Vigun01g029500.1

Transcript Overview


Name	Vigun01g029500.1
Unique Name	Vigun01g029500.1_Vu_IT97K-499-35_v1.1
Type	mRNA
Organism	Vigna unguiculata (cowpea)
Sequence length	478

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Vu01	supercontig	Vu01:3641242..3644511 +	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	2019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	2019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot	2019-10-17

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
vuvuR004	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
psvuL388	Pisum sativum Cameor genome v1a	Pisum sativum
pvvuL133	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
pvvuL468	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
cavuL578	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ccvuL0807	Cajanus cajan Asha genome v1.0	Cajanus cajan
anvuL0253	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvuL1027	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
asvuL090	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
asvuL571	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
vuzwsR026	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
vuzwsR040	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
vrvvuL322	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
vssvuL612	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vssvuL617	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vuvuaR001	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
vuvuaR007	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
carvuL340		Cicer arietinum
carvuL536		Cicer arietinum
ccavuL074	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccavuL353	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
vuvumR048	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vuvumR053	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vuvvaR016	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vuvvaR068	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vstvuL447	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vstvuL490	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vasvuL467	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
vasvuL501	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
pvfvuL117	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
pvfvuL399	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
vuvunR000	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
vuvunR004	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Orthologs


Gene/Transcript	Assembly	Species
Psat05G0611400-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
PvulFLAVERTChr05.133	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Vum_07G01801.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
Vigst.07G143700.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
Vigan.07G234500.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
jg21038.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
LR48_mrnaVigan05g001900	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
XM_058865743.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
rna-XM_014644988.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Vigun01g029500.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Vigun01g029500	Vigun01g029500_Vu_IT97K-499-35_v1.1	Vigna unguiculata	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Vigun01g029500.1_Vu_IT97K-499-35_v1.1	Vigun01g029500.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	polypeptide
Vigun01g029500.1	Vigun01g029500.1_Vu_IT97K-499-35_v1.1-protein	Vigna unguiculata	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun01g029500.1.v1.1.five_prime_UTR.1	Vigun01g029500.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun01g029500.1.v1.1.CDS.1	Vigun01g029500.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	CDS
Vigun01g029500.1.v1.1.CDS.2	Vigun01g029500.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1	Vigna unguiculata	CDS
Vigun01g029500.1.v1.1.CDS.3	Vigun01g029500.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1	Vigna unguiculata	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun01g029500.1.v1.1.three_prime_UTR.1	Vigun01g029500.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	three_prime_UTR

Homology

The following BLAST results are available for this feature:

BLAST of Vigun01g029500.1 vs.

BLAST of Vigun01g029500.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018450	Romo1/Mgr2	SMART	SM01378	Romo1_2	coord: 4..70 e-value: 9.8E-29 score: 111.5
IPR018450	Romo1/Mgr2	PFAM	PF10247	Romo1	coord: 5..70 e-value: 3.6E-20 score: 72.1

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Vu01:3641242..3644511+
coding sequence from alignment at Vu01:3641242..3644511+

mRNA sequence

>Vigun01g029500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g029500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g029500.1; organism=Vigna unguiculata; type=mRNA; length=478bp
GAGTATTAAAGTTAATAAAACCAAATTCTGATTAAAGAGAAAAATCCAAT
TTGAAGAACAAGTTAAGCGAAAAATAAACAAGGAATGGCTAGAGACAGCG
TCCTCACTCGCGTGGCGACCGGAGCCGCCGTGGGCGGTGCTATTGGCGGC
GCAGTCGGTGCCGTTTATGGGACTTACGATGCAATTAGGTATAAGGTTCC
TGGATTCCTCAAGATAAGGCATATTGGACAGACAACTCTAGGGAGTGCAG
CTGTATTTAGCCTGTTCCTTGCAGCAGGAACCTTGATACGATCTCACTAG
TTTGTGCAGTCATGGTGACGTGATTTCTTACAATTTTAGCCAACAGAAAA
AAAAAAAAGTCATGTAACCTCACAGTCTGTAATCTTTTGAGTGTTGGAAT
TAAATAAAGATTTTTTTAAATAAACTGACTTCATATAATTAATTGACTTC
ATATTTTATTATCCATGCTAATGTCAAG

protein sequence of Vigun01g029500.1_Vu_IT97K-499-35_v1.1

>Vigun01g029500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g029500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g029500.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=72bp
MARDSVLTRVATGAAVGGAIGGAVGAVYGTYDAIRYKVPGFLKIRHIGQT
TLGSAAVFSLFLAAGTLIRSH*

mRNA from alignment at Vu01:3641242..3644511+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Vigun01g029500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g029500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g029500.1; organism=Vigna unguiculata; type=mRNA; length=3270bp; location=Sequence derived from: Vu01:3641242..3644511+ (Vigna unguiculata
GAGTATTAAAGTTAATAAAACCAAATTCTGATTAAAGAGAAAAATCCAAT
TTGAAGAACAAGTTAAGCGAAAAATAAACAAGGAATGGCTAGAGACAGCG
TCCTCACTCGCGTGGCGACCGGAGCCGCCGTGGGCGGTGCTATTGGCGGC
GCAGTCGGTGAGATTATACCTCTCATCCTCTGTTTGGTTATCTCCTTTTC
ACTAAGCCGAACACCGCACATCTTTCACTCTCTTCTTCGGTTAATCTTGT
CGATTTTGAAATTTGGTGCGTTGCATGCAGGTGCCGTTTATGGGACTTAC
GATGCAATTAGGTATAAGGTATGTGATTCGATGCCTCTATTTATCTAATG
ACTGAATTGGAAAAGCCAATTTGCCTCTTTTATAATTTGCCTCTCAAAAG
GCAATGTTGATGACGGGTAAGGTTTTAATTAATGAAGAATTGAGGGAAAA
AAAGTTAGTTTGTCTTTCATGAAAGAAATCATATTGGAGCCGAAAGCTAT
TTCACTGGGACATCAAGTGTGTTTCTGATTTTTTTTTTTTTTTAACTTAT
CTTAAACCCTAACTAAGTGTAAAATTAATGTTATATGAAGCTGCTGATTT
AGGGACTTTGCAACTTATTTAACTAAGTGTCATATTAAGAGAACAGTTCT
GATGAGGAATTTAACTGTTTAAGATCAAAGAATAAACAGGAGAAAGGGGG
AGAAAGAAAACTTAAGCTTTGATTTTTTTCTTCTAGTAGAAGAACTGAAT
CAGAATGTGGGCAAAATGGAAGACATATTTACTGAATTCCTTTCTCTTCA
CTTGTGTCTCCATCACCTTTTTCTAATAATGACCGTGGTCCCTAAAACAC
TTCCCCATCCCAAAGCTTCACTCTGTAATCAAGATGAAATTTAGCATTTG
AGAATATCATTTCTTAGTCTACTGGAGTTAGTTTACCACCAGTTCATTAC
CTGTAGTTCAGTTAGCTGATGGTAAATAATGTCTCGAATCCCCAATAACA
GTTTTAACTGGCGTTAGATTGTAGTTAGGCTTCCTGTATTATAAATATAT
ACTGTAAGCACAAACTCAGTACCAATTTTACTATTTTCCTCGTTTATCAA
TCAACAGAAAGTTGTCTAAAATTCTCTGTTTTCCCTAAACTCAGCATGGT
CCAGATCGTAGGAAATCACGATGGCTTCTCCCATTCCACCACCTTCCATG
TCTGTAGCCTCTTCTTTCCCACTCACTTTTTCTCGTGCATTTTCTTAAAA
ACTCAATGGAGATAATTTTCTTCTTTGCCTTAAACAAATTGTCAGTTATT
ATTAAAAGCCACAGGCTTGTCTTGTTCATCCTAAAACTCCACCGCACCTT
CTCACTGGACATGATTGCTACACGAGAGCTCTTAATTCTGAATACCTAGC
TTTTGAACAAGATCAGTTATTCTTGTCGTGGTTTCAATCTACCTGTTGCA
AGCACAAACTCAGTACCAATTGTTTATTTTTCATATTTCTAATGTACATG
AAGTCCTCTAAAACTCCCTCTATGTTTTCTTTGAACTCAAAGTAAGAGCC
ATATCTTGTACTCCTTATAGATCTTCCTTCAGTAATTTCTTGACATAAAT
GATTCAAGCTATATTTTATCATCCTTTACAGTAAAGCCCTTTCTTGTTGA
GTTCATTTTGTATTTCTGCATCAACGTATTTCTTCAACTCCTCATTGGCT
TTCCAAAGTACTTTGGCTCTGGCTATTGTAGATTCTATCCCCGAACCTTC
TGTTTGGGTTGATTTCTCCCAGTTTCCTATAGCGCAATCTATATATTGAT
GTTTTGGATGACTGATAACTTCTAAATGCGACCCTTTCTAAATGCAATCT
ATATATCCAGTTCTTATTATCTTTTCACATAGCATAATTCATCATCTTTG
GTAAAGAATCTGCCCAGCACCTTTAAATGTAGCCCTGACCTCTTCCTTCA
ATCCATTAAGAAAAACACTCCCATGAGATATTCAGGATCAGTACTTTGCG
TGGGTCTTGTGTAGTGCTCACATTGCTCATGGTATCCTTCGCAAGTGTTG
TGAGGCCCATTGTCATAGGGAAAATGTGGAGATGATAAGGTGATATTACC
TTTCCTAAAAGATAAAATTCATCTTGTATTGGGATTTCCTTATAAAAAAA
AAAACAAATTGCTTACATTGTAAAATTATGCCTATTAGTATTATTTGTAT
AGTGTGTTTGGACAGGGAATTTGAAAAGGGCAATTAATCTTTATAGAGAA
TTTGAAATGTTTTATAACAAGTCATTGTTTCTCATATTGATTTACAATGT
CGAAGAAAAGACACGGATAGTATATTCTATGATGTACAGATACAATACGT
ATCAGATACATATGCATATTTTGAAATTAATAGGATATGATACGTAATAC
ATGCATATTGAAAATGTACAAATTGAAAATGTACAAAAAATTCTTAGAAA
CATGATAAATATATGATTACTATTGTGTATATCCAAATTAAAATCAAATG
TATTAAAAAATTTCAACATAAAAATTTATAAATTATTATCATCATAAAAA
TATTATTAGTTTATGTATTAGATACTTTATTGACAAGTATCGGTAAAATA
TCTCAAAATATCGGATACGGGAATCATGATACAAATTGAAATATCGGTGC
ATATTTTCAAGTTCAAGTTGTGGGTGTAGTTGAGTGTATGCAATTATGAT
ATTAGAAAATATCTTACCATTTAACTATTTTAGGGGCTCCTCAGTCCTTT
TTTGCATTTGTATCTAATATTCAATATTCAGTCTTGGACTACCTGTCAGT
CATATGTATGCTCCAGCCGCGAGGCATTTAAATTAAAGCATTTATCTATT
TATCGTCTGTTGGCATATATATCTACACATATATTCAACTGTTTGTCTGG
TTATCTTGGGAGTGCAATTGTTTGTATTTCTGAGTTGATGTAGCTTCCGT
GGTTTAGCTTCTTATATTTGATGTTGAAACCTTGCAGGTTCCTGGATTCC
TCAAGATAAGGCATATTGGACAGACAACTCTAGGGAGTGCAGCTGTATTT
AGCCTGTTCCTTGCAGCAGGAACCTTGATACGATCTCACTAGTTTGTGCA
GTCATGGTGACGTGATTTCTTACAATTTTAGCCAACAGAAAAAAAAAAAA
GTCATGTAACCTCACAGTCTGTAATCTTTTGAGTGTTGGAATTAAATAAA
GATTTTTTTAAATAAACTGACTTCATATAATTAATTGACTTCATATTTTA
TTATCCATGCTAATGTCAAG

Coding sequence (CDS) from alignment at Vu01:3641242..3644511+

>Vigun01g029500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g029500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g029500.1; organism=Vigna unguiculata; type=CDS; length=216bp; location=Sequence derived from: Vu01:3641242..3644511+ (Vigna unguiculata
ATGGCTAGAGACAGCGTCCTCACTCGCGTGGCGACCGGAGCCGCCGTGGG
CGGTGCTATTGGCGGCGCAGTCGGTGCCGTTTATGGGACTTACGATGCAA
TTAGGTATAAGGTTCCTGGATTCCTCAAGATAAGGCATATTGGACAGACA
ACTCTAGGGAGTGCAGCTGTATTTAGCCTGTTCCTTGCAGCAGGAACCTT
GATACGATCTCACTAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR018450	Romo1/Mgr2

Search form

Vigun01g029500.1