Vigun01g084200.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun01g084200.1 vs. DB:Swiss
Match: SIP12_MAIZE (Aquaporin SIP1-2 OS=Zea mays OX=4577 GN=SIP1-2 PE=2 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 9.542e-72 Identity = 134/223 (60.09%), Postives = 175/223 (78.48%), Query Frame = 1 Query: 37 VLTFMWVFCSSVLGIASGYVTKALNLQDISYNGFPYPSXXXXXXXXXXXXXXXXXXGNALGGASFNPTGTASFYAVGLGSDTLFSMALRFPXXXXXXXXXXXXIMEVIPEKYRHMIGGPSLKVDLHTGAVVEGXXXXXXXXXXXXXXXKGPRSDLLKTWFLATATVVLVMVGSAYTGPAMNPANAFGWAYLNNWHNTWDQLYVYWICPFAGAILAAWLFRAVF 705 V+TF+WV C S LG ++ VT L LQ + + + +VT++L+ +L+F+F ++ +ALGGASFNPTG A+FYA G+ S +LFS+ALR PAQA GA GGA+AI E++P +YRHM+GGPSLKVD HTGA E +LTF IT VL I +KGPR+ ++KTW ++ T+ LV+ G+AYTGP+MNPANAFGWAY+NN HNTW+Q YVYWICPF GAILAAW+FRA+F Sbjct: 15 VVTFLWVLCVSTLGASTTAVTSYLRLQGVHF------ALLVTVSLLSVLLFVFNILCDALGGASFNPTGVAAFYAAGVTSPSLFSIALRLPAQAAGAVGGALAISELMPAQYRHMLGGPSLKVDPHTGAGAELVLTFVITLAVLLIIVKGPRNPIIKTWMISICTLCLVLSGAAYTGPSMNPANAFGWAYVNNRHNTWEQFYVYWICPFIGAILAAWIFRAMF 231
BLAST of Vigun01g084200.1 vs. DB:Swiss
Match: SIP11_ORYSJ (Aquaporin SIP1-1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIP1-1 PE=2 SV=2) HSP 1 Score: 219.164 bits (557), Expect = 2.690e-70 Identity = 137/224 (61.16%), Postives = 175/224 (78.12%), Query Frame = 1 Query: 43 TFMWVFCSSVLGIASGYVTKALNLQDISYNGFPYPSXXXXXXXXXXXXXXXXXXGNALGGASFNPTGTASFYAVGLGS---DTLFSMALRFPXXXXXXXXXXXXIMEVIPEKYRHMIGGPSLKVDLHTGAVVEGXXXXXXXXXXXXXXXKGPRSDLLKTWFLATATVVLVMVGSAYTGPAMNPANAFGWAYLNNWHNTWDQLYVYWICPFAGAILAAWLFRAVF 705 TF+WV C S LG ++ VT L + + G Y + +VT++L+ +L+F F L+ +ALGGASFNPT A+F+A GL S +LF +ALRFPAQA GA GGAMAI E++PE+Y+HM+GGPSLKVDLHTGA E +LTF IT VL+I +KGPR+ ++KTW L+ +TV LV+ G+AYTGP+MNPANAFGWAY+NN HNTW+Q YVYWICPF GA+LAAW+FRAVF Sbjct: 16 TFLWVLCVSTLGASTAAVTSYLRIHE----GIHY-ALLVTVSLLSVLLFAFNLLCDALGGASFNPTALAAFHAAGLSSPRHSSLFPLALRFPAQAAGAVGGAMAISELMPEQYKHMLGGPSLKVDLHTGAAAELVLTFVITLAVLWIIVKGPRNPIVKTWMLSISTVCLVLTGAAYTGPSMNPANAFGWAYVNNRHNTWEQFYVYWICPFVGAVLAAWVFRAVF 234
BLAST of Vigun01g084200.1 vs. DB:Swiss
Match: SIP11_MAIZE (Aquaporin SIP1-1 OS=Zea mays OX=4577 GN=SIP1-1 PE=2 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 8.917e-67 Identity = 129/220 (58.64%), Postives = 170/220 (77.27%), Query Frame = 1 Query: 46 FMWVFCSSVLGIASGYVTKALNLQDISYNGFPYPSXXXXXXXXXXXXXXXXXXGNALGGASFNPTGTASFYAVGLGSDTLFSMALRFPXXXXXXXXXXXXIMEVIPEKYRHMIGGPSLKVDLHTGAVVEGXXXXXXXXXXXXXXXKGPRSDLLKTWFLATATVVLVMVGSAYTGPAMNPANAFGWAYLNNWHNTWDQLYVYWICPFAGAILAAWLFRAVF 705 F+WV C+S LG ++ VT L +Q+ G + + +VT +L+ +L+F F L+ ALGGASFNPT A+ YA GL S +LFS+ALRFPAQA GA GGA+AI E++P +Y+H + GPSLKVD HTGA+ EG+LTF IT VL++ +KGPR+ +LKT L+T+ V +++ G+ YTGP+MNPANAFGWAY+NNWHNTW+QLYVYWICPF GA+LA W+FR VF Sbjct: 18 FLWVLCASALGASTAAVTSYLGVQE----GAGHYALLVTTSLLSVLLFTFDLLCGALGGASFNPTDFAASYAAGLDSPSLFSVALRFPAQAAGAVGGALAISELMPAQYKHTLAGPSLKVDPHTGALAEGVLTFVITLTVLWVIVKGPRNVILKTLLLSTSIVSVILAGAEYTGPSMNPANAFGWAYVNNWHNTWEQLYVYWICPFIGAMLAGWIFRVVF 233
BLAST of Vigun01g084200.1 vs. DB:Swiss
Match: SIP11_ARATH (Aquaporin SIP1-1 OS=Arabidopsis thaliana OX=3702 GN=SIP1-1 PE=2 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 1.006e-64 Identity = 127/235 (54.04%), Postives = 166/235 (70.64%), Query Frame = 1 Query: 1 MVGAIKAAIGDGVLTFMWVFCSSVLGIASGYVTKALNLQDISYNGFPYPSXXXXXXXXXXXXXXXXXXGNALGGASFNPTGTASFYAVGLGSDTLFSMALRFPXXXXXXXXXXXXIMEVIPEKYRHMIGGPSLKVDLHTGAVVEGXXXXXXXXXXXXXXXKGPRSDLLKTWFLATATVVLVMVGSAYTGPAMNPANAFGWAYLNNWHNTWDQLYVYWICPFAGAILAAWLFRAVF 705 M+G +K+AIGD ++TF WV S+ GI + + A + Q I++ + ++ + + V G ASFNPTG+A+FY G+ DTLFS+A+R PAQA+GAAGGA+AIME IPEKY+HMIGGPSL+VD+HTGA+ E +L+F ITF VL I L+GPR L KT+ LA AT+ V+ GS YTGPAMNPA AFGWAY+ + HNTWD +YVYWI F GA+ AA LFR++F Sbjct: 1 MMGVLKSAIGDMLMTFSWVVLSATFGIQTAAIISAGDFQAITWAPLVILTSLIFVYVSIFTVI--------FGSASFNPTGSAAFYVAGVPGDTLFSLAIRLPAQAIGAAGGALAIMEFIPEKYKHMIGGPSLQVDVHTGAIAETILSFGITFAVLLIILRGPRRLLAKTFLLALATISFVVAGSKYTGPAMNPAIAFGWAYMYSSHNTWDHIYVYWISSFVGALSAALLFRSIF 227
BLAST of Vigun01g084200.1 vs. DB:Swiss
Match: SIP12_ARATH (Probable aquaporin SIP1-2 OS=Arabidopsis thaliana OX=3702 GN=SIP1-2 PE=2 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 1.002e-60 Identity = 131/248 (52.82%), Postives = 177/248 (71.37%), Query Frame = 1 Query: 4 VGAIKAAIGDGVLTFMWVFCSSVLGIASGYVTKALNLQDISYNGFPYPSXXXXXXXXXXXXXXXXXXGNALGGASFNPTGTASFYAVGLGSDTLFSMALRFPXXXXXXXXXXXXIMEVIPEKYRHMIGG-PSLKVDLHTGAVVEGXXXXXXXXXXXXXXXKGPRSDLLKTWFLATATVVLVMVGSAYTGPAMNPANAFGWAYLNNWHNTWDQLYVYWICPFAGAILAAWLFRAVFXXXXXXELKQKKA 744 + A+K+A+GD V+TF+WV S+ GI + + A + ++G + +++ +VF+ + +FT+IGN LGGASFNP G A+FY G+ SD+LFS+A+R PAQA+GAAGGA+ IME+IPEKY+ IGG PSL+ H GA+ E +L+F +TF+VL I L+GPR L KT+ LA ATV + +VGS +T P MNPA AFGWAY+ HNTWD YVYWI + GAIL+A LFR +FP PP + KQKKA Sbjct: 1 MSAVKSALGDMVITFLWVILSATFGIQTAAIVSA-----VGFHGITWAPLVISTLVVFVSISIFTVIGNVLGGASFNPCGNAAFYTAGVSSDSLFSLAIRSPAQAIGAAGGAITIMEMIPEKYKTRIGGKPSLQFGAHNGAISEVVLSFSVTFLVLLIILRGPRKLLAKTFLLALATVSVFVVGSKFTRPFMNPAIAFGWAYIYKSHNTWDHFYVYWISSYTGAILSAMLFRIIFPAPPLVQKKQKKA 243
BLAST of Vigun01g084200.1 vs. DB:Swiss
Match: SIP21_ARATH (Probable aquaporin SIP2-1 OS=Arabidopsis thaliana OX=3702 GN=SIP2-1 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 8.062e-22 Identity = 83/257 (32.30%), Postives = 116/257 (45.14%), Query Frame = 1 Query: 4 VGAIKAAIGDGVLTFMWV--------FCSSVLGIA----SGYVTKALNLQDISYNGFPYPSXXXXXXXXXXXXXXXXXXGNALGGASFNPTGTASFYAVGLGSDTLFSMALRFPXXXXXXXXXXXXIMEVIPEKYRHMIGGPSLKVDLHTGAVVEGXXXXXXXXXXXXXXXKGPRSDLLKTWFLATATVVLVMVGSAYTGPAMNPANAFGWAYLNNWHNTWDQLYVYWICPFAGAILAAWLFRAVFXXXXXXELKQK 738 +G I + D VL+FMW+ VLG + SG + + L IS F Y A G +NP + G S +FS+ +R P + +G+ I+ V PE + GP L V +H GA+ EG+LTFFI + + + K P S +KTW + A + L ++GS TG MNPA GWAY H T + L VYW+ P +LA W F+ VF P + K K Sbjct: 1 MGRIGLVVTDLVLSFMWIWAGVLVNILVHGVLGFSRTDPSGEIVRYL-FSIISMFIFAYLQ-------------------QATKGGLYNPLTALAAGVSGGFSSFIFSVFVRIPVEVIGSILAVKHIIHVFPEIGK----GPKLNVAIHHGALTEGILTFFIVLLSMGLTRKIPGSFFMKTWIGSLAKLTLHILGSDLTGGCMNPAAVMGWAYARGEHITKEHLLVYWLGPVKATLLAVWFFKVVFKPLTEEQEKPK 233
BLAST of Vigun01g084200.1 vs. DB:Swiss
Match: SIP21_ORYSJ (Aquaporin SIP2-1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIP2-1 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 3.991e-14 Identity = 58/160 (36.25%), Postives = 82/160 (51.25%), Query Frame = 1 Query: 217 GGASFNP-TGTASFYAVGLG-SDTLFSMALRFPXXXXXXXXXXXXIMEVIPEKYRHMIGGPSLKVDLHTGAVVEGXXXXXXXXXXXXXXXKGPRSDLLKTWFLATATVVLVMVGSAYTGPAMNPANAFGWAYLNNWHNTWDQLYVYWICPFAGAILAAWL 690 GGAS+NP T A A G S LF+ +R PAQ G+ G I +P+ + G L V +H GA+ EGL TF + + + + K + +KTW + + ++ S TG MNPA+AF WAY H T+D L VYW+ P +L W+ Sbjct: 73 GGASYNPLTVLAGALASRAGPSLYLFAAFVRMPAQVFGSILGVKLIRAALPKVGK----GAPLSVGVHHGALAEGLATFMVVIVSVTLKKKEMKGFFMKTWISSIWKMTFHLLSSDITGGVMNPASAFAWAYARGDHTTFDHLLVYWLAPLQATLLGVWV 228
BLAST of Vigun01g084200.1 vs. DB:Swiss
Match: SIP21_MAIZE (Aquaporin SIP2-1 OS=Zea mays OX=4577 GN=SIP2-1 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.098e-14 Identity = 63/179 (35.20%), Postives = 89/179 (49.72%), Query Frame = 1 Query: 211 ALGGASFNPTGT--ASFYAVGLGSDTLFSMALRFPXXXXXXXXXXXXIMEVIPEKYRHMIGGPSLKVDLHTGAVVEGXXXXXXXXXXXXXXXKGPRSDLLKTWFLATATVVLVMVGSAYTGPAMNPANAFGWAYLNNWHNTWDQLYVYWICPFAGAILAAWLFRAVFXXXXXXELKQKK 741 A GGAS+NP A+ + G + LF+ R PAQ +GA G I P + G L V H GA+ EGL TF + + + + K +S +KTW + + ++ S TG MNPA+AF WAY H T+D L VYW+ P +L W AV P ++K++K Sbjct: 69 ASGGASYNPLTVLAAALASHGGPAVYLFTAFARIPAQVIGAVLGVKLIQVTFPNVGK----GARLSVGAHHGALAEGLATFMVVMVSVTLKKKEMKSFFMKTWITSIWKNTIHLLSSDITGGIMNPASAFAWAYARGDHTTFDHLLVYWLAPLQATLLGVW---AVTFFTKPKKIKEQK 240 The following BLAST results are available for this feature:
BLAST of Vigun01g084200.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 8 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g084200.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g084200.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g084200.1; organism=Vigna unguiculata; type=mRNA; length=1863bpback to top protein sequence of Vigun01g084200.1_Vu_IT97K-499-35_v1.1 >Vigun01g084200.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g084200.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g084200.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=249bpback to top mRNA from alignment at Vu01:23880523..23884366+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun01g084200.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g084200.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g084200.1; organism=Vigna unguiculata; type=mRNA; length=3844bp; location=Sequence derived from: Vu01:23880523..23884366+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu01:23880523..23884366+ >Vigun01g084200.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g084200.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g084200.1; organism=Vigna unguiculata; type=CDS; length=747bp; location=Sequence derived from: Vu01:23880523..23884366+ (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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