Vigun01g027700.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Vigun01g027700.1 vs. DB:Swiss
Match: PUB38_ARATH (U-box domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=PUB38 PE=1 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 2.216e-9 Identity = 64/205 (31.22%), Postives = 92/205 (44.88%), Query Frame = 1 Query: 388 VGAKPEILRALISIISDPDSLTRTIKDALKASFGIALYRPSRTALVRLGAVPVLFGLVAKDKDGKRKVGIIEDATAVIAQIAACEESEDAFLKVSGVSRLAMMLCSE------SGNCSLRTKENAVAALLNLVRYGSERVVGEVKNKVGALDGISYVQEHGSPKGKSKAVAFFKLLL-----DGGSSGEIAQDLYPVHSDSGSSR 969 +GA +L AL + SD RT D+ A + + L + +R+ LVRLGAVP LF +V + R A VI +A C E A L + V+ L L E S +EN VAAL L + S R G K + A++ + V+E G+ + + KA +L+ D GE + D V +GS R Sbjct: 347 LGALQPLLHALRAAESD-----RTRHDSALALYHLTLNQTNRSKLVRLGAVPALFSMVRSGESASR-------ALLVICNLACCSEGRSAMLDANAVAILVGKLREEWTEEPTEARSSSSARENCVAALFAL-SHESLRFKGLAK-EARAVEVLKEVEERGTERAREKAKKILQLMRERVPEDDEEDGEGSIDWDRVIDSNGSIR 537
BLAST of Vigun01g027700.1 vs. DB:Swiss
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PUB2 PE=2 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 1.416e-8 Identity = 88/293 (30.03%), Postives = 143/293 (48.81%), Query Frame = 1 Query: 22 IRTLVSSLTSSSDQTXXXXXXXXXXTSNEDPASRTIISXXXXXXXXXXXXYSPSHPIQDDAAATLLNLSISD-RRXXXXXXXXXXXXXHVLSRHXXXXXXXXXXXXXXTLHSLLAVVAEFRPTVGAKPEILRALISIISDPDSLTRTIKDALKASFGIALYRPSRTALVRLGAVPVLFGLVAKDKDGKRKVGIIEDATAVIAQIAACEESEDAFLKVSGVSRLAMMLCSESGNCSLRTKENAVAALLNLVRYGSERVVGEVKNKVGALDGISYVQEHGSPKGKSKAVAFFKLL 897 ++ L+ L SSS T+ A +R + +R +I+ A+P L + LYS IQ DA LLNLSI+D + L++ + L HVL T A ++AATL S L+V+ E++ +G I L+ ++ SL+ KDA A F ++++ ++T ++ GAV L L+ G++E A V+A +A E + A + G+ L ++ E G S R KENA AALL L + + ++ G + + + + G+ +GK KA K Sbjct: 423 VKKLIDDLKSSSLDTQREATARIRILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQADAVTCLLNLSINDNNKSLIAESGAIVPLIHVLK---TGYLEEAKANSAATLFS-LSVIEEYKTEIGEAGAI-EPLVDLLGS-GSLSGK-KDAATALFNLSIHHENKTKVIEAGAVRYLVELMDP------AFGMVEKAVVVLANLATVREGKIAIGEEGGIPVLVEVV--ELG--SARGKENATAALLQLCTHSPKFCNNVIRE--GVIPPLVALTKSGTARGKEKAQNLLKYF 696
BLAST of Vigun01g027700.1 vs. DB:Swiss
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUB4 PE=1 SV=3) HSP 1 Score: 59.6918 bits (143), Expect = 1.465e-8 Identity = 89/293 (30.38%), Postives = 145/293 (49.49%), Query Frame = 1 Query: 22 IRTLVSSLTSSSDQTXXXXXXXXXXTSNEDPASRTIISXXXXXXXXXXXXYSPSHPIQDDAAATLLNLSISD-RRXXXXXXXXXXXXXHVLSRHXXXXXXXXXXXXXXTLHSLLAVVAEFRPTVGAKPEILRALISIISDPDSLTRTIKDALKASFGIALYRPSRTALVRLGAVPVLFGLVAKDKDGKRKVGIIEDATAVIAQIAACEESEDAFLKVSGVSRLAMMLCSESGNCSLRTKENAVAALLNLVRYGSERVVGEVKNKVGALDGISYVQEHGSPKGKSKAVAFFKLL 897 ++ LV L SSS T+ A LR + + +R +I +GA+ LL LYS Q++A LLNLSI+D + ++ + L HVL + A +++AATL S L+V+ E + +G I L+ ++ + R KDA A F +++++ ++ +V+ GAV L L+ G+++ A AV+A +A E +A + G+ L ++ E G S R KENA AALL L S R V + GA+ + + + G+P+ + KA A Sbjct: 543 VKKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLEN----GSSEAKENSAATLFS-LSVIEENKIKIGQSGAI-GPLVDLLG--NGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDP------AAGMVDKAVAVLANLATIPEGRNAIGQEGGIPLLVEVV--ELG--SARGKENAAAALLQL-STNSGRFCNMVLQE-GAVPPLVALSQSGTPRAREKAQALLSYF 815
BLAST of Vigun01g027700.1 vs. DB:Swiss
Match: PUB1_MEDTR (U-box domain-containing protein 1 OS=Medicago truncatula OX=3880 GN=PUB1 PE=1 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 7.263e-8 Identity = 46/180 (25.56%), Postives = 90/180 (50.00%), Query Frame = 1 Query: 358 LAVVAEFRPTVGAKPEILRALISIISDPDSLTRTIKDALKASFGIALYRPSRTALVRLGAVPVLFGLVAKDKDGKRKVGIIEDATAVIAQIAACEESEDAFLKVSGVSRLAMMLCSESGNCSLRTKENAVAALLNLVRYGSERVVGEVKNKVGALDGISYVQEHGSPKGKSKAVAFFKLL 897 L+++ + + +GA + AL+ ++ + + + +DA A F +A+Y P++ ++V+ GAV +L L+ D K GI +D+ AV+A + C E + ++ L +L S++ KEN++ LL L + E V + ++ + + GS + + KA A +LL Sbjct: 514 LSMIDDCKVQIGASSRAIPALVGLLKEGTIIGK--RDAATALFNLAVYNPNKLSIVKSGAVTLLVELLMDD-----KAGITDDSLAVLAVLLGCSEGLE---EIKNSKSLVPLLIDLLRFGSVKGKENSITLLLGLCKEEGELVAMRLLANPRSIPSLQSLAADGSLRARRKADALLRLL 683
BLAST of Vigun01g027700.1 vs. DB:Swiss
Match: SL11_ORYSJ (E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL11 PE=1 SV=2) HSP 1 Score: 55.4546 bits (132), Expect = 3.011e-7 Identity = 67/235 (28.51%), Postives = 119/235 (50.64%), Query Frame = 1 Query: 193 QDDAAATLLNLSI-SDRRXXXXXXXXXXXXXHVLSRHXXXXXXXXXXXXXXTLHSLLAVVAEFRPTVGAKPEILRALISIISDPDSLTRTIKDALKASFGIALYRPSRTALVRLGAVPVLFGLVAKDKDGKRKVGIIEDATAVIAQIAACEESEDAFLKVSGVSRLAMMLCSESGNCSLRTKENAVAALLNLVRYGSERVVGEVK-NKVGALDGISYVQEHGSPKGKSKAVAFFK 891 Q+ A LLNLSI D + + +PS+ HVL + A ++AAATL SL +V+ E++ T+G I AL+ ++ + R KDA A F + +Y+ ++ +R G VP++ GLV ++++A A+++ +++ E + A V L M+ G+ + R +ENA A +L+L G +V + + G + + + +G+ +GK KAV + Sbjct: 426 QEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKN----GSMEARENAAATLFSL-SVIDEYKVTIGGMGAI-PALVVLLGE--GSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTG-----ALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMI----GSGTPRNRENAAAVMLHLCS-GEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLE 642
BLAST of Vigun01g027700.1 vs. DB:Swiss
Match: SL11_ORYSI (Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2) HSP 1 Score: 55.4546 bits (132), Expect = 3.011e-7 Identity = 67/235 (28.51%), Postives = 119/235 (50.64%), Query Frame = 1 Query: 193 QDDAAATLLNLSI-SDRRXXXXXXXXXXXXXHVLSRHXXXXXXXXXXXXXXTLHSLLAVVAEFRPTVGAKPEILRALISIISDPDSLTRTIKDALKASFGIALYRPSRTALVRLGAVPVLFGLVAKDKDGKRKVGIIEDATAVIAQIAACEESEDAFLKVSGVSRLAMMLCSESGNCSLRTKENAVAALLNLVRYGSERVVGEVK-NKVGALDGISYVQEHGSPKGKSKAVAFFK 891 Q+ A LLNLSI D + + +PS+ HVL + A ++AAATL SL +V+ E++ T+G I AL+ ++ + R KDA A F + +Y+ ++ +R G VP++ GLV ++++A A+++ +++ E + A V L M+ G+ + R +ENA A +L+L G +V + + G + + + +G+ +GK KAV + Sbjct: 426 QEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKN----GSMEARENAAATLFSL-SVIDEYKVTIGGMGAI-PALVVLLGE--GSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTG-----ALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMI----GSGTPRNRENAAAVMLHLCS-GEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLE 642
BLAST of Vigun01g027700.1 vs. DB:Swiss
Match: PUB18_ARATH (U-box domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=PUB18 PE=1 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 3.770e-7 Identity = 46/181 (25.41%), Postives = 88/181 (48.62%), Query Frame = 1 Query: 358 LAVVAEFRPTVGAKPEILRALISIISDPDSLTRTIKDALKASFGIALYRPSRTALVRLGAVPVLFGLVAKDKDGKRKVGIIEDATAVIAQIAACEESEDAFLKVSGVSRLAMMLCSESGNCSLRTKENAVAALLNLVRYGSERVVGE-VKNKVGALDGISYVQEHGSPKGKSKAVAFFKLL 897 L+ V ++ +G P+ + L++I+ D + AL A G+ + + ++ GAVP+L L+ + G+ G+ D A +A++A + ++ G+ +LA+ + S S + + K++ V +LNL G VVG VKN + + + V +G G KA A +++ Sbjct: 498 LSSVEDYSRLIGENPDAIPGLMNIVKGDDYGDSAKRSALLAVMGLLMQSDNHWRVLAAGAVPILLDLL---RSGEISGGLTADCLATLAKLAEYPDGTIGVIRRGGL-KLAVKILSSSEDSPVAVKQHCVGLILNLCLNGGRDVVGVLVKNSL-VMGSLYTVLSNGEYGGSKKASALIRMI 673
BLAST of Vigun01g027700.1 vs. DB:Swiss
Match: PUB12_ARATH (U-box domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=PUB12 PE=2 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 4.731e-7 Identity = 63/234 (26.92%), Postives = 122/234 (52.14%), Query Frame = 1 Query: 193 QDDAAATLLNLSI--SDRRXXXXXXXXXXXXXHVLSRHXXXXXXXXXXXXXXTLHSLLAVVAEFRPTVGAKPEILRALISIISDPDSLTRTIKDALKASFGIALYRPSRTALVRLGAVPVLFGLVAKDKDGKRKVGIIEDATAVIAQIAACEESEDAFLKVSGVSRLAMMLCSESGNCSLRTKENAVAALLNLVRYGSERVVGEVKNKVGALDGISYVQEHGSPKGKSKAVAFF 888 Q+ A ++LNLSI ++ ++ +P + HVL + + A ++AAATL SL +V+ E + T+GA I L++++S+ R KDA A F + +++ ++ VR G VPVL L+ + + G+++++ +++A +++ + + V L + S S R KEN+ A L++L + + ++ K+G +D + + E+G+ +GK KA Sbjct: 415 QEHAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQK----GSMEARENAAATLFSL-SVIDENKVTIGAAGAI-PPLVTLLSEGSQ--RGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPES-----GMVDESLSILAILSSHPDGKSEVGAADAVPVLVDFIRSGSP----RNKENSAAVLVHLCSWNQQHLIE--AQKLGIMDLLIEMAENGTDRGKRKAAQLL 629
BLAST of Vigun01g027700.1 vs. DB:Swiss
Match: PUB41_ARATH (U-box domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=PUB41 PE=2 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 5.842e-7 Identity = 53/163 (32.52%), Postives = 84/163 (51.53%), Query Frame = 1 Query: 388 VGAKPEILRALISIISDPDSLTRTIKDALKASFGIALYRPSRTALVRLGAVPVLFGLVAKDKDGKRKVGIIEDATAVIAQIAACEESEDAFLKVSGVSRLAMMLCSESGNCSLRTKENAVAALLNLVRYGSERVVGEVKNKVGALDGISYVQEHGSPKGKSKA 876 +GA +L AL S S+ R +DA A + ++L +RT LVR GAVP L +V + D ++ + V+ +AAC + + A L + V+ L L G S +EN VA LL L + G+ R G + ++ GA + + V+E+G+ + K KA Sbjct: 357 LGAVEPLLHALRSSESE-----RARQDAALALYHLSLIPSNRTRLVRAGAVPTLLSMV-RSGDSTSRILL------VLCNLAACPDGKGAMLDGNAVAILVGKLREVGGGDSEAARENCVAVLLTLCQ-GNLRFRG-LASEAGAEEVLMEVEENGNERVKEKA 505 The following BLAST results are available for this feature:
BLAST of Vigun01g027700.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 9
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g027700.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g027700.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g027700.1; organism=Vigna unguiculata; type=mRNA; length=972bpback to top protein sequence of Vigun01g027700.1_Vu_IT97K-499-35_v1.1 >Vigun01g027700.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g027700.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g027700.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=324bpback to top mRNA from alignment at Vu01:3304948..3305919- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun01g027700.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g027700.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g027700.1; organism=Vigna unguiculata; type=mRNA; length=972bp; location=Sequence derived from: Vu01:3304948..3305919- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu01:3304948..3305919- >Vigun01g027700.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g027700.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g027700.1; organism=Vigna unguiculata; type=CDS; length=972bp; location=Sequence derived from: Vu01:3304948..3305919- (Vigna unguiculataback to top |