGAAGCTGATGTTTACACTGCTTCCTACACTCCAAGGGAA
AGGGACAAGTTTGAAGGGAAAATCAGAGCTGTAGTTCAATCACTCATTGA
TAATGGGATTGATATCAAGGTTTACCTTGATTGAGTTGAGTAGTAACTCA
AGATTTTGTGGCTATCAATTTGATATCAATTGGTGATTACTGGTTTGGTT
TTGTGGCTAGTTAGTTACCATATGCTGCTTTGATGGATAGGAAGATGGAG
AAGCATTGTTTAGGGCTAGTAATTTGGGGAAATTATGCATGAACAAAGAA
AGATCTTTCAAACTCGTGCATGCAATATGATAACTCCTGATTTCACTGTA
ACCTTAGAGGCTAAAGGGGTTTGTGTGCTGCTCAACATTTGTCATCTTCT
ATTTGTCGTTTCCTCCCTTTCACTTATTTAGCAGTGAGAGGTGTCAAAGT
GAGTCAACCTGACTCACACGAGTTGGCCCATTACGGGTTGAACTACAAAA
ACATCGACTCAAACCGTCTCACTTTTTGGTGAGTCAAAAATTTTGCAATT
TTGCAATTCGGCTTGACCCATTACGGATTGATGAGTTGATGGGTTAGTTC
ACTTACGTGTGTGT back to topCoding sequence (CDS) from alignment at Vu01:1826894..1831007- >Vigun01g016700.5_Vu_IT97K-499-35_v1.1 ID=Vigun01g016700.5_Vu_IT97K-499-35_v1.1; Name=Vigun01g016700.5; organism=Vigna unguiculata; type=CDS; length=564bp; location=Sequence derived from: Vu01:1826894..1831007- (Vigna unguiculata ATGTTGAAACAAGCAATTGGCAGAACTTGCAGAACCAGTGCTCATGCTTT TGAAGGAAACAGAGTTTTGCCTTGGATATATGTGCCTTCGTGCTTTTTCC ACAATGGACAGGCACATATGGCACCTAGAAGCTTTTTTGGGGTAGAGGAT TTCCTCGATGATGACAATAGTCGACCTTACACATACCAAAAAGGGAAGAA ATCAAAGAATCCAAACAAGCACATATCTTTCAAACAAAGAACGATTGCGT ACATGGAGCCGTTTACACTTGATGTGTTTATCTCAAAACGCTTTGTATCA GCTTCACTCACTCATAGGGTGACAAGCAAACAGGTTGCAGTTGCTGGTAC CAACTCCAAGGACATAAAAGCTGTTCTTAGGTCTCGGTCAGACATACCAG CATGCATATCCATCGGCAAGATTTTATCTGAAAGAGCAAGAGAAGCTGAT GTTTACACTGCTTCCTACACTCCAAGGGAAAGGGACAAGTTTGAAGGGAA AATCAGAGCTGTAGTTCAATCACTCATTGATAATGGGATTGATATCAAGG TTTACCTTGATTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: Biological Process
Term | Definition |
GO:0006412 | translation |
Vocabulary: Cellular Component
Term | Definition |
GO:0005840 | ribosome |
Vocabulary: Molecular Function
Term | Definition |
GO:0003735 | structural constituent of ribosome |
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