Vigun01g030700.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun01g030700.1 vs. DB:Swiss
Match: RPE5C_ARATH (DNA-directed RNA polymerase V subunit 5C OS=Arabidopsis thaliana OX=3702 GN=NRPE5C PE=2 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 4.719e-57 Identity = 102/210 (48.57%), Postives = 136/210 (64.76%), Query Frame = 1 Query: 7 CIANLIDKGSVESSRYFLSRGTVLEMLADRGYDVVQHANLVSSLSDFRSRFGQQPNHEALGFCVSHLSNPSNTVQVAFAGTDTIKMTTVMEICSRIVDXXXXXXXXXXXXXXXTSYAHKKLMNLPFKVEIIRIEDLLINITKHVLQPKYEILTGEEKKALLTKHSLEEKQLPCMLRSDVIARYYGLETGQVVKITHSGPMVDSHVTYRCV 636 CI+ D G +ES R++L+R T EML DRGY+V A L +LS+FRS FG++P E L CV S+P + V F GT+ I + +V + +I ++ L ++I++LQSK+ +A K L PF VE IEDLL+NITKH+ QPK EIL EEK+ LL KH+LE+KQLP + D RYYGL+ QVVKIT+S V VTYRC+ Sbjct: 24 CISKTEDTGGIESKRFYLARTTAFEMLRDRGYEV-NEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQVVKITYSKEPVGDFVTYRCI 232
BLAST of Vigun01g030700.1 vs. DB:Swiss
Match: RPE5A_ARATH (DNA-directed RNA polymerase V subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPE5A PE=1 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 5.980e-53 Identity = 92/211 (43.60%), Postives = 139/211 (65.88%), Query Frame = 1 Query: 7 CIANLIDKGSVESSRYFLSRGTVLEMLADRGYDVV-QHANLVSSLSDFRSRFGQQPNHEALGFCVSHLSNPSNTVQVAFAGTDTIKMTTVMEICSRIVDXXXXXXXXXXXXXXXTSYAHKKLMNLPFKVEIIRIEDLLINITKHVLQPKYEILTGEEKKALLTKHSLEEKQLPCMLRSDVIARYYGLETGQVVKITHSGPMVDSHVTYRCV 636 C++ +D S ES RY+L+R L+ML DRGY+V + NL SL DFR+ +G++P+ + L H S+ + V++ F GT +K+ + + + I+ ++ LI++LQ+ +T+ A K + FKVEI +I DLL+NITKH L+P++++L EEK LL K S+EEKQLP + + D I RYYGLE GQVVK+ + G + +SHV +RCV Sbjct: 13 CLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINL--SLHDFRTVYGERPDVDRLRISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKGQVVKVNYRGELTESHVAFRCV 221
BLAST of Vigun01g030700.1 vs. DB:Swiss
Match: RPD5B_ARATH (DNA-directed RNA polymerases IV and V subunit 5B OS=Arabidopsis thaliana OX=3702 GN=NRPD5B PE=1 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.181e-51 Identity = 94/211 (44.55%), Postives = 139/211 (65.88%), Query Frame = 1 Query: 10 IANLIDKGSVESSRYFLSRGTVLEMLADRGYDVV-QHANLVSSLSDFRSRFGQQPNHEALGFCVSHLSNPSNTVQVAFAGTDTIKMTTVMEICSRIVDXXXXXXXXXXXXXXXTSYAHKKLMNLPFKVEIIRIEDLLINITKHVLQPKYEILTGEEKKALLTKHSLEEKQLPCMLRSDVIARYYGLETGQVVKITHSGPMVDSHVTYRCVA 639 + + I K SVE +Y+L+R T +EML DRGYDV + NL SL FR+ +G+ P+ + L H + S + V F GT +K+ + I + ++ ++ LI++LQS IT+ A K + FKVE+ I DLL+N++KHVL+PK+++L +EK++LL K S+EEKQLP + D I RYYGLETGQV+K+T+ + +SHVTYRCV+ Sbjct: 10 VGHSISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINL--SLQQFRALYGEHPDVDLLRISAKHRFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSFKVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETGQVMKVTYKDELSESHVTYRCVS 218
BLAST of Vigun01g030700.1 vs. DB:Swiss
Match: RPAB1_CAEBR (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae OX=6238 GN=rpb-5 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 1.554e-26 Identity = 67/208 (32.21%), Postives = 113/208 (54.33%), Query Frame = 1 Query: 34 SVESSRYFLSRGTVLEMLADRGYDVVQHANLVSSLSDFRSRFGQQPNHEA-----LGFCVSHLSNPSNTVQVAFAGTDTIKMTTVMEICSRIVDXXXXXXXXXXXXXXXTSYAHKKL--MNLPFKVEIIRIEDLLINITKHVLQPKYEILTGEEKKALLTKHSLEEKQLPCMLRSDVIARYYGLETGQVVKITHSGPMVDSHVTYRCV 636 +E+ R + R TVL+M+ DRGY V Q L L F+ FG +P+ + L V+H +P++ + V F I + T+ IC ++ + +++I++ S A + + M + +E +L++NIT+H L P++ ++T EEK LL ++ L++ QLP + + D +ARY+GL GQVVKI ++TYR V Sbjct: 5 ELETYRLWRIRKTVLQMVHDRGYLVAQE-ELDQPLETFKETFGDRPSEKKPARSDLTILVAHNDDPADQMFVFFPEDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPS-AKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLV 210
BLAST of Vigun01g030700.1 vs. DB:Swiss
Match: RPAB1_CAEEL (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans OX=6239 GN=rpb-5 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 5.936e-26 Identity = 66/208 (31.73%), Postives = 114/208 (54.81%), Query Frame = 1 Query: 34 SVESSRYFLSRGTVLEMLADRGYDVVQHANLVSSLSDFRSRFGQQPNHEA-----LGFCVSHLSNPSNTVQVAFAGTDTIKMTTVMEICSRIVDXXXXXXXXXXXXXXXTSYAHKKL--MNLPFKVEIIRIEDLLINITKHVLQPKYEILTGEEKKALLTKHSLEEKQLPCMLRSDVIARYYGLETGQVVKITHSGPMVDSHVTYRCV 636 +E+ R + R TVL+M+ DRGY V Q L L F+ ++G +P+ + L V+H +P++ + V F I + T+ IC ++ + +++I++ S A + + M + +E +L++NIT+H L P++ ++T EEK LL ++ L++ QLP + + D +ARY+GL GQVVKI ++TYR V Sbjct: 5 ELETYRLWRIRKTVLQMVHDRGYLVAQD-ELDQPLETFKVQYGDRPSEKKPARSDLTILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPS-AKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLV 210
BLAST of Vigun01g030700.1 vs. DB:Swiss
Match: RPAB1_PONAB (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=9601 GN=POLR2E PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 6.049e-26 Identity = 68/206 (33.01%), Postives = 115/206 (55.83%), Query Frame = 1 Query: 40 ESSRYFLSRGTVLEMLADRGYDVVQHANLVSSLSDFRSRFGQQPNH-----EALGFCVSHLSNPSNTVQVAFAGTDTIKMTTVMEICSRIVDXXXXXXXXXXXXXXXTSYAHKKLMNLPFK--VEIIRIEDLLINITKHVLQPKYEILTGEEKKALLTKHSLEEKQLPCMLRSDVIARYYGLETGQVVKITHSGPMVDSHVTYRCV 636 E+ R + R T++++ DRGY V Q L +L +FR++FG +P+ L V+H +P++ + V F + + T+ C R+ + ++LI++ Q S A + L+++ K +E ++LLINIT+H L P++ ++T EE LL ++ L E QLP + D +ARY+G++ GQVVKI ++TYR V Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQD-ELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPS-AKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209
BLAST of Vigun01g030700.1 vs. DB:Swiss
Match: RPAB1_RAT (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus OX=10116 GN=Polr2e PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 2.408e-25 Identity = 67/206 (32.52%), Postives = 115/206 (55.83%), Query Frame = 1 Query: 40 ESSRYFLSRGTVLEMLADRGYDVVQHANLVSSLSDFRSRFGQQPNH-----EALGFCVSHLSNPSNTVQVAFAGTDTIKMTTVMEICSRIVDXXXXXXXXXXXXXXXTSYAHKKLMNLPFK--VEIIRIEDLLINITKHVLQPKYEILTGEEKKALLTKHSLEEKQLPCMLRSDVIARYYGLETGQVVKITHSGPMVDSHVTYRCV 636 E+ R + R T++++ DRGY V Q L +L +F+++FG +P+ L V+H +P++ + V F + + T+ C R+ + ++LI++ Q S A + L+++ K +E ++LLINIT+H L P++ ++T EE LL ++ L E QLP + D +ARY+G++ GQVVKI ++TYR V Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQD-ELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPS-AKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209
BLAST of Vigun01g030700.1 vs. DB:Swiss
Match: RPAB1_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10090 GN=Polr2e PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 2.408e-25 Identity = 67/206 (32.52%), Postives = 115/206 (55.83%), Query Frame = 1 Query: 40 ESSRYFLSRGTVLEMLADRGYDVVQHANLVSSLSDFRSRFGQQPNH-----EALGFCVSHLSNPSNTVQVAFAGTDTIKMTTVMEICSRIVDXXXXXXXXXXXXXXXTSYAHKKLMNLPFK--VEIIRIEDLLINITKHVLQPKYEILTGEEKKALLTKHSLEEKQLPCMLRSDVIARYYGLETGQVVKITHSGPMVDSHVTYRCV 636 E+ R + R T++++ DRGY V Q L +L +F+++FG +P+ L V+H +P++ + V F + + T+ C R+ + ++LI++ Q S A + L+++ K +E ++LLINIT+H L P++ ++T EE LL ++ L E QLP + D +ARY+G++ GQVVKI ++TYR V Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQD-ELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPS-AKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209
BLAST of Vigun01g030700.1 vs. DB:Swiss
Match: RPAB1_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Bos taurus OX=9913 GN=POLR2E PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 2.678e-25 Identity = 67/206 (32.52%), Postives = 115/206 (55.83%), Query Frame = 1 Query: 40 ESSRYFLSRGTVLEMLADRGYDVVQHANLVSSLSDFRSRFGQQPNH-----EALGFCVSHLSNPSNTVQVAFAGTDTIKMTTVMEICSRIVDXXXXXXXXXXXXXXXTSYAHKKLMNLPFK--VEIIRIEDLLINITKHVLQPKYEILTGEEKKALLTKHSLEEKQLPCMLRSDVIARYYGLETGQVVKITHSGPMVDSHVTYRCV 636 E+ R + R T++++ DRGY V Q L +L +F+++FG +P+ L V+H +P++ + V F + + T+ C R+ + ++LI++ Q S A + L+++ K +E ++LLINIT+H L P++ ++T EE LL ++ L E QLP + D +ARY+G++ GQVVKI ++TYR V Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDG-LDQTLEEFKAQFGGKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPS-AKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209
BLAST of Vigun01g030700.1 vs. DB:Swiss
Match: RPAB1_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens OX=9606 GN=POLR2E PE=1 SV=4) HSP 1 Score: 97.8265 bits (242), Expect = 5.684e-24 Identity = 66/206 (32.04%), Postives = 114/206 (55.34%), Query Frame = 1 Query: 40 ESSRYFLSRGTVLEMLADRGYDVVQHANLVSSLSDFRSRFGQQPNH-----EALGFCVSHLSNPSNTVQVAFAGTDTIKMTTVMEICSRIVDXXXXXXXXXXXXXXXTSYAHKKLMNLPFK--VEIIRIEDLLINITKHVLQPKYEILTGEEKKALLTKHSLEEKQLPCMLRSDVIARYYGLETGQVVKITHSGPMVDSHVTYRCV 636 E+ R + R T++++ DRGY V Q L +L +F+++ G +P+ L V+H +P++ + V F + + T+ C R+ + ++LI++ Q S A + L+++ K +E ++LLINIT+H L P++ ++T EE LL ++ L E QLP + D +ARY+G++ GQVVKI ++TYR V Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQD-ELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPS-AKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209 The following BLAST results are available for this feature:
BLAST of Vigun01g030700.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g030700.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g030700.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g030700.1; organism=Vigna unguiculata; type=mRNA; length=1015bpback to top protein sequence of Vigun01g030700.1_Vu_IT97K-499-35_v1.1 >Vigun01g030700.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g030700.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g030700.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=214bpback to top mRNA from alignment at Vu01:3849273..3851334+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun01g030700.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g030700.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g030700.1; organism=Vigna unguiculata; type=mRNA; length=2062bp; location=Sequence derived from: Vu01:3849273..3851334+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu01:3849273..3851334+ >Vigun01g030700.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g030700.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g030700.1; organism=Vigna unguiculata; type=CDS; length=642bp; location=Sequence derived from: Vu01:3849273..3851334+ (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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