Vigun01g079300.1

Transcript Overview
NameVigun01g079300.1
Unique NameVigun01g079300.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length1536
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu01supercontigVu01:22446018..22447553 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
psvuL193Pisum sativum Cameor genome v1aPisum sativum
pvvuL009Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL404Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL163Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anvuL0078Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0653Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0873Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1078Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL209Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL404Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL411Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR020Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL581Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL538Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL001Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL130Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL276Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL163Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR000Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR013Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
avjvuL002Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL337Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL343Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL159Cicer arietinum
ccavuL505Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL559Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR029Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR036Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR048Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL141Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL307Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL311Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL152Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL324Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL330Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL006Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL359Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR000Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR012Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan03g184200Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Phvul.001G084200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigst.04G143700.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
PvulFLAVERTChr01.1000573Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vum_04G01619.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Va03G057350.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
evm.model.Chr01.790Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigan.04G230600.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-XM_022777644.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun01g079300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun01g079300Vigun01g079300_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g079300.1Vigun01g079300.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun01g079300.1_Vu_IT97K-499-35_v1.1Vigun01g079300.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g079300.1.v1.1.five_prime_UTR.1Vigun01g079300.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g079300.1.v1.1.CDS.1Vigun01g079300.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g079300.1.v1.1.three_prime_UTR.1Vigun01g079300.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Vigun01g079300.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006904Protein of unknown function DUF716PFAMPF04819DUF716coord: 110..243
e-value: 1.3E-39
score: 135.0

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun01g079300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g079300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g079300.1; organism=Vigna unguiculata; type=mRNA; length=1536bp
ATTCCGGCAGCGTTTGGTGGAAGCTTCCGGGGAAAGTTTCGGAAGCTGGC
AGCATCCACATTTGACCTTTGACCCAAACCCAAATCAAAATCATTCTGGG
ATCGAATTTTGGGCGCAGACGCGGCAGAGAAGCGATTCAATCAATGGAAC
TATTCTCCTTTGCGTTGGGAGGCGTTGGGTTCATTCTCGTGGGAGCACAC
GAAGCGCTTCTTCACGTTTCCCCATCCAAACAATCCCCAATCTCTTCCGC
TTCATCTTCTCCGCCCAATTCCCGAACCAACAAACTCTTATTTCCGATCT
CCCTCGCAATTCTCTCCTCATTTTTCATCCTCAACTCCACACTGTCCCTT
CTCAGCGCACACAACTCAAACGACGCCGTCGGCACCGCGCTTCAGCTCCA
GGTcctccccatcggcttcatcttcctcttctactcccttcttcctctct
tctctctcccttcGCCTTTGCACGGCCTCGTTGGCCTCTTCGCTTTCGCC
CAAGAGTTTCTCCTCTTCTACCTTCAGCGCAAGGACCCCAGCGGCGTCGA
GAACCGTTACTATGATCTCTTGCTGGTTCCCATCGCAATCTGCCTTCTCT
GCACGCTTCTCGATGTGGGATCTCCGCGCTCCAGTGTTCCCAAACTGGGC
CGCGGCGTCGGCCTCATTCTCCACGGAACATGGCTTCTCCAAATGGGCCT
TTCCCTCTTCTCGGGCTGGGTGGCCCAGGGGTGCTCTATGCACCGAGTGA
GCAGAGGGAACTACACGCTGAGGTGCAAGGGGCACCCGGAGTATCATAGG
GCCAGGGCCATAGCCACGCTTCAGTTCAATTGCCACCTCGCGCTCTTGGT
GGTGCTTCTTGTTGGCTTCTTCTCCCTTGTTTGCGCCAGAAACGGAGGAG
GAACCCACCTTGACTCCGTTTCCACGCGGTACGCGCCACTCGGTGCTGAA
TTGCAGAATATGCAGGAGTCGACAAAATTCACTTTGGACTCtgatgaaga
tgatgatgatgataatgCCATACAAGAGGGCCACAATGTGGGTAACAAGA
AAGGAGTTGCTGTGGAACATGCTGTCAACGGTAATGGGGTAATGCCTCTC
ACCACTCAGTGAATCATGTTAGGAACACGCTCTCTTCTGAAAGTTATTAC
ACATTAGAAACTATGAAGCCATGATAAAGATACATATTACTTGATATGAC
ATGTGACATAGAAATTTTGCATTTTGAATAAATTTCAACCCTGAGAGCTT
GTACTGAAAAGAGTCTGCCTGAGAGTGTCTATTTCTTCGTATAGTGTATT
TTGCTGTCTTCTCTTGTTTTCTTCTATGTTAGGAGAACAATTCTTTGTAT
AAAGGAGTTGGTTGGTTTATATTGATTTGATTTGTTGCTGTTTTACGTTT
CATATGTTTGGCTAATAATACCAGTGCAACGAGCTCTTAATTAGTACTTC
AGATTGAATTATGCGATTCAGAGTAGCTGTGATGCAAATTTCTTTAAAGT
CTGGATGTTTTTATTTTTATTTTAATTTGTTTAGAA
back to top

protein sequence of Vigun01g079300.1_Vu_IT97K-499-35_v1.1

>Vigun01g079300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g079300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g079300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=323bp
MELFSFALGGVGFILVGAHEALLHVSPSKQSPISSASSSPPNSRTNKLLF
PISLAILSSFFILNSTLSLLSAHNSNDAVGTALQLQVLPIGFIFLFYSLL
PLFSLPSPLHGLVGLFAFAQEFLLFYLQRKDPSGVENRYYDLLLVPIAIC
LLCTLLDVGSPRSSVPKLGRGVGLILHGTWLLQMGLSLFSGWVAQGCSMH
RVSRGNYTLRCKGHPEYHRARAIATLQFNCHLALLVVLLVGFFSLVCARN
GGGTHLDSVSTRYAPLGAELQNMQESTKFTLDSDEDDDDDNAIQEGHNVG
NKKGVAVEHAVNGNGVMPLTTQ*
back to top

mRNA from alignment at Vu01:22446018..22447553+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun01g079300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g079300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g079300.1; organism=Vigna unguiculata; type=mRNA; length=1536bp; location=Sequence derived from: Vu01:22446018..22447553+ (Vigna unguiculata
ATTCCGGCAGCGTTTGGTGGAAGCTTCCGGGGAAAGTTTCGGAAGCTGGC
AGCATCCACATTTGACCTTTGACCCAAACCCAAATCAAAATCATTCTGGG
ATCGAATTTTGGGCGCAGACGCGGCAGAGAAGCGATTCAATCAATGGAAC
TATTCTCCTTTGCGTTGGGAGGCGTTGGGTTCATTCTCGTGGGAGCACAC
GAAGCGCTTCTTCACGTTTCCCCATCCAAACAATCCCCAATCTCTTCCGC
TTCATCTTCTCCGCCCAATTCCCGAACCAACAAACTCTTATTTCCGATCT
CCCTCGCAATTCTCTCCTCATTTTTCATCCTCAACTCCACACTGTCCCTT
CTCAGCGCACACAACTCAAACGACGCCGTCGGCACCGCGCTTCAGCTCCA
GGTCCTCCCCATCGGCTTCATCTTCCTCTTCTACTCCCTTCTTCCTCTCT
TCTCTCTCCCTTCGCCTTTGCACGGCCTCGTTGGCCTCTTCGCTTTCGCC
CAAGAGTTTCTCCTCTTCTACCTTCAGCGCAAGGACCCCAGCGGCGTCGA
GAACCGTTACTATGATCTCTTGCTGGTTCCCATCGCAATCTGCCTTCTCT
GCACGCTTCTCGATGTGGGATCTCCGCGCTCCAGTGTTCCCAAACTGGGC
CGCGGCGTCGGCCTCATTCTCCACGGAACATGGCTTCTCCAAATGGGCCT
TTCCCTCTTCTCGGGCTGGGTGGCCCAGGGGTGCTCTATGCACCGAGTGA
GCAGAGGGAACTACACGCTGAGGTGCAAGGGGCACCCGGAGTATCATAGG
GCCAGGGCCATAGCCACGCTTCAGTTCAATTGCCACCTCGCGCTCTTGGT
GGTGCTTCTTGTTGGCTTCTTCTCCCTTGTTTGCGCCAGAAACGGAGGAG
GAACCCACCTTGACTCCGTTTCCACGCGGTACGCGCCACTCGGTGCTGAA
TTGCAGAATATGCAGGAGTCGACAAAATTCACTTTGGACTCTGATGAAGA
TGATGATGATGATAATGCCATACAAGAGGGCCACAATGTGGGTAACAAGA
AAGGAGTTGCTGTGGAACATGCTGTCAACGGTAATGGGGTAATGCCTCTC
ACCACTCAGTGAATCATGTTAGGAACACGCTCTCTTCTGAAAGTTATTAC
ACATTAGAAACTATGAAGCCATGATAAAGATACATATTACTTGATATGAC
ATGTGACATAGAAATTTTGCATTTTGAATAAATTTCAACCCTGAGAGCTT
GTACTGAAAAGAGTCTGCCTGAGAGTGTCTATTTCTTCGTATAGTGTATT
TTGCTGTCTTCTCTTGTTTTCTTCTATGTTAGGAGAACAATTCTTTGTAT
AAAGGAGTTGGTTGGTTTATATTGATTTGATTTGTTGCTGTTTTACGTTT
CATATGTTTGGCTAATAATACCAGTGCAACGAGCTCTTAATTAGTACTTC
AGATTGAATTATGCGATTCAGAGTAGCTGTGATGCAAATTTCTTTAAAGT
CTGGATGTTTTTATTTTTATTTTAATTTGTTTAGAA
back to top

Coding sequence (CDS) from alignment at Vu01:22446018..22447553+

>Vigun01g079300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g079300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g079300.1; organism=Vigna unguiculata; type=CDS; length=969bp; location=Sequence derived from: Vu01:22446018..22447553+ (Vigna unguiculata
ATGGAACTATTCTCCTTTGCGTTGGGAGGCGTTGGGTTCATTCTCGTGGG
AGCACACGAAGCGCTTCTTCACGTTTCCCCATCCAAACAATCCCCAATCT
CTTCCGCTTCATCTTCTCCGCCCAATTCCCGAACCAACAAACTCTTATTT
CCGATCTCCCTCGCAATTCTCTCCTCATTTTTCATCCTCAACTCCACACT
GTCCCTTCTCAGCGCACACAACTCAAACGACGCCGTCGGCACCGCGCTTC
AGCTCCAGGTCCTCCCCATCGGCTTCATCTTCCTCTTCTACTCCCTTCTT
CCTCTCTTCTCTCTCCCTTCGCCTTTGCACGGCCTCGTTGGCCTCTTCGC
TTTCGCCCAAGAGTTTCTCCTCTTCTACCTTCAGCGCAAGGACCCCAGCG
GCGTCGAGAACCGTTACTATGATCTCTTGCTGGTTCCCATCGCAATCTGC
CTTCTCTGCACGCTTCTCGATGTGGGATCTCCGCGCTCCAGTGTTCCCAA
ACTGGGCCGCGGCGTCGGCCTCATTCTCCACGGAACATGGCTTCTCCAAA
TGGGCCTTTCCCTCTTCTCGGGCTGGGTGGCCCAGGGGTGCTCTATGCAC
CGAGTGAGCAGAGGGAACTACACGCTGAGGTGCAAGGGGCACCCGGAGTA
TCATAGGGCCAGGGCCATAGCCACGCTTCAGTTCAATTGCCACCTCGCGC
TCTTGGTGGTGCTTCTTGTTGGCTTCTTCTCCCTTGTTTGCGCCAGAAAC
GGAGGAGGAACCCACCTTGACTCCGTTTCCACGCGGTACGCGCCACTCGG
TGCTGAATTGCAGAATATGCAGGAGTCGACAAAATTCACTTTGGACTCTG
ATGAAGATGATGATGATGATAATGCCATACAAGAGGGCCACAATGTGGGT
AACAAGAAAGGAGTTGCTGTGGAACATGCTGTCAACGGTAATGGGGTAAT
GCCTCTCACCACTCAGTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR006904DUF716