Vigun01g040600.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun01g040600.1 vs. DB:Swiss
Match: BH130_ARATH (Transcription factor bHLH130 OS=Arabidopsis thaliana OX=3702 GN=BHLH130 PE=1 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.625e-38 Identity = 100/253 (39.53%), Postives = 138/253 (54.55%), Query Frame = 1 Query: 535 SNLFRQKSSPAGFF---SIENDLAALREVGGFKGNDVSNRQAITXXXXXXXXXXXXXXXXXXXKQMPQIAEDGKESLQENCDQSRILVNEDGDSKFYIPSFTTDIWETSSFNAPKTESDDEIMFSTSNGLESQESDFSYQNLGLTHHXX--XXXXXXXXXXXIEKFLEVQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLRQQVKVLSDCKAKCKCTSTE 1278
SNL RQ SSPAG F S +N ++R + ++ ++ S + S + L Q+P+IA + D S + N SS + E D ++ NG L+HHLS +S+ S++K+L++Q SVPCKIRAKRG ATHPRSIAERVRRTRISER++KLQ+L P +KQT+T+DMLDLAV+YIKDL++Q K+L+D +A CKC + E
Sbjct: 129 SNLLRQSSSPAGMFTNLSDQNGYGSMRNLMNYEEDEESPSNS-NGLRRHCSLSSRPPSSLGMLSQIPEIAPETNFPYSHWNDPSSFIDN------------------LSSLKR-EAEDDGKLFLGAQNGESGNRMQL------LSHHLSLPKSSSTASDMVSVDKYLQLQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQYKILNDNRANCKCMNKE 355
BLAST of Vigun01g040600.1 vs. DB:Swiss
Match: BH122_ARATH (Transcription factor bHLH122 OS=Arabidopsis thaliana OX=3702 GN=BHLH122 PE=1 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 1.354e-36 Identity = 107/255 (41.96%), Postives = 146/255 (57.25%), Query Frame = 1 Query: 532 CSNLFRQKSSPAGFFS---IENDLAA-LREVGGFKGNDVSNRQAITXXXXXXXXXXXXXXXXXXXKQMPQIAE-DGKESLQENCDQSRILVNEDGDSKFYIPSFTTDIWETSSFNAPKTESDDEIMFSTSNGLE---SQESDFSYQNLGLTHHXXXXXXXXXXXXXIEKFLEVQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLRQQVKVLSDCKAKCKCTS 1272
+NL R SSPAG FS +E AA ++ +GGF G++V + TS + SS S + M I+E D K R L S + SF + +S A + + S GL+ +++ D + + L HH+SLP S + IE+ L S+PCKIRAKRG ATHPRSIAERVRRT+ISER++KLQDL P + QT+TADMLDLAV+YIKDL++QVK L + +A+C+C+S
Sbjct: 149 VNNLARHNSSPAGLFSSIDVETAYAAVMKSMGGFGGSNVMS----TSNTEASSLTPRSKLLPPTSRAMSPISEVDVKPGFSSRL-PPRTL------SGGFNRSFGNEGSASSKLTA--------LARTQSGGLDQYKTKDEDSASRRPPLAHHMSLPKSLSD----IEQLL--SDSIPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQEQVKALEESRARCRCSS 378
BLAST of Vigun01g040600.1 vs. DB:Swiss
Match: BH080_ARATH (Transcription factor bHLH80 OS=Arabidopsis thaliana OX=3702 GN=BHLH80 PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.376e-28 Identity = 52/82 (63.41%), Postives = 69/82 (84.15%), Query Frame = 1 Query: 1033 SVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLRQQVKVLSDCKAKCKCTSTE 1278
SVPC++RAKRG ATHPRSIAERVRRTRIS+RI++LQ+L P +KQT+TADML+ AVEY+K L+ Q++ L++ + +CKC E
Sbjct: 176 SVPCRVRAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQELTEQQKRCKCKPKE 257
BLAST of Vigun01g040600.1 vs. DB:Swiss
Match: BH128_ARATH (Transcription factor bHLH128 OS=Arabidopsis thaliana OX=3702 GN=BHLH128 PE=1 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 9.269e-27 Identity = 54/92 (58.70%), Postives = 71/92 (77.17%), Query Frame = 1 Query: 1006 IEKFLEV-QGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLRQQVKVLSDCKAKCKCTSTE 1278
++ F+++ + SVPCKIRAKRG ATHPRSIAER RRTRIS ++KKLQDL P +KQTS +DMLDLAV++IK L+ Q++ L + C C +E
Sbjct: 268 MDNFMQLPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQLQNLKKDQENCTCGCSE 359
BLAST of Vigun01g040600.1 vs. DB:Swiss
Match: BH129_ARATH (Transcription factor bHLH129 OS=Arabidopsis thaliana OX=3702 GN=BHLH129 PE=3 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 6.363e-26 Identity = 52/78 (66.67%), Postives = 64/78 (82.05%), Query Frame = 1 Query: 1006 IEKFLEV-QGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLRQQVKV 1236
+E + + + SVPC+ RAKRGFATHPRSIAER RRTRIS ++KKLQ+L P +KQTS ADMLDLAVE+IK L+ QV+V
Sbjct: 218 MENLMNIPEDSVPCRARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQHQVEV 295
BLAST of Vigun01g040600.1 vs. DB:Swiss
Match: BH081_ARATH (Transcription factor bHLH81 OS=Arabidopsis thaliana OX=3702 GN=BHLH81 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.584e-25 Identity = 50/85 (58.82%), Postives = 69/85 (81.18%), Query Frame = 1 Query: 1024 VQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLRQQVKVLSDCKAKCKCTSTE 1278
++ SV ++RAKRG ATHPRSIAERVRRTRIS+RI+KLQ+L P +KQT+TADML+ AVEY+K L++Q++ L++ + +C C E
Sbjct: 176 MEDSVAFRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQELTEEQKRCTCIPKE 260
BLAST of Vigun01g040600.1 vs. DB:Swiss
Match: BH066_ARATH (Transcription factor bHLH66 OS=Arabidopsis thaliana OX=3702 GN=BHLH66 PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.347e-14 Identity = 40/67 (59.70%), Postives = 49/67 (73.13%), Query Frame = 1 Query: 1042 CKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLRQQVKVLS 1242
KIRA+RG AT P SIAER+RR RI+ER+K LQ+L P K T A MLD ++Y+K L+ QVKVLS
Sbjct: 136 TKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNK-TDKASMLDEIIDYVKFLQLQVKVLS 201
BLAST of Vigun01g040600.1 vs. DB:Swiss
Match: BH082_ARATH (Transcription factor bHLH82 OS=Arabidopsis thaliana OX=3702 GN=BHLH82 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 2.068e-14 Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 1 Query: 1045 KIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLRQQVKVLS 1242
++RA+RG AT P SIAER+RR RI+ER+K LQ+L P + K T A MLD +EY++ L+ QVKVLS
Sbjct: 98 RVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNK-TDKASMLDEIIEYVRFLQLQVKVLS 162
BLAST of Vigun01g040600.1 vs. DB:Swiss
Match: BH069_ARATH (Transcription factor bHLH69 OS=Arabidopsis thaliana OX=3702 GN=BHLH69 PE=2 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 2.629e-14 Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1 Query: 1045 KIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLRQQVKVLS 1242
K+RA+RG AT P SIAER+RR RI+ER+K LQ+L P K T A MLD ++Y+K L+ QVKVLS
Sbjct: 129 KVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNK-TDKASMLDEIIDYVKFLQLQVKVLS 193
BLAST of Vigun01g040600.1 vs. DB:Swiss
Match: BH075_ARATH (Transcription factor bHLH75 OS=Arabidopsis thaliana OX=3702 GN=BHLH75 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.040e-13 Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1 Query: 1048 IRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLRQQVKVLS 1242
+RAKRG AT S+AERVRR +I+ER+K LQDL P K A MLD+ ++Y++ L+ Q++ LS
Sbjct: 104 VRAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQNQIEFLS 168 The following BLAST results are available for this feature:
BLAST of Vigun01g040600.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g040600.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g040600.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g040600.1; organism=Vigna unguiculata; type=mRNA; length=2166bpback to top protein sequence of Vigun01g040600.1_Vu_IT97K-499-35_v1.1 >Vigun01g040600.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g040600.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g040600.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=435bpback to top mRNA from alignment at Vu01:5660740..5663651- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun01g040600.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g040600.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g040600.1; organism=Vigna unguiculata; type=mRNA; length=2912bp; location=Sequence derived from: Vu01:5660740..5663651- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu01:5660740..5663651- >Vigun01g040600.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g040600.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g040600.1; organism=Vigna unguiculata; type=CDS; length=1305bp; location=Sequence derived from: Vu01:5660740..5663651- (Vigna unguiculataback to top |