Vigun01g027500.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun01g027500.1 vs. DB:Swiss
Match: CITRX_ARATH (Thioredoxin-like protein CITRX, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CITRX PE=1 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 4.658e-80 Identity = 117/166 (70.48%), Postives = 136/166 (81.93%), Query Frame = 1 Query: 67 PLCASLPNPS--FITHH-NPYPLTTTTHLNNNKPLSLSTVPRKLLCKPTQGKYIRDDYLVKKLSAEEIQELVKGERKVPLIIDFYATWCGPCILMAQELEMLAVEYENKALFVKVDTDDEYEFSRDMQVRGLPTVFFISPDPNKDAIRTEGLIPIQMMRDIIDKDM 555 P+ +SL PS FI P ++ N P S T PRKLLC P +GK++R+DYLVKKLSA+E+QELVKG+RKVPLI+DFYATWCGPCILMAQELEMLAVEYE+ A+ VKVDTDDEYEF+RDMQVRGLPT+FFISPDP+KDAIRTEGLIP+QMM DIID +M Sbjct: 18 PILSSLHAPSSLFIRREIRPVAAPFSSSTAGNLPFSPLTRPRKLLCPPPRGKFVREDYLVKKLSAQELQELVKGDRKVPLIVDFYATWCGPCILMAQELEMLAVEYESNAIIVKVDTDDEYEFARDMQVRGLPTLFFISPDPSKDAIRTEGLIPLQMMHDIIDNEM 183
BLAST of Vigun01g027500.1 vs. DB:Swiss
Match: CITRX_SOLLC (Thioredoxin-like protein CITRX, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CITRX PE=1 SV=1) HSP 1 Score: 233.417 bits (594), Expect = 6.828e-78 Identity = 115/160 (71.88%), Postives = 133/160 (83.12%), Query Frame = 1 Query: 88 NPSFITHHNPYPLTTT--THLNNNKPLSLSTV-PRKLLCKP-TQGKYIRDDYLVKKLSAEEIQELVKGERKVPLIIDFYATWCGPCILMAQELEMLAVEYENKALFVKVDTDDEYEFSRDMQVRGLPTVFFISPDPNKDAIRTEGLIPIQMMRDIIDKDM 555 +PS+++ P+ L + H + LSL+ V R +CKP GKY+R+DYLVKKLSA+EIQEL+KGER VPLIIDFYATWCGPCILMAQELEMLAVEYEN AL VKVDTDDEYEF+RDMQVRGLPT++FISPD +KDAIRTEGLIPIQMMRDIID D+ Sbjct: 16 SPSYLSSKLPHHLNYSLFKHAPSTSTLSLTQVLSRNTICKPPAVGKYVREDYLVKKLSAKEIQELIKGERNVPLIIDFYATWCGPCILMAQELEMLAVEYENNALIVKVDTDDEYEFARDMQVRGLPTLYFISPDSSKDAIRTEGLIPIQMMRDIIDNDL 175
BLAST of Vigun01g027500.1 vs. DB:Swiss
Match: CITRX_SOLTU (Thioredoxin-like protein CITRX, chloroplastic OS=Solanum tuberosum OX=4113 GN=CITRX PE=3 SV=1) HSP 1 Score: 231.491 bits (589), Expect = 3.339e-77 Identity = 114/160 (71.25%), Postives = 134/160 (83.75%), Query Frame = 1 Query: 88 NPSFITHHNPYPLTTT--THLNNNKPLSLS-TVPRKLLCKPTQ-GKYIRDDYLVKKLSAEEIQELVKGERKVPLIIDFYATWCGPCILMAQELEMLAVEYENKALFVKVDTDDEYEFSRDMQVRGLPTVFFISPDPNKDAIRTEGLIPIQMMRDIIDKDM 555 +PS+ + P+ L + +H LSL+ T+ RK +C+P GKY+R+DYLVKKLSA+EIQEL+KGER VPLIIDFYATWCGPCILMAQELEMLAVEYEN AL VKVDTDDEYEF+RDMQVRGLPT++FISPD +KDAIRTEGLIPIQMMRDII+ D+ Sbjct: 16 SPSYFSSKLPHHLNYSLFSHTPPTSTLSLTQTLSRKSICQPRAVGKYVREDYLVKKLSAKEIQELIKGERNVPLIIDFYATWCGPCILMAQELEMLAVEYENNALIVKVDTDDEYEFARDMQVRGLPTLYFISPDSSKDAIRTEGLIPIQMMRDIINNDL 175
BLAST of Vigun01g027500.1 vs. DB:Swiss
Match: CITX2_NICBE (Thioredoxin-like protein CITRX2, chloroplastic OS=Nicotiana benthamiana OX=4100 GN=CITRX2 PE=1 SV=1) HSP 1 Score: 230.72 bits (587), Expect = 7.361e-77 Identity = 108/135 (80.00%), Postives = 122/135 (90.37%), Query Frame = 1 Query: 160 LSLSTVPRKLLCKP---TQGKYIRDDYLVKKLSAEEIQELVKGERKVPLIIDFYATWCGPCILMAQELEMLAVEYENKALFVKVDTDDEYEFSRDMQVRGLPTVFFISPDPNKDAIRTEGLIPIQMMRDIIDKDM 555 LS T+ RK +CKP GKY+R+DYLVKK+SA++IQEL+KGER VPLIIDFYATWCGPCILMAQELEMLAVEYE+ AL VKVDTDDEYEF+RDMQVRGLPT++FISPDPNKDAIRTEGLIPIQMMRDII+ D+ Sbjct: 47 LSTQTLSRKSICKPPDVATGKYVREDYLVKKVSAKDIQELIKGERNVPLIIDFYATWCGPCILMAQELEMLAVEYESNALIVKVDTDDEYEFARDMQVRGLPTLYFISPDPNKDAIRTEGLIPIQMMRDIINNDL 181
BLAST of Vigun01g027500.1 vs. DB:Swiss
Match: CITX1_NICBE (Thioredoxin-like protein CITRX1, chloroplastic OS=Nicotiana benthamiana OX=4100 GN=CITRX1 PE=2 SV=1) HSP 1 Score: 229.565 bits (584), Expect = 2.860e-76 Identity = 112/169 (66.27%), Postives = 130/169 (76.92%), Query Frame = 1 Query: 115 PYPLTTTTHLNNNKP-------------------LSLSTVPRKLLCKP---TQGKYIRDDYLVKKLSAEEIQELVKGERKVPLIIDFYATWCGPCILMAQELEMLAVEYENKALFVKVDTDDEYEFSRDMQVRGLPTVFFISPDPNKDAIRTEGLIPIQMMRDIIDKDM 555 P P T+ H ++ +P LS T+ RK +CKP GKY+R+DYLVKK+SA++IQEL+KGER VPLIIDFYATWCGPCILMAQELEMLAVEYE+ AL VKVD DDEYEF+RDMQVRGLPT++FISPDPNKDAIRTEGLIPIQMMRDII+ D+ Sbjct: 13 PPPQTSACHFSSKQPNQLKYSLFSYTCPILKRSLLSTQTLSRKSICKPPAVATGKYVREDYLVKKVSAKDIQELIKGERNVPLIIDFYATWCGPCILMAQELEMLAVEYESNALIVKVDADDEYEFARDMQVRGLPTLYFISPDPNKDAIRTEGLIPIQMMRDIINNDL 181
BLAST of Vigun01g027500.1 vs. DB:Swiss
Match: CITRX_ORYSI (Thioredoxin-like protein CITRX, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_29059 PE=3 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 1.021e-65 Identity = 90/119 (75.63%), Postives = 109/119 (91.60%), Query Frame = 1 Query: 199 PTQGKYIRDDYLVKKLSAEEIQELVKGERKVPLIIDFYATWCGPCILMAQELEMLAVEYENKALFVKVDTDDEYEFSRDMQVRGLPTVFFISPDPNKDAIRTEGLIPIQMMRDIIDKDM 555 P GKYI DYLVKK++A+E++ELV+GERKVPLI+DFYATWCGPC+LMAQ++EMLAVEYEN ALFVKVDTDDEYE +RDMQVRGLPT++F SPD +KDA+RTEGLIPI M+R+IID ++ Sbjct: 71 PGSGKYIAPDYLVKKVTAKELEELVRGERKVPLIVDFYATWCGPCVLMAQDIEMLAVEYENNALFVKVDTDDEYELARDMQVRGLPTLYFFSPDQSKDALRTEGLIPIDMIRNIIDNEL 189
BLAST of Vigun01g027500.1 vs. DB:Swiss
Match: CITRX_ORYSJ (Thioredoxin-like protein CITRX, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0378900 PE=2 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 1.841e-65 Identity = 90/119 (75.63%), Postives = 109/119 (91.60%), Query Frame = 1 Query: 199 PTQGKYIRDDYLVKKLSAEEIQELVKGERKVPLIIDFYATWCGPCILMAQELEMLAVEYENKALFVKVDTDDEYEFSRDMQVRGLPTVFFISPDPNKDAIRTEGLIPIQMMRDIIDKDM 555 P GKYI DYLVKK++A+E++ELV+GERKVPLI+DFYATWCGPC+LMAQ++EMLAVEYEN ALFVKVDTDDEYE +RDMQVRGLPT++F SPD +KDA+RTEGLIPI M+R+IID ++ Sbjct: 71 PGSGKYIAPDYLVKKVTAKELEELVRGERKVPLIVDFYATWCGPCVLMAQDIEMLAVEYENNALFVKVDTDDEYELARDMQVRGLPTLYFFSPDQSKDALRTEGLIPIDMIRNIIDNEL 189
BLAST of Vigun01g027500.1 vs. DB:Swiss
Match: THIO_BORBU (Thioredoxin OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) OX=224326 GN=trxA PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.332e-15 Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 1 Query: 220 RDDYLVKKLSAEEIQEL-VKGERKVPLIIDFYATWCGPCILMAQELEMLAVEYENKALFVKVDTDDEYEFSRDMQVRGLPTVFFISPD 480 +D++VK + +E +G+R P IIDFYA WCGPC +++ E L+ +YEN F KVDTD E + S + V+ LPT+ FI D Sbjct: 7 EEDFVVKVFDYKNDKEWSFRGDR--PAIIDFYANWCGPCKMLSPIFEKLSKKYENSIDFYKVDTDKEQDISSAIGVQSLPTILFIPVD 92
BLAST of Vigun01g027500.1 vs. DB:Swiss
Match: THIO_CHLAA (Thioredoxin OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) OX=324602 GN=trxA PE=1 SV=3) HSP 1 Score: 71.2478 bits (173), Expect = 3.600e-15 Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = 1 Query: 286 KVPLIIDFYATWCGPCILMAQELEMLAVEYENKALFVKVDTDDEYEFSRDMQVRGLPTVFFISPDPNKDAIRTEGLIPIQMMRDIIDK 549 K P+++DF+A WCGPC ++A L+ LA EY + KV+TDD +++ + ++G+PT+ ++ R G P M R+I DK Sbjct: 20 KTPVVVDFWAPWCGPCRVIAPILDKLAGEYAGRLTIAKVNTDDNVQYASQLGIQGIPTLVIFK--DGREVGRLVGARPEAMYREIFDK 105
BLAST of Vigun01g027500.1 vs. DB:Swiss
Match: THIO1_CHLTE (Thioredoxin 1 OS=Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) OX=194439 GN=trx1 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.696e-14 Identity = 33/95 (34.74%), Postives = 57/95 (60.00%), Query Frame = 1 Query: 250 AEEIQELVKGERKVPLIIDFYATWCGPCILMAQELEMLAVEYENKALFVKVDTDDEYEFSRDMQVRGLPTVFFISPDPNKDAIRTEGLIPIQMMR 534 A+ + +L++ ++P+ IDF+A WCGPC ++A ++ LA E++ + + VKV+ D + + + QV+G+P + K RT G IP Q MR Sbjct: 2 AQTLDDLIR-TSELPVFIDFWADWCGPCKMVAPSVKQLASEFKGRLIVVKVNVDQQPDAAARFQVQGIPALMLFVGGQLK--WRTAGAIPYQQMR 93 The following BLAST results are available for this feature:
BLAST of Vigun01g027500.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g027500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g027500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g027500.1; organism=Vigna unguiculata; type=mRNA; length=1156bpback to top protein sequence of Vigun01g027500.1_Vu_IT97K-499-35_v1.1 >Vigun01g027500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g027500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g027500.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=186bpback to top mRNA from alignment at Vu01:3275361..3280249- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun01g027500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g027500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g027500.1; organism=Vigna unguiculata; type=mRNA; length=4889bp; location=Sequence derived from: Vu01:3275361..3280249- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu01:3275361..3280249- >Vigun01g027500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g027500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g027500.1; organism=Vigna unguiculata; type=CDS; length=558bp; location=Sequence derived from: Vu01:3275361..3280249- (Vigna unguiculataback to top |