Vigun01g016700.5

Transcript Overview
NameVigun01g016700.5
Unique NameVigun01g016700.5_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length1549
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu01supercontigVu01:1826894..1831007 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuR009Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL389Pisum sativum Cameor genome v1aPisum sativum
pvvuL134Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL468Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL358Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0517Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavuL580Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anvuL0254Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0781Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL568Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR027Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR039Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL218Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL192Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL471Vicia faba cv. Tiffany genome v1.0Vicia faba
vrvvuL327Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL609Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL618Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR001Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR006Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL325Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL537Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL044Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL495Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL338Cicer arietinum
carvuL535Cicer arietinum
ccavuL073Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL357Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR050Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR063Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR017Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL452Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL490Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL472Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL509Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL399Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR000Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR008Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun01g016700Vigun01g016700_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g016700.5Vigun01g016700.5_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun01g016700.5_Vu_IT97K-499-35_v1.1Vigun01g016700.5_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g016700.5.v1.1.CDS.2Vigun01g016700.5.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun01g016700.5.v1.1.CDS.1Vigun01g016700.5.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g016700.5.v1.1.three_prime_UTR.1Vigun01g016700.5.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g016700.5.v1.1.five_prime_UTR.3Vigun01g016700.5.v1.1.five_prime_UTR.3_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR
Vigun01g016700.5.v1.1.five_prime_UTR.2Vigun01g016700.5.v1.1.five_prime_UTR.2_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR
Vigun01g016700.5.v1.1.five_prime_UTR.1Vigun01g016700.5.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Vigun01g016700.5 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005484Ribosomal protein L18PFAMPF00861Ribosomal_L18pcoord: 66..181
e-value: 6.5E-8
score: 32.9
IPR036967Ribosomal protein S11 superfamilyGENE3D3.30.420.80coord: 59..184
e-value: 1.4E-13
score: 52.9
NoneNo IPR availableCDDcd00432Ribosomal_L18_L5ecoord: 78..180
e-value: 1.54046E-20
score: 79.8915
NoneNo IPR availableSUPERFAMILY53137Translational machinery componentscoord: 79..180

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun01g016700.5_Vu_IT97K-499-35_v1.1 ID=Vigun01g016700.5_Vu_IT97K-499-35_v1.1; Name=Vigun01g016700.5; organism=Vigna unguiculata; type=mRNA; length=1549bp
AAATTTAAATGCTTTTAAGACAGTAAAAAAGTAAAGATATTTTTGGTGGA
TAATAAACATGTTATTTATCCATTGTGGTTTAGATGACTAATTGCTCTTC
GAATTTGTGGGTATAGGAACACGCCATTGAAGCTCATTCAACATTCCACA
CAGGGGCAGAACTTTGGCCATATTGGATGCAATGCTTCACTGGGGAAAAT
CTTGTTTTTACACATGATGCTGTGTAAGGCTGAACCCTTTTTCTGGGTCT
TGTAGTGATTTCTTCTTTTGGATAGAAAACACAGGTTTCTGATTGGAGAA
TGAACACAATTTTTATGCATTTCAACAAAACAGCCAAGTGCCTAAATCTC
ATTTCTGGTGATCTCAGATCACTCTGGCTTCAATTCTGTCTGGTGAAGAC
AGTCGAAACTTAAAACGACCTTAGAAAGACACCAACACAATCCTGTATTC
CATAGGCTGTAGCAAGCTTCAGCTAGTTAAGAGGGGATTTAGGGTTCCAG
GAAACATGTTGAAACAAGCAATTGGCAGAACTTGCAGAACCAGTGCTCAT
GCTTTTGAAGGAAACAGAGTTTTGCCTTGGATATATGTGCCTTCGTGCTT
TTTCCACAATGGACAGGCACATATGGCACCTAGAAGCTTTTTTGGGGTAG
AGGATTTCCTCGATGATGACAATAGTCGACCTTACACATACCAAAAAGGG
AAGAAATCAAAGAATCCAAACAAGCACATATCTTTCAAACAAAGAACGAT
TGCGTACATGGAGCCGTTTACACTTGATGTGTTTATCTCAAAACGCTTTG
TATCAGCTTCACTCACTCATAGGGTGACAAGCAAACAGGTTGCAGTTGCT
GGTACCAACTCCAAGGACATAAAAGCTGTTCTTAGGTCTCGGTCAGACAT
ACCAGCATGCATATCCATCGGCAAGATTTTATCTGAAAGAGCAAGAGAAG
CTGATGTTTACACTGCTTCCTACACTCCAAGGGAAAGGGACAAGTTTGAA
GGGAAAATCAGAGCTGTAGTTCAATCACTCATTGATAATGGGATTGATAT
CAAGGTTTACCTTGATTGAGTTGAGTAGTAACTCAAGATTTTGTGGCTAT
CAATTTGATATCAATTGGTGATTACTGGTTTGGTTTTGTGGCTAGTTAGT
TACCATATGCTGCTTTGATGGATAGGAAGATGGAGAAGCATTGTTTAGGG
CTAGTAATTTGGGGAAATTATGCATGAACAAAGAAAGATCTTTCAAACTC
GTGCATGCAATATGATAACTCCTGATTTCACTGTAACCTTAGAGGCTAAA
GGGGTTTGTGTGCTGCTCAACATTTGTCATCTTCTATTTGTCGTTTCCTC
CCTTTCACTTATTTAGCAGTGagaggtgtcaaagtgagtcaacctgactc
acacgagttggcccattacgggttgaactacaaaaacatcgactcaaacc
gtctcactttttggtgagtcaaaaattttgcaattttgcaattcggcttg
acccattacggattgatgagttgatgggttagttcacttacgtgtgtgt
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protein sequence of Vigun01g016700.5_Vu_IT97K-499-35_v1.1

>Vigun01g016700.5_Vu_IT97K-499-35_v1.1 ID=Vigun01g016700.5_Vu_IT97K-499-35_v1.1; Name=Vigun01g016700.5_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=188bp
MLKQAIGRTCRTSAHAFEGNRVLPWIYVPSCFFHNGQAHMAPRSFFGVED
FLDDDNSRPYTYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVS
ASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACISIGKILSERAREAD
VYTASYTPRERDKFEGKIRAVVQSLIDNGIDIKVYLD*
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mRNA from alignment at Vu01:1826894..1831007-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun01g016700.5_Vu_IT97K-499-35_v1.1 ID=Vigun01g016700.5_Vu_IT97K-499-35_v1.1; Name=Vigun01g016700.5; organism=Vigna unguiculata; type=mRNA; length=4114bp; location=Sequence derived from: Vu01:1826894..1831007- (Vigna unguiculata
AAATTTAAATGCTTTTAAGACAGTAAAAAAGTAAAGATATTTTTGGTGGA
TAATAAACATGTTATTTATCCATTGTGGTTTAGATGACTAATTGCTCTTC
GAATTTGTGGGTATAGGAACACGCCATTGAAGCTCATTCAACATTCCACA
CAGGGGCAGGTAAATGGGTGATTGTTATTACTTTTTGTTTTCACGTTTCT
CTTGTGATTATTGGCTTCAAAGATGGTGTCTCGTTGGTTTTGATAGATTG
GTTAAAGGCTCGGAGTGGTCATAGGACTACTTAGTAACTAGGTTGGTTTA
AGGGGCAAATGGGCATTTTTCTTTTTGCCTGTTGTGTGACAAGATCGTGA
CTTTGTGTTTTGGTCACCAGGTGTTTGATAAAATGTTTGACTGACAATTG
CAATATGTTATTGCTTTGATGCGAAGAAAGTTTGTTGCCAATGCAAATTC
CAGTTTGGTTGGTTTGTTTTTGTTGATAGTGGTTTTTTTTTGTCCGGTAA
AATGTTTAGCTATGATCAGTGCTTATGTGGTATTTGGTTTATTGCATAAG
TTTGCGAGCTGTCACCTTTTCCATTTTGTGGTTTGAATTATAGTATTGGT
TTTGTTCATGTGAGAACTATGTTGCACGGGTATGGGGATTGGGTGGTTGT
ATGCTGTAATTCTGAAATTGTTGATTCCGTTTAAAGTTGTTGTCCTTTCC
GTGAGAGGTATGTGGTAAGAAGAAAGCTTTCAGTTTCTCAGGAAAAACAC
AGAGGCTTTGGGTTGTTGTATTGTAGGTGTTTCAATTTCAGTCACAGAGG
CTCTGTGCCTTTTCATCCTCGTCCCTCTCTTTCTATCTCTCTCTCTAAGG
CTTTGGCATGGATTGCTTTTAGTCTGTCCTTTAGTATTGATGTGGAAAAG
CTGTGTTAGCTACCTGCAGAGTTTTTTCTTGTGCTAATTTTAGTTTATTT
TTACAAATTTTTTTAGTGGAGTTAGGGTTTCGTTTTTTGAATATTTTGAG
TGACATTTGAATTGCTACTGGCATCCTTCAGAACTTTGGCCATATTGGAT
GCAATGCTTCACTGGGGAAAATCTTGTTTTTACACATGATGCTGTGTAAG
GCTGAACCCTTTTTCTGGGTCTTGTAGTGATTTCTTCTTTTGGATAGAAA
ACACAGGTTTCTGATTGGAGAATGAACACAATTTTTATGCATTTCAACAA
AACAGCCAAGTGCCTAAATCTCATTTCTGGTGATCTCAGATCACTCTGGC
TTCAATTCTGGTTAGTCCACTGCACTCTTGCAGAATTTTTGGAAAGTCAG
TGCTCCTTACATCTTTGCAGTCAAAATTGTGATATTCCTCATATGATTAC
TCAATTTCACTAGTTTTTATCTTAGCTGCTATCCTGATCTCCCTAAAAAA
CTAATCTAGTAGGGTTGCACGATCTTAAGTGTTGAATTAGTGTTATTGAT
GATCCCTTTGTGCAACTCACAAGGATATCTTTAGAAGTGATTCATCTGCA
AACAACCCTTGAACTTTATTTCCTTATATTTTGATATCCATTTATATTTT
CTCTATTTTATTTACTTTTTTGAATGCCTGTGCACGTCTGAATTAATAGA
TAAATTCATCACAGCCCTTAATTATCTTTTCTCCCTGTTATGTCACTCAA
GGTCAACCTTTAGGTGTTTAGGTAGATATATGAATATACTGTGGACATGG
TCTTAACTCTTAAGCATTTATCTTTGCTTCTCAAAGTAATTAAATACCCA
TGAAAAAGTGCATCTGATATTAGAGTTTACACATACCGTGGTTAGAGCTT
CATAAACTTGACTCGTACGTTAGAATCGTAAACTTGTAAGAGTTTGCTTT
GTATAAAAATGTATTAAAATATCTGTCAATAATATAATAATTTAATATTA
TATGTAATATATTATGCTATAAATAATTTTTGTATTTTTTTACTATTTTT
CTATTATCAGTTGATTGTATTATTTAATAGTTTTTTTATATTTTTCTAAT
ATTATTATACTTCTATCATTACTCTTTAGTTGATATATTATATGTATTAT
GTTCTGCATAAAAGAATGTTTTTGGACTTAAAGTGAGCCCCAACAATCCA
AAATGTCAGCAAGAGAAGATTAAAAACACGCATAAACTCTAATAGGACCC
AACTCACTAATTTTGTAGCCCAGTCTGGTGAAGACAGTCGAAACTTAAAA
CGACCTTAGAAAGACACCAACACAATCCTGTATTCCATAGGCTGTAGCAA
GCTTCAGCTAGTTAAGAGGGGATTTAGGGTTCCAGGAAACATGTTGAAAC
AAGCAATTGGCAGAACTTGCAGAACCAGTGCTCATGCTTTTGAAGGAAAC
AGAGTTTTGCCTTGGATATATGTGCCTTCGTGCTTTTTCCACAATGGACA
GGTAAAGTCTCTTATTCAAAGCACAATTTAAATTATTTTTTCAATATTTT
TCTGTAGAATTTCCTTTTTGTCTGTTTAATAAATTATAGAATTTGGTTGA
ATCTTGATTTAAGTTTCCCACTTTGGGGGAAACTTCATTGGTTTATGTGT
CAAAAACAAATGATAATGTACACTCGATTTTCATTTTGTTTCAAGTAATA
TGGTGTGATGGGCATTACTGCCTTTAATTGAAATAATTCCTTTCATAGAT
AAATTAGATAATCAGATGCTAAGCTTCAAACAAAGTATGAAATCCTGAAG
CTTATAAAGTTGTACAGGGTTAAATTGGCCTGTGATAATAAATAATTTCT
TTAGCTTTTGCATATAGCTTGGAATGAGCCTAAGTTTAATAGAAGAAATC
AAGTTTGGAAGGTCTACTACAGGAGGAATAAAATTCAGTAGTTTAGGTTT
GTGACAAACCATAACAGATGATATTATTGTGTGATATTAAAGGGCCCTGA
TTTTAAATTATTGTGAGGGGCATTGGTTGATAGTTGGAAGGGAAAAGGAT
CTATGTTGTACAACAGTTAGTTAGAGATTATTCAGCACTAGTGTGAATTC
ATTGATCCCACATATATGTGTAGTGTAATCAACTACCTAGTATAGTTTTA
CCATTCCAAGTAGCTTGTGTGGATTTTATCCAATTGAAAAATAAAGTTGA
ACAAGCCTAAAATGCCAATTTGAGGTGAATCATTTGTGTAGTATTATTAA
TACTCATTTTTAATTCATTTATTTTATACAGGCACATATGGCACCTAGAA
GCTTTTTTGGGGTAGAGGATTTCCTCGATGATGACAATAGTCGACCTTAC
ACATACCAAAAAGGGAAGAAATCAAAGAATCCAAACAAGCACATATCTTT
CAAACAAAGAACGATTGCGTACATGGAGCCGTTTACACTTGATGTGTTTA
TCTCAAAACGCTTTGTATCAGCTTCACTCACTCATAGGGTGACAAGCAAA
CAGGTTGCAGTTGCTGGTACCAACTCCAAGGACATAAAAGCTGTTCTTAG
GTCTCGGTCAGACATACCAGCATGCATATCCATCGGCAAGATTTTATCTG
AAAGAGCAAGAGAAGCTGATGTTTACACTGCTTCCTACACTCCAAGGGAA
AGGGACAAGTTTGAAGGGAAAATCAGAGCTGTAGTTCAATCACTCATTGA
TAATGGGATTGATATCAAGGTTTACCTTGATTGAGTTGAGTAGTAACTCA
AGATTTTGTGGCTATCAATTTGATATCAATTGGTGATTACTGGTTTGGTT
TTGTGGCTAGTTAGTTACCATATGCTGCTTTGATGGATAGGAAGATGGAG
AAGCATTGTTTAGGGCTAGTAATTTGGGGAAATTATGCATGAACAAAGAA
AGATCTTTCAAACTCGTGCATGCAATATGATAACTCCTGATTTCACTGTA
ACCTTAGAGGCTAAAGGGGTTTGTGTGCTGCTCAACATTTGTCATCTTCT
ATTTGTCGTTTCCTCCCTTTCACTTATTTAGCAGTGAGAGGTGTCAAAGT
GAGTCAACCTGACTCACACGAGTTGGCCCATTACGGGTTGAACTACAAAA
ACATCGACTCAAACCGTCTCACTTTTTGGTGAGTCAAAAATTTTGCAATT
TTGCAATTCGGCTTGACCCATTACGGATTGATGAGTTGATGGGTTAGTTC
ACTTACGTGTGTGT
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Coding sequence (CDS) from alignment at Vu01:1826894..1831007-

>Vigun01g016700.5_Vu_IT97K-499-35_v1.1 ID=Vigun01g016700.5_Vu_IT97K-499-35_v1.1; Name=Vigun01g016700.5; organism=Vigna unguiculata; type=CDS; length=564bp; location=Sequence derived from: Vu01:1826894..1831007- (Vigna unguiculata
ATGTTGAAACAAGCAATTGGCAGAACTTGCAGAACCAGTGCTCATGCTTT
TGAAGGAAACAGAGTTTTGCCTTGGATATATGTGCCTTCGTGCTTTTTCC
ACAATGGACAGGCACATATGGCACCTAGAAGCTTTTTTGGGGTAGAGGAT
TTCCTCGATGATGACAATAGTCGACCTTACACATACCAAAAAGGGAAGAA
ATCAAAGAATCCAAACAAGCACATATCTTTCAAACAAAGAACGATTGCGT
ACATGGAGCCGTTTACACTTGATGTGTTTATCTCAAAACGCTTTGTATCA
GCTTCACTCACTCATAGGGTGACAAGCAAACAGGTTGCAGTTGCTGGTAC
CAACTCCAAGGACATAAAAGCTGTTCTTAGGTCTCGGTCAGACATACCAG
CATGCATATCCATCGGCAAGATTTTATCTGAAAGAGCAAGAGAAGCTGAT
GTTTACACTGCTTCCTACACTCCAAGGGAAAGGGACAAGTTTGAAGGGAA
AATCAGAGCTGTAGTTCAATCACTCATTGATAATGGGATTGATATCAAGG
TTTACCTTGATTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR005484Ribosomal_uL18
IPR036967Ribosomal_uS11_sf
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome