Vigun01g028300.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun01g028300.1 vs. DB:Swiss
Match: LRP1_ARATH (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.325e-48 Identity = 98/191 (51.31%), Postives = 123/191 (64.40%), Query Frame = 1 Query: 436 CQDCGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRRERDTVLPSAGG------------SKRPRAIVGXXXXXXXXXXXXXXXXXXXPKSLATISSHQD-ASFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVEGKIANAVPCVSELQLGNNCSAKNRECSSA 969
CQDCGN+AKK+C RRCRTCCK RG+DCSTHVKSTWV + RRRER V+P+ +K+PR IVGS Q + S S + T P+S T SS QD +++ PG VRA AVFKC RV+A+ +G+DE+AY A V I GHVFKGFLYD G+E K P +S+L LG + + N +SA
Sbjct: 112 CQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQ-VMPTGANPTAGSSLSTSSGTKKPR-IVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPK--EGFPSMSDLHLGGSANNHNGVSASA 298
BLAST of Vigun01g028300.1 vs. DB:Swiss
Match: SRS6_ARATH (Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=SRS6 PE=1 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 7.567e-37 Identity = 77/174 (44.25%), Postives = 103/174 (59.20%), Query Frame = 1 Query: 400 EENGIYGPDFRVCQDCGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRRERDTVLPSAGGSKRPRAIVGXXXXXXXXXXXXXXXXXXXPKSLATISSHQDASFKQSLPGHVRAPAVFKCHRVSAIGNGED-EFAYLATVHISGHVFKGFLYDHGVEGKIANAVPCVSE 918
E+N G +VC+DCGNRAKK+C+F RCRTCCK RGY+C THVKSTW+PS T S+ ++ + + + + L T +S Q+ F++ LPG + APAVFK RV+AI N E E Y ATV ISGH+FKGFL+ +GV+ A PC+S+
Sbjct: 31 EDNNTVGE--KVCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSS-----ATRSSSSPSERKKKLKIDKQSSPNVSL-------------LPTTTSRQERGFREGLPGKIEAPAVFKRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYGVDHN--KAFPCLSQ 182
BLAST of Vigun01g028300.1 vs. DB:Swiss
Match: SRS5_ARATH (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 6.716e-32 Identity = 76/199 (38.19%), Postives = 101/199 (50.75%), Query Frame = 1 Query: 436 CQDCGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRRERDTVLPS----------AGGSKRPRAIVGXXXXXXXXXXXXXXXXXXXPKSLATISSHQDASFKQSLPGHVRAPAVFKCHRVSAIGNGEDE--FAYLATVHISGHVFKGFLYDHGVEGKIANAVPCVSELQLGNNCSAKNRECSSAIGLHNNNNA 996
CQDCGN+AKKDC RCRTCCK RG+ C THVKSTWVP+ +RRER L S +KR R G N + + + +S+ Q LP V +PA+F+C RVS+I ED+ +AY V+I GH+FKG LYD G E + + + ++ N E ++ NNNN
Sbjct: 125 CQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSRETQNAKRLREASGGDNNDDKDHSGGGGSALANTR-VVNANSNSGLEVSQHLPPEVNSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQDNHHLNLLASTATTTNV----EETATKTVTGNNNNG 318
BLAST of Vigun01g028300.1 vs. DB:Swiss
Match: SRS1_ARATH (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 1.893e-31 Identity = 66/146 (45.21%), Postives = 91/146 (62.33%), Query Frame = 1 Query: 436 CQDCGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRRERDTVLPSAG-GSKRPRAIVGXXXXXXXXXXXXXXXXXXXPKSLATISSHQDASFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYD 870
CQDCGN+AKKDC RCRTCCK RG++CSTHV+STWVP+ +RRER L + ++ PR G S + ++++ + + S + +F P V + AVF+C RVS++ +GE+EFAY V I GH+FKG LYD
Sbjct: 144 CQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPAAKRRERQQQLATVQPQTQLPR---GESVPKRHRENLPATSSSLVCTRIPSHSGLEVGNF----PAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYD 282
BLAST of Vigun01g028300.1 vs. DB:Swiss
Match: SHI_ARATH (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 5.030e-31 Identity = 66/148 (44.59%), Postives = 89/148 (60.14%), Query Frame = 1 Query: 436 CQDCGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRRERDTVLPSAGGSKRPRAIVGXXXXXXXXXXXXXXXXXXXPKSLATISSHQDASFK-QSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHG 876
CQDCGN++KKDC RCRTCCK RG DC THVKSTWVP+ +RRER L + ++P+ + GS + S + + I S+ + + + P V + AVF+C RVS++ + E+E+AY V I GHVFKG LYD G
Sbjct: 120 CQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTG---QQPQQLGGSVPKRQRERIPARSTSMAYTR----IPSNNTSGLEVGNFPPEVSSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQG 260
BLAST of Vigun01g028300.1 vs. DB:Swiss
Match: SRS7_ARATH (Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 3.820e-30 Identity = 67/154 (43.51%), Postives = 86/154 (55.84%), Query Frame = 1 Query: 436 CQDCGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRRERD---TVLPSA----GGSKRPRAIVGXXXXXXXXXXXXXXXXXXXPKSLATISSHQDASFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHG 876
CQDCGN+AKKDC RCRTCCK RG+DC THVKSTWV + +RRER VLP+ S+ + + + + SS + S LP + +PAVF+C RVS+I + ++E+AY V I GHVFKG LYD G
Sbjct: 119 CQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQLAVLPAKRIRDANSRGGGDDDDDDKEDEKNDSCGGGSALACTRVVNASSSGLETSH---LPPEISSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQG 269
BLAST of Vigun01g028300.1 vs. DB:Swiss
Match: SRS2_ARATH (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.732e-28 Identity = 63/153 (41.18%), Postives = 89/153 (58.17%), Query Frame = 1 Query: 436 CQDCGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRRERDTVLPSAGGSKRPRAIVGXXXXXXXXXXXXXXXXXXXPKSLATISSHQDASFKQ---SLPGHVRAPAVFKCHRVSAIGNGED-EFAYLATVHISGHVFKGFLYDHGVE 882
C+DCGN+AKKDC RCRTCCK RG+DCSTHV+STW+P RRRER L + + G + ++ + + S ++ A + S PG V + A+F+C ++S + +G D ++AY TV+I GH+FKG LYD G E
Sbjct: 94 CRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSGSGGAGGGGSSIPKRHRDPTLPGTSSSSRLPSHSAGLEMGEASFPGEVSSDALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQGPE 246
BLAST of Vigun01g028300.1 vs. DB:Swiss
Match: SRS4_ARATH (Protein SHI RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=SRS4 PE=1 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.235e-27 Identity = 63/156 (40.38%), Postives = 83/156 (53.21%), Query Frame = 1 Query: 436 CQDCGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRRERDTVLPS-----AGGSKRPRAIVGXXXXXXXXXXXXXXXXXXXPKSLATISSHQDASFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVEGK 888
CQ+CGN+AKK C RCRTCCK G C THV+STW+P +RRER L + GGS R VG ++ AT+ S + P V + A+F+C R+S +GE ++AY TV I+GH+FKG LY+ G E K
Sbjct: 72 CQECGNQAKKGCTHGRCRTCCKSNGLHCPTHVRSTWIPIAKRRERQQQLQTPTSNPTGGSGR----VGKYRDINQH---------------ATLDSSGLEMGETRFPDEVSSDALFRCVRMSGTDDGEGQYAYQTTVGIAGHLFKGILYNQGPENK 208
BLAST of Vigun01g028300.1 vs. DB:Swiss
Match: SRS3_ARATH (Protein SHI RELATED SEQUENCE 3 OS=Arabidopsis thaliana OX=3702 GN=SRS3 PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 6.946e-26 Identity = 53/151 (35.10%), Postives = 79/151 (52.32%), Query Frame = 1 Query: 430 RVCQDCGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRRERDTVLPSAGGSKRPRAIVGXXXXXXXXXXXXXXXXXXXPKSLATISSHQDASFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVE 882
R C+DCGN+AKKDC++ RCRTCCK + + C TH+KSTWVP+ RR + + P S + Q + P + + A F+C +VS+I +G++++AY TV+I GHVF+G L+D G+
Sbjct: 7 RKCEDCGNQAKKDCVYMRCRTCCKSKAFHCQTHIKSTWVPAYRRSHHK--------------------------------HQSQPLSTSIPKGVQIHTTPGHFPAELSSLADFRCVKVSSIDDGKEQYAYQTTVNIGGHVFRGILHDQGLH 125
BLAST of Vigun01g028300.1 vs. DB:Swiss
Match: SRS8_ARATH (Protein SHI RELATED SEQUENCE 8 OS=Arabidopsis thaliana OX=3702 GN=SRS8 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.763e-16 Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1 Query: 436 CQDCGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRRERDTVLPS 588
CQD GN+AKKDC RCRTCCK RG++CSTHV+STWVP+ +RRER L +
Sbjct: 52 CQDFGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPATKRRERQQQLAT 102 The following BLAST results are available for this feature:
BLAST of Vigun01g028300.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g028300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g028300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g028300.1; organism=Vigna unguiculata; type=mRNA; length=1690bpback to top protein sequence of Vigun01g028300.1_Vu_IT97K-499-35_v1.1 >Vigun01g028300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g028300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g028300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=339bpback to top mRNA from alignment at Vu01:3353883..3356377- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun01g028300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g028300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g028300.1; organism=Vigna unguiculata; type=mRNA; length=2495bp; location=Sequence derived from: Vu01:3353883..3356377- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu01:3353883..3356377- >Vigun01g028300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g028300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g028300.1; organism=Vigna unguiculata; type=CDS; length=1017bp; location=Sequence derived from: Vu01:3353883..3356377- (Vigna unguiculataback to top |